Wall clock time and date at job start Tue Mar 31 2020 13:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46851 * 2 1 4 4 S 1.70623 * 124.52191 * 270.02061 * 3 2 1 5 5 C 1.75829 * 91.56166 * 179.73338 * 4 3 2 6 6 C 1.46582 * 125.45231 * 179.97438 * 5 4 3 7 7 O 1.21710 * 119.99452 * 171.43771 * 6 5 4 8 8 N 1.34775 * 120.00383 * 351.44617 * 6 5 4 9 9 C 1.46493 * 120.00052 * 0.11095 * 8 6 5 10 10 C 1.46496 * 119.99760 * 180.11883 * 8 6 5 11 11 C 1.53785 * 113.61380 * 219.12880 * 10 8 6 12 12 C 1.53946 * 87.02136 * 220.04841 * 11 10 8 13 13 N 1.46498 * 113.54343 * 270.80886 * 12 11 10 14 14 C 1.36937 * 120.00664 * 252.50132 * 13 12 11 15 15 H 1.08008 * 119.99444 * 359.97438 * 14 13 12 16 16 C 1.38807 * 120.00394 * 179.97438 * 14 13 12 17 17 N 1.31622 * 120.00120 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 120.00015 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47513 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47143 * 120.00246 * 18 16 14 21 21 H 1.48503 * 109.47079 * 239.99825 * 18 16 14 22 22 C 1.53780 * 87.11412 * 25.36353 * 12 11 10 23 23 C 1.36641 * 109.08575 * 0.02562 * 5 4 3 24 24 C 1.33820 * 124.52437 * 89.72526 * 3 2 1 25 25 C 1.50696 * 122.44603 * 0.24008 * 24 3 2 26 26 H 1.09006 * 109.47341 * 299.99710 * 1 2 3 27 27 H 1.08994 * 109.47159 * 60.00527 * 1 2 3 28 28 H 1.09002 * 109.46689 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47424 * 239.99791 * 2 1 3 30 30 H 1.09004 * 109.46989 * 119.99506 * 2 1 3 31 31 H 1.09001 * 109.47054 * 83.46824 * 9 8 6 32 32 H 1.08995 * 109.47782 * 203.46581 * 9 8 6 33 33 H 1.09000 * 109.47518 * 323.47021 * 9 8 6 34 34 H 1.09003 * 112.85799 * 350.32872 * 10 8 6 35 35 H 1.09001 * 113.61563 * 334.57378 * 11 10 8 36 36 H 1.09005 * 113.60866 * 105.47101 * 11 10 8 37 37 H 1.09007 * 113.74141 * 139.94669 * 12 11 10 38 38 H 0.97006 * 119.99853 * 72.49716 * 13 12 11 39 39 H 0.96996 * 120.00230 * 179.97438 * 17 16 14 40 40 H 1.08995 * 113.61775 * 220.08793 * 22 12 11 41 41 H 1.08999 * 113.61277 * 89.18491 * 22 12 11 42 42 H 1.08002 * 123.35436 * 179.97438 * 23 5 4 43 43 H 1.09003 * 109.47428 * 90.00654 * 25 24 3 44 44 H 1.09009 * 109.47199 * 210.00365 * 25 24 3 45 45 H 1.09005 * 109.47701 * 330.00101 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 16 2.3541 2.3327 -1.4058 5 6 2.8384 3.7262 -0.4492 6 6 3.2894 5.0125 -0.9885 7 8 3.4525 5.9610 -0.2435 8 7 3.5232 5.1448 -2.3092 9 6 3.3243 4.0038 -3.2062 10 6 3.9765 6.4296 -2.8477 11 6 3.3454 6.7861 -4.2040 12 6 4.7298 7.3173 -4.6177 13 7 4.9375 8.7293 -4.2872 14 6 4.9467 9.6711 -5.2813 15 1 4.8013 9.3728 -6.3091 16 6 5.1430 11.0091 -4.9680 17 7 5.3197 11.3727 -3.7154 18 14 5.1563 12.2936 -6.3241 19 1 4.9376 11.6317 -7.6352 20 1 4.0742 13.2813 -6.0810 21 1 6.4682 12.9893 -6.3341 22 6 5.3249 6.3483 -3.5825 23 6 2.7280 3.4177 0.8774 24 6 2.2801 2.1377 1.1025 25 6 2.0823 1.5823 2.4894 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 2.2717 3.9371 -3.4813 32 1 3.9267 4.1384 -4.1045 33 1 3.6264 3.0868 -2.7002 34 1 3.9255 7.2366 -2.1168 35 1 3.0220 5.9171 -4.7770 36 1 2.5809 7.5605 -4.1397 37 1 5.0020 7.0789 -5.6460 38 1 5.0685 8.9972 -3.3641 39 1 5.4573 12.3076 -3.4965 40 1 6.1562 6.7697 -3.0173 41 1 5.5438 5.3594 -3.9853 42 1 2.9686 4.1105 1.6702 43 1 3.0048 1.1093 2.8263 44 1 1.8191 2.3915 3.1707 45 1 1.2801 0.8445 2.4745 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999797225.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:50 Heat of formation + Delta-G solvation = 27.010318 kcal Electronic energy + Delta-G solvation = -24546.311515 eV Core-core repulsion = 21077.433958 eV Total energy + Delta-G solvation = -3468.877556 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.17384 -38.91731 -37.80245 -34.90856 -34.04177 -32.98268 -30.60839 -29.76517 -27.79896 -27.22305 -25.58335 -25.10171 -23.93130 -22.86576 -22.16480 -20.10807 -18.55548 -18.26981 -18.10991 -17.31742 -16.31736 -16.11086 -15.59490 -15.04006 -14.84580 -14.57227 -14.44139 -13.95115 -13.77130 -13.46421 -13.25675 -13.14737 -12.92791 -12.84685 -12.64135 -12.47365 -12.21076 -12.14106 -11.99939 -11.75346 -11.64242 -11.50253 -11.43266 -10.88785 -10.76444 -10.57838 -10.27028 -10.13106 -9.93882 -9.69221 -9.60716 -8.91927 -8.86490 -8.52872 -8.35099 -7.01231 -5.78993 -3.09497 0.40260 1.33871 1.78358 2.21598 3.02573 3.22939 3.42711 3.47868 3.50664 4.37157 4.48072 4.55991 4.64091 4.84101 4.89481 4.95446 5.05677 5.07873 5.12899 5.16563 5.34169 5.36774 5.37066 5.43243 5.45470 5.47552 5.52354 5.57184 5.65117 5.75141 5.81929 5.86158 5.98680 6.06324 6.15133 6.18959 6.30493 6.39504 6.56530 6.69811 6.76226 7.00674 7.46052 7.69415 8.21159 8.38881 9.49687 10.06074 10.40032 11.43086 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.032991 B = 0.002413 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.525351 B =11599.788767 C =12094.223616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C -0.227 4.227 4 S 0.220 5.780 5 C -0.262 4.262 6 C 0.583 3.417 7 O -0.527 6.527 8 N -0.597 5.597 9 C 0.063 3.937 10 C 0.126 3.874 11 C -0.182 4.182 12 C 0.173 3.827 13 N -0.706 5.706 14 C -0.245 4.245 15 H 0.073 0.927 16 C -0.012 4.012 17 N -0.929 5.929 18 Si 0.909 3.091 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.291 1.291 22 C -0.169 4.169 23 C -0.051 4.051 24 C -0.122 4.122 25 C -0.094 4.094 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.387 0.613 39 H 0.256 0.744 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.150 0.850 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.097 -27.212 6.775 29.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 C -0.345 4.345 4 S 0.490 5.510 5 C -0.382 4.382 6 C 0.371 3.629 7 O -0.405 6.405 8 N -0.328 5.328 9 C -0.083 4.083 10 C 0.024 3.976 11 C -0.224 4.224 12 C 0.060 3.940 13 N -0.344 5.344 14 C -0.376 4.376 15 H 0.091 0.909 16 C -0.208 4.208 17 N -0.576 5.576 18 Si 0.740 3.260 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.218 1.218 22 C -0.209 4.209 23 C -0.084 4.084 24 C -0.134 4.134 25 C -0.153 4.153 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.139 0.861 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.221 0.779 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.168 0.832 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.105 -26.868 5.441 28.586 hybrid contribution 0.075 0.992 1.235 1.586 sum -8.030 -25.876 6.676 27.904 Atomic orbital electron populations 1.21784 0.94243 1.01948 1.02609 1.20084 0.96187 0.89801 1.03123 1.24679 1.07388 1.02518 0.99937 1.83488 1.59689 1.01945 1.05842 1.24571 1.16333 0.99286 0.98028 1.17075 0.77528 0.86170 0.82161 1.90851 1.52576 1.39401 1.57693 1.47796 1.66290 1.12583 1.06144 1.21952 1.02517 0.87918 0.95892 1.22841 0.95368 0.84117 0.95280 1.24369 1.02006 1.00775 0.95296 1.20931 0.91764 0.85311 0.95989 1.42232 1.84660 0.99686 1.07817 1.19307 1.42039 0.87329 0.88949 0.90864 1.24798 1.02424 0.97267 0.96327 1.69682 1.55509 1.16345 1.16096 0.86095 0.77202 0.81792 0.80925 1.20489 1.21813 1.21820 1.23981 0.97183 1.00251 0.99469 1.20589 0.96808 0.95700 0.95296 1.18609 1.04515 0.93869 0.96410 1.20512 1.01875 1.00959 0.91944 0.92252 0.92364 0.92029 0.90870 0.90197 0.91653 0.88622 0.91027 0.86119 0.90972 0.90781 0.91284 0.77903 0.93389 0.90917 0.90425 0.83221 0.91413 0.91445 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.89 37.16 0.37 -0.49 16 2 C -0.05 -0.34 5.72 -27.88 -0.16 -0.50 16 3 C -0.23 -2.05 5.53 -35.86 -0.20 -2.25 16 4 S 0.22 2.07 17.84 -107.50 -1.92 0.15 16 5 C -0.26 -3.47 6.23 -36.80 -0.23 -3.70 16 6 C 0.58 9.65 7.64 -12.90 -0.10 9.55 16 7 O -0.53 -10.82 16.33 5.18 0.08 -10.74 16 8 N -0.60 -8.86 3.08 -174.58 -0.54 -9.39 16 9 C 0.06 0.65 7.64 59.84 0.46 1.11 16 10 C 0.13 2.18 4.09 -67.12 -0.27 1.90 16 11 C -0.18 -3.11 7.30 -25.83 -0.19 -3.29 16 12 C 0.17 3.37 4.57 -67.03 -0.31 3.06 16 13 N -0.71 -17.70 5.31 -52.55 -0.28 -17.98 16 14 C -0.25 -6.77 9.97 -15.06 -0.15 -6.92 16 15 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 18 Si 0.91 22.37 29.55 -169.99 -5.02 17.34 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 C -0.17 -2.82 7.34 -25.92 -0.19 -3.01 16 23 C -0.05 -0.62 9.81 -40.44 -0.40 -1.02 16 24 C -0.12 -1.22 5.78 -106.45 -0.62 -1.83 16 25 C -0.09 -0.70 9.56 36.00 0.34 -0.35 16 26 H 0.06 0.37 7.79 -51.93 -0.40 -0.03 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.45 7.26 -51.93 -0.38 0.07 16 31 H 0.07 0.60 7.77 -51.93 -0.40 0.20 16 32 H 0.10 0.89 6.09 -51.93 -0.32 0.57 16 33 H 0.07 0.66 4.61 -23.21 -0.11 0.56 16 34 H 0.12 2.51 7.21 -51.93 -0.37 2.14 16 35 H 0.07 1.01 6.66 -51.93 -0.35 0.66 16 36 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 37 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 38 H 0.39 10.48 7.90 -40.82 -0.32 10.16 16 39 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 40 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 41 H 0.08 1.07 6.91 -51.93 -0.36 0.71 16 42 H 0.15 1.85 8.06 -52.49 -0.42 1.43 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.48 8.13 -51.92 -0.42 0.06 16 45 H 0.07 0.41 6.84 -51.93 -0.36 0.05 16 LS Contribution 371.37 15.07 5.60 5.60 Total: -1.00 -32.95 371.37 -9.80 -42.75 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -6.71 Total: 8.07 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -1.73 Total: -8.18 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.09 Total: -54.99 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.08 Total: -10.74 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.34 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -1.92 Total: 0.15 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.95 -9.80 -42.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999797225.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.757 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds