Wall clock time and date at job start Tue Mar 31 2020 13:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47500 * 2 1 4 4 C 1.50705 * 109.47456 * 179.97438 * 3 2 1 5 5 C 1.33816 * 124.52224 * 89.99558 * 4 3 2 6 6 C 1.37475 * 115.10012 * 180.02562 * 5 4 3 7 7 C 1.36655 * 113.29346 * 0.02562 * 6 5 4 8 8 C 1.46588 * 125.45119 * 179.97438 * 7 6 5 9 9 O 1.21699 * 120.00278 * 329.60078 * 8 7 6 10 10 N 1.34776 * 119.99710 * 149.60154 * 8 7 6 11 11 C 1.46934 * 120.63062 * 353.65372 * 10 8 7 12 12 C 1.53191 * 108.77478 * 233.59001 * 11 10 8 13 13 C 1.53039 * 109.31108 * 305.36511 * 12 11 10 14 14 C 1.53039 * 109.54031 * 61.36871 * 13 12 11 15 15 H 1.09000 * 109.49482 * 58.58108 * 14 13 12 16 16 N 1.46501 * 109.52297 * 178.66698 * 14 13 12 17 17 C 1.36939 * 119.99739 * 204.91863 * 16 14 13 18 18 H 1.08001 * 120.00031 * 359.97438 * 17 16 14 19 19 C 1.38803 * 120.00054 * 179.97438 * 17 16 14 20 20 N 1.31616 * 120.00188 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 120.00238 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46564 * 60.00232 * 21 19 17 23 23 H 1.48498 * 109.47295 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47248 * 300.00229 * 21 19 17 25 25 C 1.46926 * 120.63188 * 173.63865 * 10 8 7 26 26 S 1.70620 * 124.52198 * 270.27115 * 4 3 2 27 27 H 1.08995 * 109.47226 * 300.00761 * 1 2 3 28 28 H 1.09007 * 109.46529 * 60.00084 * 1 2 3 29 29 H 1.09001 * 109.47140 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47682 * 239.99824 * 2 1 3 31 31 H 1.09009 * 109.47040 * 119.99975 * 2 1 3 32 32 H 1.09003 * 109.47141 * 59.99943 * 3 2 1 33 33 H 1.09001 * 109.47521 * 299.99773 * 3 2 1 34 34 H 1.07996 * 122.44641 * 0.02831 * 5 4 3 35 35 H 1.07995 * 123.35057 * 179.97438 * 6 5 4 36 36 H 1.08999 * 109.58525 * 353.37500 * 11 10 8 37 37 H 1.09004 * 109.58247 * 113.80004 * 11 10 8 38 38 H 1.08996 * 109.49581 * 65.31623 * 12 11 10 39 39 H 1.08999 * 109.49533 * 185.38171 * 12 11 10 40 40 H 1.09001 * 109.46078 * 301.34340 * 13 12 11 41 41 H 1.09009 * 109.45983 * 181.39032 * 13 12 11 42 42 H 0.97000 * 120.00341 * 24.91894 * 16 14 13 43 43 H 0.97003 * 120.00828 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58231 * 6.61873 * 25 10 8 45 45 H 1.09008 * 109.58392 * 246.19972 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 0.0006 5 6 4.3059 1.4421 -1.1016 6 6 5.6620 1.4416 -0.8759 7 6 5.9891 1.4409 0.4509 8 6 7.3520 1.4397 0.9906 9 8 8.2521 0.9060 0.3693 10 7 7.6082 2.0297 2.1750 11 6 6.5656 2.7967 2.8704 12 6 7.1089 4.1940 3.1856 13 6 8.4190 4.0634 3.9658 14 6 9.4520 3.3249 3.1116 15 1 9.6125 3.8709 2.1819 16 7 10.7157 3.2281 3.8464 17 6 11.8955 3.0922 3.1645 18 1 11.8943 3.0559 2.0851 19 6 13.0929 3.0010 3.8606 20 7 13.0944 3.0447 5.1761 21 14 14.7022 2.8149 2.9306 22 1 14.8952 3.9847 2.0365 23 1 15.8270 2.7405 3.8973 24 1 14.6638 1.5722 2.1186 25 6 8.9353 1.9179 2.7954 26 16 4.5134 1.4359 1.4068 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.8838 1.4424 -2.0956 35 1 6.3957 1.4410 -1.6684 36 1 5.6870 2.8821 2.2309 37 1 6.2974 2.2910 3.7980 38 1 7.2915 4.7317 2.2553 39 1 6.3809 4.7406 3.7850 40 1 8.2406 3.5041 4.8842 41 1 8.7951 5.0563 4.2129 42 1 10.7168 3.2603 4.8158 43 1 13.9311 2.9806 5.6627 44 1 9.6202 1.4233 2.1066 45 1 8.8603 1.3405 3.7170 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999274103.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:36 Heat of formation + Delta-G solvation = -22.910964 kcal Electronic energy + Delta-G solvation = -24665.592519 eV Core-core repulsion = 21194.550214 eV Total energy + Delta-G solvation = -3471.042306 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.30691 -39.27902 -38.46843 -36.28868 -35.75613 -33.99398 -32.81583 -31.48822 -30.06540 -28.11637 -26.21407 -25.93402 -24.57666 -23.36863 -22.44889 -22.30851 -21.07814 -19.51376 -19.16258 -19.02651 -17.25044 -17.10213 -16.86631 -16.32520 -16.00096 -15.73092 -15.50127 -15.48546 -15.18730 -14.75835 -14.67964 -14.22430 -14.07832 -13.99337 -13.84624 -13.49855 -13.40221 -13.04605 -12.90080 -12.72074 -12.55536 -12.36929 -12.27608 -12.19881 -12.03349 -11.95307 -11.85546 -11.66104 -11.43710 -11.38853 -11.18632 -11.04909 -9.92780 -9.59482 -9.36587 -9.04452 -8.00036 -5.29483 -0.48468 0.39451 0.90342 1.39742 1.43058 1.45916 1.52135 1.82112 2.10292 2.52125 3.32214 3.46597 3.68770 3.71915 3.97174 3.99907 4.08935 4.14266 4.19383 4.26863 4.30417 4.33229 4.43484 4.51540 4.64483 4.66754 4.73869 4.81488 4.84044 4.87839 4.96275 4.99427 5.05869 5.09375 5.18015 5.25720 5.31574 5.33874 5.40135 5.41289 5.44402 5.48441 5.51915 6.22393 6.30528 6.98433 7.29305 8.00552 8.27012 9.22118 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028404 B = 0.002637 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.541310 B =10614.481053 C =11212.097563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.050 4.050 4 C -0.195 4.195 5 C -0.159 4.159 6 C -0.058 4.058 7 C -0.304 4.304 8 C 0.577 3.423 9 O -0.586 6.586 10 N -0.600 5.600 11 C 0.088 3.912 12 C -0.118 4.118 13 C -0.117 4.117 14 C 0.167 3.833 15 H 0.029 0.971 16 N -0.728 5.728 17 C -0.248 4.248 18 H 0.063 0.937 19 C -0.067 4.067 20 N -0.962 5.962 21 Si 0.968 3.032 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.284 1.284 25 C 0.108 3.892 26 S 0.261 5.739 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.164 0.836 35 H 0.140 0.860 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.065 0.935 42 H 0.379 0.621 43 H 0.254 0.746 44 H 0.049 0.951 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.254 -0.996 -7.867 32.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.089 4.089 4 C -0.315 4.315 5 C -0.188 4.188 6 C -0.092 4.092 7 C -0.423 4.423 8 C 0.367 3.633 9 O -0.469 6.469 10 N -0.332 5.332 11 C -0.034 4.034 12 C -0.156 4.156 13 C -0.156 4.156 14 C 0.057 3.943 15 H 0.048 0.952 16 N -0.368 5.368 17 C -0.379 4.379 18 H 0.081 0.919 19 C -0.260 4.260 20 N -0.612 5.612 21 Si 0.797 3.203 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.211 1.211 25 C -0.017 4.017 26 S 0.530 5.470 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.181 0.819 35 H 0.157 0.843 36 H 0.122 0.878 37 H 0.113 0.887 38 H 0.079 0.921 39 H 0.136 0.864 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.212 0.788 43 H 0.062 0.938 44 H 0.068 0.932 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -30.967 -1.276 -6.736 31.716 hybrid contribution 2.172 -0.374 -1.761 2.821 sum -28.795 -1.651 -8.497 30.068 Atomic orbital electron populations 1.21764 0.94271 1.02226 1.02564 1.21565 0.96813 0.95233 1.02334 1.20381 0.85047 0.98465 1.05013 1.24910 1.02618 1.05672 0.98252 1.20034 0.91204 1.06607 1.00985 1.20871 0.97476 0.96365 0.94497 1.24374 0.96788 1.21800 0.99386 1.17637 0.87275 0.77889 0.80530 1.90792 1.47731 1.48381 1.59960 1.48163 1.13570 1.51182 1.20309 1.22486 0.89803 0.92626 0.98507 1.21849 0.96877 0.95859 1.01032 1.21742 0.94619 1.00579 0.98624 1.20641 0.86134 0.92728 0.94772 0.95244 1.42474 1.01132 1.87513 1.05651 1.19460 0.86005 1.41414 0.91054 0.91884 1.25480 1.00793 1.03262 0.96432 1.69775 1.26548 1.58622 1.06216 0.85302 0.79581 0.78039 0.77394 1.20410 1.21401 1.21056 1.22304 0.82351 1.00377 0.96677 1.82879 0.90874 1.66797 1.06403 0.91998 0.91934 0.92454 0.91995 0.92296 0.89194 0.88311 0.81901 0.84265 0.87805 0.88746 0.92082 0.86414 0.90968 0.91577 0.78836 0.93761 0.93223 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.91 71.98 0.71 -0.27 16 2 C -0.12 -1.08 5.92 30.59 0.18 -0.90 16 3 C -0.05 -0.43 5.65 29.85 0.17 -0.26 16 4 C -0.19 -2.82 5.53 24.68 0.14 -2.68 16 5 C -0.16 -2.68 10.00 21.08 0.21 -2.47 16 6 C -0.06 -1.38 10.14 21.72 0.22 -1.16 16 7 C -0.30 -8.13 5.73 24.08 0.14 -8.00 16 8 C 0.58 20.79 7.58 86.42 0.66 21.45 16 9 O -0.59 -26.87 16.40 -4.34 -0.07 -26.94 16 10 N -0.60 -19.76 2.97 -823.69 -2.45 -22.21 16 11 C 0.09 1.97 5.52 86.36 0.48 2.45 16 12 C -0.12 -2.59 6.08 30.67 0.19 -2.40 16 13 C -0.12 -3.58 5.36 30.62 0.16 -3.41 16 14 C 0.17 6.94 2.92 45.07 0.13 7.07 16 15 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 16 N -0.73 -37.64 5.13 -322.58 -1.65 -39.29 16 17 C -0.25 -14.42 9.93 84.03 0.83 -13.59 16 18 H 0.06 3.70 7.83 -2.91 -0.02 3.67 16 19 C -0.07 -3.94 5.50 84.86 0.47 -3.48 16 20 N -0.96 -59.22 13.06 21.65 0.28 -58.93 16 21 Si 0.97 48.06 29.55 68.60 2.03 50.09 16 22 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 24 H -0.28 -13.96 7.11 99.48 0.71 -13.26 16 25 C 0.11 4.39 6.03 86.36 0.52 4.91 16 26 S 0.26 4.46 19.27 -56.49 -1.09 3.37 16 27 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.06 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.09 0.57 8.14 -2.39 -0.02 0.56 16 33 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.16 1.95 8.06 -2.91 -0.02 1.92 16 35 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 36 H 0.10 1.92 3.99 -18.72 -0.07 1.85 16 37 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 41 H 0.07 2.07 8.14 -2.38 -0.02 2.06 16 42 H 0.38 20.37 7.80 -92.71 -0.72 19.65 16 43 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.05 2.43 7.00 -2.39 -0.02 2.41 16 45 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 Total: -1.00 -74.89 374.45 2.45 -72.44 By element: Atomic # 1 Polarization: 24.04 SS G_CDS: 0.19 Total: 24.23 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 5.20 Total: -2.74 kcal Atomic # 7 Polarization: -116.62 SS G_CDS: -3.82 Total: -120.44 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.07 Total: -26.94 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Atomic # 16 Polarization: 4.46 SS G_CDS: -1.09 Total: 3.37 kcal Total: -74.89 2.45 -72.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999274103.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.529 kcal (2) G-P(sol) polarization free energy of solvation -74.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds