Wall clock time and date at job start Tue Mar 31 2020 13:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47361 * 2 1 4 4 C 1.50702 * 109.47106 * 179.97438 * 3 2 1 5 5 C 1.33823 * 124.51820 * 90.00100 * 4 3 2 6 6 C 1.37471 * 115.10064 * 179.72712 * 5 4 3 7 7 C 1.36645 * 113.29497 * 0.45324 * 6 5 4 8 8 C 1.46590 * 125.45963 * 179.83609 * 7 6 5 9 9 O 1.21706 * 119.99674 * 44.78124 * 8 7 6 10 10 N 1.34777 * 120.00252 * 224.78122 * 8 7 6 11 11 C 1.46928 * 120.62743 * 356.41257 * 10 8 7 12 12 C 1.53192 * 108.77633 * 126.41483 * 11 10 8 13 13 C 1.53042 * 109.31296 * 54.62753 * 12 11 10 14 14 C 1.53039 * 109.54141 * 298.63779 * 13 12 11 15 15 H 1.08999 * 109.49473 * 301.38179 * 14 13 12 16 16 N 1.46497 * 109.49768 * 181.31622 * 14 13 12 17 17 C 1.36935 * 119.99922 * 155.00521 * 16 14 13 18 18 H 1.07998 * 120.00100 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99832 * 180.02562 * 17 16 14 20 20 N 1.31616 * 119.99573 * 179.71960 * 19 17 16 21 21 Si 1.86794 * 120.00194 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47164 * 90.00118 * 21 19 17 23 23 H 1.48499 * 109.47035 * 210.00255 * 21 19 17 24 24 H 1.48503 * 109.47035 * 330.00216 * 21 19 17 25 25 C 1.46924 * 120.62941 * 176.43073 * 10 8 7 26 26 S 1.70614 * 124.52786 * 269.97846 * 4 3 2 27 27 H 1.09003 * 109.47423 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47191 * 300.00126 * 1 2 3 29 29 H 1.09001 * 109.47027 * 59.99804 * 1 2 3 30 30 H 1.09004 * 109.46685 * 240.00019 * 2 1 3 31 31 H 1.08998 * 109.47300 * 120.00644 * 2 1 3 32 32 H 1.09004 * 109.47206 * 60.00338 * 3 2 1 33 33 H 1.09001 * 109.47210 * 300.00084 * 3 2 1 34 34 H 1.07999 * 122.45237 * 359.95747 * 5 4 3 35 35 H 1.07995 * 123.35441 * 180.27484 * 6 5 4 36 36 H 1.08998 * 109.59213 * 6.62035 * 11 10 8 37 37 H 1.09005 * 109.58435 * 246.19850 * 11 10 8 38 38 H 1.09003 * 109.49629 * 294.68055 * 12 11 10 39 39 H 1.08999 * 109.49807 * 174.58170 * 12 11 10 40 40 H 1.09001 * 109.46031 * 178.61304 * 13 12 11 41 41 H 1.09006 * 109.44816 * 58.65255 * 13 12 11 42 42 H 0.96999 * 120.00107 * 334.99724 * 16 14 13 43 43 H 0.97007 * 119.99962 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58247 * 113.80008 * 25 10 8 45 45 H 1.08998 * 109.58596 * 353.37903 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3058 1.4422 -1.1017 6 6 5.6619 1.4481 -0.8762 7 6 5.9891 1.4432 0.4505 8 6 7.3520 1.4441 0.9903 9 8 8.1914 2.1906 0.5219 10 7 7.6755 0.6184 2.0051 11 6 6.6547 -0.2317 2.6330 12 6 7.1423 -1.6838 2.6135 13 6 8.5204 -1.7639 3.2744 14 6 9.5162 -0.9094 2.4869 15 1 9.5646 -1.2634 1.4571 16 7 10.8419 -1.0117 3.1020 17 6 11.9645 -0.7891 2.3501 18 1 11.8727 -0.5385 1.3037 19 6 13.2206 -0.8866 2.9329 20 7 14.2998 -0.6780 2.2089 21 14 13.3795 -1.3207 4.7427 22 1 13.4694 -2.7955 4.8919 23 1 14.6051 -0.6915 5.2969 24 1 12.1903 -0.8204 5.4780 25 6 9.0555 0.5515 2.5049 26 16 4.5135 1.4431 1.4066 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.8837 1.4414 -2.0958 35 1 6.3956 1.4530 -1.6686 36 1 5.7206 -0.1523 2.0769 37 1 6.4971 0.0871 3.6634 38 1 7.2127 -2.0301 1.5824 39 1 6.4391 -2.3111 3.1613 40 1 8.8588 -2.8000 3.2840 41 1 8.4542 -1.3941 4.2977 42 1 10.9244 -1.2371 4.0418 43 1 15.1777 -0.7457 2.6162 44 1 9.0937 0.9341 3.5248 45 1 9.7054 1.1476 1.8643 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999274106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:41 Heat of formation + Delta-G solvation = 0.345368 kcal Electronic energy + Delta-G solvation = -24787.068274 eV Core-core repulsion = 21317.034439 eV Total energy + Delta-G solvation = -3470.033835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.04337 -38.34790 -37.25334 -35.20427 -34.63576 -32.36869 -31.38596 -30.67546 -28.93983 -27.23468 -25.13715 -24.05094 -23.64010 -21.85485 -21.78932 -21.24407 -19.86155 -18.53283 -17.92217 -17.54448 -16.31846 -16.08646 -15.33949 -15.21515 -14.95994 -14.52702 -14.38557 -14.18703 -13.97021 -13.70921 -13.44725 -13.12182 -12.97724 -12.89969 -12.59930 -12.56767 -12.36412 -12.09704 -11.82181 -11.71647 -11.53410 -11.28631 -11.18237 -11.00144 -10.93499 -10.74383 -10.64026 -10.32033 -9.91493 -9.84226 -9.58840 -9.12384 -8.81984 -8.58730 -8.41625 -7.30849 -5.77462 -3.15102 0.46001 1.21360 1.68924 2.34276 2.96355 3.28343 3.36323 3.38471 3.44784 4.29725 4.52638 4.55257 4.57508 4.62718 4.78426 4.93281 4.99879 5.07711 5.15532 5.18852 5.29146 5.33597 5.36447 5.39536 5.44021 5.48157 5.63248 5.68328 5.69645 5.77792 5.83273 5.85445 5.89547 5.98622 6.01627 6.06869 6.21732 6.22954 6.36363 6.61814 6.70374 6.87973 7.53726 7.98086 8.26915 8.41173 9.18085 9.89625 10.08052 11.40471 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026610 B = 0.002783 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.001092 B =10059.117123 C =10652.436002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.049 4.049 4 C -0.211 4.211 5 C -0.146 4.146 6 C -0.067 4.067 7 C -0.252 4.252 8 C 0.583 3.417 9 O -0.524 6.524 10 N -0.599 5.599 11 C 0.094 3.906 12 C -0.127 4.127 13 C -0.130 4.130 14 C 0.173 3.827 15 H 0.061 0.939 16 N -0.742 5.742 17 C -0.249 4.249 18 H 0.092 0.908 19 C 0.007 3.993 20 N -0.930 5.930 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.094 3.906 26 S 0.209 5.791 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.141 0.859 35 H 0.149 0.851 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.363 0.637 43 H 0.260 0.740 44 H 0.062 0.938 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.246 0.731 -1.581 30.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.088 4.088 4 C -0.330 4.330 5 C -0.176 4.176 6 C -0.099 4.099 7 C -0.372 4.372 8 C 0.369 3.631 9 O -0.401 6.401 10 N -0.332 5.332 11 C -0.030 4.030 12 C -0.166 4.166 13 C -0.168 4.168 14 C 0.062 3.938 15 H 0.079 0.921 16 N -0.384 5.384 17 C -0.378 4.378 18 H 0.110 0.890 19 C -0.189 4.189 20 N -0.577 5.577 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.030 4.030 26 S 0.477 5.523 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.102 0.898 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.196 0.804 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -29.893 1.181 -0.460 29.920 hybrid contribution 0.570 -0.248 -0.297 0.689 sum -29.323 0.933 -0.757 29.348 Atomic orbital electron populations 1.21783 0.95373 1.01972 1.01919 1.21568 0.95873 0.95584 1.02853 1.20217 0.87245 0.97994 1.03392 1.24326 1.01092 1.09169 0.98442 1.19902 0.92487 1.05784 0.99463 1.20662 0.96252 0.98049 0.94915 1.24621 0.97236 1.17261 0.98100 1.17082 0.85632 0.80629 0.79759 1.90866 1.49772 1.39970 1.59514 1.48133 1.11041 1.40163 1.33911 1.22114 0.91302 0.91174 0.98456 1.21844 0.97477 0.95232 1.02004 1.21877 0.94282 1.01228 0.99441 1.20462 0.84881 0.91415 0.97011 0.92142 1.42727 1.01155 1.84966 1.09533 1.19099 0.83329 1.40558 0.94839 0.89047 1.24691 0.95271 1.01507 0.97457 1.69708 0.97205 1.55668 1.35148 0.86547 0.77076 0.78263 0.86596 1.21054 1.21704 1.20312 1.22764 0.79470 1.01348 0.99444 1.83091 0.93555 1.68155 1.07474 0.92428 0.92622 0.92606 0.91438 0.91638 0.90759 0.89968 0.84131 0.83294 0.89797 0.91067 0.91287 0.90758 0.91168 0.92072 0.80436 0.92992 0.91921 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.70 9.91 37.15 0.37 -0.34 16 2 C -0.12 -0.68 5.92 -26.74 -0.16 -0.84 16 3 C -0.05 -0.31 5.65 -27.88 -0.16 -0.46 16 4 C -0.21 -1.84 5.53 -35.86 -0.20 -2.04 16 5 C -0.15 -1.38 9.99 -41.41 -0.41 -1.80 16 6 C -0.07 -0.80 10.24 -40.44 -0.41 -1.21 16 7 C -0.25 -3.38 5.49 -36.79 -0.20 -3.58 16 8 C 0.58 9.97 7.54 -12.89 -0.10 9.87 16 9 O -0.52 -11.17 16.51 5.18 0.09 -11.09 16 10 N -0.60 -9.47 2.97 -174.34 -0.52 -9.99 16 11 C 0.09 1.10 5.88 -3.71 -0.02 1.08 16 12 C -0.13 -1.46 6.08 -26.61 -0.16 -1.63 16 13 C -0.13 -1.90 5.35 -26.69 -0.14 -2.04 16 14 C 0.17 3.32 2.92 -67.81 -0.20 3.12 16 15 H 0.06 1.26 8.08 -51.93 -0.42 0.84 16 16 N -0.74 -17.35 4.93 -53.31 -0.26 -17.61 16 17 C -0.25 -7.04 10.41 -15.06 -0.16 -7.20 16 18 H 0.09 2.83 8.06 -52.49 -0.42 2.40 16 19 C 0.01 0.20 5.50 -17.43 -0.10 0.11 16 20 N -0.93 -29.47 13.97 55.49 0.78 -28.69 16 21 Si 0.88 22.00 27.73 -169.99 -4.71 17.28 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.28 -6.43 6.52 56.52 0.37 -6.06 16 25 C 0.09 1.76 6.01 -3.71 -0.02 1.74 16 26 S 0.21 2.03 19.84 -107.50 -2.13 -0.10 16 27 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 36 H 0.08 0.86 4.00 -30.15 -0.12 0.74 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.36 8.22 5.66 -40.82 -0.23 7.99 16 43 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.10 2.16 7.02 -51.93 -0.36 1.80 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -33.73 372.20 -10.30 -44.03 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -7.07 Total: 5.77 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: -2.07 Total: -5.22 kcal Atomic # 7 Polarization: -56.28 SS G_CDS: -0.01 Total: -56.29 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.09 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.71 Total: 17.28 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.13 Total: -0.10 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.73 -10.30 -44.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999274106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.378 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds