Wall clock time and date at job start Tue Mar 31 2020 13:25:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47361 * 2 1 4 4 C 1.50702 * 109.47106 * 179.97438 * 3 2 1 5 5 C 1.33823 * 124.51820 * 90.00100 * 4 3 2 6 6 C 1.37471 * 115.10064 * 179.72712 * 5 4 3 7 7 C 1.36645 * 113.29497 * 0.45324 * 6 5 4 8 8 C 1.46590 * 125.45963 * 179.83609 * 7 6 5 9 9 O 1.21706 * 119.99674 * 44.78124 * 8 7 6 10 10 N 1.34777 * 120.00252 * 224.78122 * 8 7 6 11 11 C 1.46928 * 120.62743 * 356.41257 * 10 8 7 12 12 C 1.53192 * 108.77633 * 126.41483 * 11 10 8 13 13 C 1.53042 * 109.31296 * 54.62753 * 12 11 10 14 14 C 1.53039 * 109.54141 * 298.63779 * 13 12 11 15 15 H 1.08999 * 109.49473 * 301.38179 * 14 13 12 16 16 N 1.46497 * 109.49768 * 181.31622 * 14 13 12 17 17 C 1.36935 * 119.99922 * 155.00521 * 16 14 13 18 18 H 1.07998 * 120.00100 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99832 * 180.02562 * 17 16 14 20 20 N 1.31616 * 119.99573 * 179.71960 * 19 17 16 21 21 Si 1.86794 * 120.00194 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47164 * 90.00118 * 21 19 17 23 23 H 1.48499 * 109.47035 * 210.00255 * 21 19 17 24 24 H 1.48503 * 109.47035 * 330.00216 * 21 19 17 25 25 C 1.46924 * 120.62941 * 176.43073 * 10 8 7 26 26 S 1.70614 * 124.52786 * 269.97846 * 4 3 2 27 27 H 1.09003 * 109.47423 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47191 * 300.00126 * 1 2 3 29 29 H 1.09001 * 109.47027 * 59.99804 * 1 2 3 30 30 H 1.09004 * 109.46685 * 240.00019 * 2 1 3 31 31 H 1.08998 * 109.47300 * 120.00644 * 2 1 3 32 32 H 1.09004 * 109.47206 * 60.00338 * 3 2 1 33 33 H 1.09001 * 109.47210 * 300.00084 * 3 2 1 34 34 H 1.07999 * 122.45237 * 359.95747 * 5 4 3 35 35 H 1.07995 * 123.35441 * 180.27484 * 6 5 4 36 36 H 1.08998 * 109.59213 * 6.62035 * 11 10 8 37 37 H 1.09005 * 109.58435 * 246.19850 * 11 10 8 38 38 H 1.09003 * 109.49629 * 294.68055 * 12 11 10 39 39 H 1.08999 * 109.49807 * 174.58170 * 12 11 10 40 40 H 1.09001 * 109.46031 * 178.61304 * 13 12 11 41 41 H 1.09006 * 109.44816 * 58.65255 * 13 12 11 42 42 H 0.96999 * 120.00107 * 334.99724 * 16 14 13 43 43 H 0.97007 * 119.99962 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.58247 * 113.80008 * 25 10 8 45 45 H 1.08998 * 109.58596 * 353.37903 * 25 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3058 1.4422 -1.1017 6 6 5.6619 1.4481 -0.8762 7 6 5.9891 1.4432 0.4505 8 6 7.3520 1.4441 0.9903 9 8 8.1914 2.1906 0.5219 10 7 7.6755 0.6184 2.0051 11 6 6.6547 -0.2317 2.6330 12 6 7.1423 -1.6838 2.6135 13 6 8.5204 -1.7639 3.2744 14 6 9.5162 -0.9094 2.4869 15 1 9.5646 -1.2634 1.4571 16 7 10.8419 -1.0117 3.1020 17 6 11.9645 -0.7891 2.3501 18 1 11.8727 -0.5385 1.3037 19 6 13.2206 -0.8866 2.9329 20 7 14.2998 -0.6780 2.2089 21 14 13.3795 -1.3207 4.7427 22 1 13.4694 -2.7955 4.8919 23 1 14.6051 -0.6915 5.2969 24 1 12.1903 -0.8204 5.4780 25 6 9.0555 0.5515 2.5049 26 16 4.5135 1.4431 1.4066 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.8837 1.4414 -2.0958 35 1 6.3956 1.4530 -1.6686 36 1 5.7206 -0.1523 2.0769 37 1 6.4971 0.0871 3.6634 38 1 7.2127 -2.0301 1.5824 39 1 6.4391 -2.3111 3.1613 40 1 8.8588 -2.8000 3.2840 41 1 8.4542 -1.3941 4.2977 42 1 10.9244 -1.2371 4.0418 43 1 15.1777 -0.7457 2.6162 44 1 9.0937 0.9341 3.5248 45 1 9.7054 1.1476 1.8643 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999274106.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:40 Heat of formation + Delta-G solvation = -21.045075 kcal Electronic energy + Delta-G solvation = -24787.995833 eV Core-core repulsion = 21317.034439 eV Total energy + Delta-G solvation = -3470.961395 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.33682 -39.28588 -38.54845 -36.39369 -35.75378 -34.06016 -32.97923 -31.60583 -30.41490 -28.15427 -26.21707 -25.72128 -24.58974 -23.22008 -22.52055 -22.29241 -21.21560 -19.71279 -19.40388 -19.02893 -17.34433 -17.17561 -16.81954 -16.36406 -16.05181 -15.71378 -15.62391 -15.44815 -15.03519 -14.75082 -14.68724 -14.29057 -14.17871 -14.07964 -13.93140 -13.69626 -13.33833 -13.20040 -12.98072 -12.73078 -12.56724 -12.33781 -12.22692 -12.10218 -12.04701 -11.95746 -11.86516 -11.69876 -11.46931 -11.40391 -11.21826 -11.07664 -9.97874 -9.62743 -9.38044 -9.30086 -8.05814 -5.42594 -0.43923 0.33315 0.87614 1.36084 1.41684 1.42250 1.48982 1.73514 2.07977 2.46303 3.24423 3.42900 3.50261 3.71416 3.93577 3.98656 4.02002 4.10276 4.20629 4.21545 4.30204 4.30591 4.43709 4.51637 4.63036 4.66145 4.73343 4.80087 4.83706 4.89170 4.94935 5.00894 5.05019 5.08793 5.17290 5.27272 5.31899 5.32966 5.38360 5.41024 5.44564 5.50394 5.72162 6.17380 6.27690 6.96004 7.03149 7.74752 7.97845 9.15914 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026610 B = 0.002783 C = 0.002628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.001092 B =10059.117123 C =10652.436002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.050 4.050 4 C -0.193 4.193 5 C -0.156 4.156 6 C -0.066 4.066 7 C -0.298 4.298 8 C 0.577 3.423 9 O -0.586 6.586 10 N -0.597 5.597 11 C 0.087 3.913 12 C -0.119 4.119 13 C -0.121 4.121 14 C 0.170 3.830 15 H 0.030 0.970 16 N -0.742 5.742 17 C -0.240 4.240 18 H 0.043 0.957 19 C -0.066 4.066 20 N -0.985 5.985 21 Si 0.965 3.035 22 H -0.273 1.273 23 H -0.297 1.297 24 H -0.245 1.245 25 C 0.105 3.895 26 S 0.259 5.741 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.096 0.904 34 H 0.163 0.837 35 H 0.137 0.863 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.058 0.942 39 H 0.120 0.880 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.372 0.628 43 H 0.259 0.741 44 H 0.073 0.927 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.877 -0.513 1.063 34.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.089 4.089 4 C -0.313 4.313 5 C -0.185 4.185 6 C -0.100 4.100 7 C -0.417 4.417 8 C 0.365 3.635 9 O -0.468 6.468 10 N -0.329 5.329 11 C -0.035 4.035 12 C -0.158 4.158 13 C -0.159 4.159 14 C 0.061 3.939 15 H 0.048 0.952 16 N -0.385 5.385 17 C -0.370 4.370 18 H 0.061 0.939 19 C -0.257 4.257 20 N -0.634 5.634 21 Si 0.791 3.209 22 H -0.198 1.198 23 H -0.224 1.224 24 H -0.169 1.169 25 C -0.020 4.020 26 S 0.528 5.472 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.105 0.895 33 H 0.114 0.886 34 H 0.181 0.819 35 H 0.155 0.845 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.077 0.923 39 H 0.138 0.862 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.206 0.794 43 H 0.068 0.932 44 H 0.092 0.908 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -34.623 -0.094 2.209 34.694 hybrid contribution 1.874 0.176 -1.268 2.269 sum -32.749 0.082 0.942 32.763 Atomic orbital electron populations 1.21772 0.94492 1.02272 1.02394 1.21556 0.96605 0.94890 1.02686 1.20380 0.84987 0.98810 1.04752 1.24772 1.02486 1.06226 0.97775 1.20016 0.91133 1.06397 1.01000 1.20818 0.97544 0.97259 0.94346 1.24325 0.96907 1.21078 0.99435 1.17678 0.86817 0.79720 0.79240 1.90818 1.52090 1.42514 1.61409 1.48178 1.10505 1.40447 1.33790 1.22503 0.90658 0.90586 0.99748 1.21859 0.96421 0.95641 1.01870 1.21810 0.94272 1.00103 0.99724 1.20624 0.84498 0.92517 0.96284 0.95192 1.42626 1.01309 1.84997 1.09586 1.18947 0.85440 1.39282 0.93373 0.93888 1.25654 0.94565 1.02077 1.03410 1.69923 0.97877 1.57804 1.37837 0.85270 0.77752 0.78324 0.79541 1.19837 1.22375 1.16944 1.22288 0.80896 1.00043 0.98764 1.82769 0.90702 1.67142 1.06603 0.92273 0.92118 0.92205 0.91816 0.91688 0.89477 0.88604 0.81910 0.84531 0.87988 0.88450 0.92288 0.86225 0.90763 0.90075 0.79395 0.93213 0.90845 0.93666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 71.98 0.71 -0.17 16 2 C -0.12 -0.92 5.92 30.59 0.18 -0.74 16 3 C -0.05 -0.43 5.65 29.85 0.17 -0.26 16 4 C -0.19 -2.77 5.53 24.68 0.14 -2.63 16 5 C -0.16 -2.66 9.99 21.08 0.21 -2.45 16 6 C -0.07 -1.60 10.24 21.72 0.22 -1.38 16 7 C -0.30 -7.98 5.49 24.08 0.13 -7.84 16 8 C 0.58 20.77 7.54 86.42 0.65 21.42 16 9 O -0.59 -27.38 16.51 -4.37 -0.07 -27.45 16 10 N -0.60 -19.12 2.97 -823.70 -2.45 -21.56 16 11 C 0.09 1.81 5.88 86.36 0.51 2.31 16 12 C -0.12 -2.35 6.08 30.67 0.19 -2.17 16 13 C -0.12 -3.22 5.35 30.62 0.16 -3.06 16 14 C 0.17 6.66 2.92 45.07 0.13 6.79 16 15 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 16 N -0.74 -35.13 4.93 -322.58 -1.59 -36.72 16 17 C -0.24 -14.28 10.41 84.03 0.88 -13.40 16 18 H 0.04 2.91 8.06 -2.91 -0.02 2.89 16 19 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 20 N -0.98 -65.32 13.97 21.65 0.30 -65.02 16 21 Si 0.97 45.70 27.73 68.60 1.90 47.60 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 24 H -0.25 -10.22 6.52 99.48 0.65 -9.57 16 25 C 0.11 4.12 6.01 86.36 0.52 4.64 16 26 S 0.26 4.34 19.84 -56.49 -1.12 3.22 16 27 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 30 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 35 H 0.14 3.50 8.06 -2.91 -0.02 3.48 16 36 H 0.10 1.78 4.00 -16.23 -0.06 1.71 16 37 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.37 16.21 5.66 -92.71 -0.52 15.68 16 43 H 0.26 16.25 8.31 -92.70 -0.77 15.48 16 44 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 45 H 0.04 2.22 7.02 -2.39 -0.02 2.20 16 Total: -1.00 -81.22 372.20 2.58 -78.63 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.34 Total: 23.75 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 5.27 Total: -2.45 kcal Atomic # 7 Polarization: -119.57 SS G_CDS: -3.74 Total: -123.30 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -0.07 Total: -27.45 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 1.90 Total: 47.60 kcal Atomic # 16 Polarization: 4.34 SS G_CDS: -1.12 Total: 3.22 kcal Total: -81.22 2.58 -78.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999274106.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.586 kcal (2) G-P(sol) polarization free energy of solvation -81.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds