Wall clock time and date at job start Tue Mar 31 2020 13:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50709 * 109.46783 * 2 1 4 4 C 1.37468 * 122.44595 * 265.02021 * 3 2 1 5 5 C 1.36647 * 113.29432 * 179.97438 * 4 3 2 6 6 C 1.46588 * 125.45877 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99657 * 351.40373 * 6 5 4 8 8 N 1.34767 * 120.00060 * 171.40476 * 6 5 4 9 9 C 1.46501 * 120.00404 * 0.13025 * 8 6 5 10 10 C 1.46504 * 119.99935 * 180.13210 * 8 6 5 11 11 C 1.53781 * 113.61324 * 219.13425 * 10 8 6 12 12 C 1.53961 * 87.01901 * 220.05145 * 11 10 8 13 13 N 1.46503 * 113.53320 * 270.81095 * 12 11 10 14 14 C 1.36930 * 120.00417 * 252.49214 * 13 12 11 15 15 H 1.08003 * 120.00030 * 0.02562 * 14 13 12 16 16 C 1.38809 * 120.00451 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00158 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99992 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47086 * 89.99717 * 18 16 14 20 20 H 1.48501 * 109.47200 * 210.00184 * 18 16 14 21 21 H 1.48505 * 109.46918 * 329.99884 * 18 16 14 22 22 C 1.53775 * 87.11207 * 25.36447 * 12 11 10 23 23 S 1.75826 * 109.08611 * 0.02562 * 5 4 3 24 24 C 1.33813 * 122.44779 * 85.00278 * 3 2 1 25 25 C 1.50696 * 124.52591 * 0.03512 * 24 3 2 26 26 H 1.09003 * 109.46880 * 300.00224 * 1 2 3 27 27 H 1.09000 * 109.46703 * 60.00139 * 1 2 3 28 28 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47280 * 240.00091 * 2 1 3 30 30 H 1.08997 * 109.47058 * 119.99499 * 2 1 3 31 31 H 1.07994 * 123.35423 * 359.97438 * 4 3 2 32 32 H 1.09002 * 109.46687 * 83.46395 * 9 8 6 33 33 H 1.08998 * 109.47794 * 203.46605 * 9 8 6 34 34 H 1.09003 * 109.46600 * 323.47172 * 9 8 6 35 35 H 1.08996 * 112.85169 * 350.33212 * 10 8 6 36 36 H 1.09000 * 113.61618 * 334.56722 * 11 10 8 37 37 H 1.08998 * 113.60981 * 105.47443 * 11 10 8 38 38 H 1.08992 * 113.74328 * 139.94905 * 12 11 10 39 39 H 0.97003 * 119.99688 * 72.49651 * 13 12 11 40 40 H 0.97000 * 119.99761 * 179.97438 * 17 16 14 41 41 H 1.09003 * 113.61423 * 220.09495 * 22 12 11 42 42 H 1.09002 * 113.61541 * 89.19025 * 22 12 11 43 43 H 1.09000 * 109.47444 * 180.02562 * 25 24 3 44 44 H 1.08992 * 109.47329 * 300.00471 * 25 24 3 45 45 H 1.08998 * 109.46955 * 60.00750 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3730 2.0827 -1.1557 5 6 2.8044 3.3611 -0.9393 6 6 3.2332 4.3014 -1.9788 7 8 3.3725 3.9185 -3.1256 8 7 3.4732 5.5898 -1.6647 9 6 3.3083 6.0501 -0.2837 10 6 3.8991 6.5302 -2.7042 11 6 4.9697 7.5277 -2.2314 12 6 4.2190 8.5964 -3.0467 13 7 4.6700 8.6952 -4.4371 14 6 5.4118 9.7728 -4.8414 15 1 5.6648 10.5498 -4.1352 16 6 5.8387 9.8667 -6.1589 17 7 6.5521 10.9023 -6.5474 18 14 5.4005 8.5233 -7.3806 19 1 4.1094 8.8522 -8.0362 20 1 6.4667 8.4229 -8.4094 21 1 5.2773 7.2266 -6.6674 22 6 2.9577 7.7352 -2.8679 23 16 2.7639 3.6972 0.7861 24 6 2.1788 2.1306 1.1249 25 6 1.8692 1.6149 2.5066 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.3065 1.6367 -2.1370 32 1 4.2120 5.8274 0.2838 33 1 3.1313 7.1256 -0.2777 34 1 2.4591 5.5395 0.1705 35 1 4.1459 6.0380 -3.6449 36 1 4.9543 7.7079 -1.1566 37 1 5.9679 7.3091 -2.6108 38 1 4.1601 9.5653 -2.5511 39 1 4.4431 7.9972 -5.0713 40 1 6.8507 10.9677 -7.4680 41 1 2.3339 7.6838 -3.7604 42 1 2.3911 7.9723 -1.9674 43 1 2.0760 2.3941 3.2402 44 1 0.8176 1.3338 2.5623 45 1 2.4898 0.7438 2.7168 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999802484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:51 Heat of formation + Delta-G solvation = 30.981078 kcal Electronic energy + Delta-G solvation = -24648.339860 eV Core-core repulsion = 21179.634489 eV Total energy + Delta-G solvation = -3468.705371 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.29750 -39.07287 -37.95079 -35.04148 -33.30350 -32.85570 -31.82374 -30.43913 -27.60373 -27.40579 -25.27766 -24.80504 -24.21802 -23.28331 -22.01494 -20.05578 -18.65562 -18.41450 -18.27212 -17.56394 -16.49048 -16.17394 -15.70375 -15.13317 -14.84901 -14.53851 -14.43025 -14.15917 -13.76649 -13.71080 -13.34873 -13.14226 -13.01734 -12.93318 -12.68573 -12.58885 -12.27387 -12.17539 -12.15656 -12.01422 -11.82930 -11.70973 -11.28519 -10.94118 -10.78934 -10.60048 -10.37245 -10.30777 -9.98479 -9.74112 -9.59742 -8.94685 -8.92971 -8.61118 -8.44707 -7.32947 -5.80357 -3.17242 0.33826 1.27717 1.70202 2.14997 2.92158 3.13781 3.39516 3.44485 3.47322 4.36010 4.46651 4.57852 4.67788 4.73879 4.80673 4.92301 4.94105 4.96675 5.00413 5.13043 5.16815 5.24469 5.30140 5.32329 5.38795 5.42201 5.46179 5.55334 5.59380 5.65198 5.73652 5.77164 5.87296 5.95794 6.04513 6.10402 6.24007 6.24852 6.42642 6.54227 6.61957 6.84539 7.34632 7.95756 8.10742 8.38875 9.16120 9.88745 10.07055 11.37336 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026900 B = 0.002672 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.632731 B =10476.976126 C =11226.379557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.064 4.064 3 C -0.122 4.122 4 C -0.047 4.047 5 C -0.266 4.266 6 C 0.585 3.415 7 O -0.530 6.530 8 N -0.597 5.597 9 C 0.062 3.938 10 C 0.122 3.878 11 C -0.181 4.181 12 C 0.179 3.821 13 N -0.730 5.730 14 C -0.249 4.249 15 H 0.093 0.907 16 C 0.008 3.992 17 N -0.931 5.931 18 Si 0.881 3.119 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.275 1.275 22 C -0.170 4.170 23 S 0.222 5.778 24 C -0.226 4.226 25 C -0.081 4.081 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.149 0.851 32 H 0.066 0.934 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.118 0.882 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.364 0.636 40 H 0.260 0.740 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.075 0.925 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.223 -19.913 21.853 31.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 C -0.134 4.134 4 C -0.080 4.080 5 C -0.386 4.386 6 C 0.372 3.628 7 O -0.409 6.409 8 N -0.328 5.328 9 C -0.083 4.083 10 C 0.020 3.980 11 C -0.222 4.222 12 C 0.066 3.934 13 N -0.370 5.370 14 C -0.379 4.379 15 H 0.111 0.889 16 C -0.188 4.188 17 N -0.578 5.578 18 Si 0.711 3.289 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.201 1.201 22 C -0.210 4.210 23 S 0.492 5.508 24 C -0.345 4.345 25 C -0.139 4.139 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.167 0.833 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.135 0.865 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.197 0.803 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.633 -18.604 22.108 31.148 hybrid contribution -0.590 -2.267 -1.727 2.910 sum -12.223 -20.871 20.381 31.629 Atomic orbital electron populations 1.21729 0.94873 1.01583 1.02206 1.20232 0.95937 0.91436 1.02724 1.18588 1.05050 0.98349 0.91425 1.20573 0.95821 0.91865 0.99736 1.24526 1.16733 1.00361 0.96987 1.17072 0.77362 0.81311 0.87010 1.90836 1.52624 1.77336 1.20068 1.47773 1.66845 1.08663 1.09531 1.21977 1.01535 1.02417 0.82415 1.22858 0.96471 0.87118 0.91525 1.24334 0.99439 0.98161 1.00312 1.20881 0.90834 0.95392 0.86286 1.42569 1.63766 1.25329 1.05299 1.19078 1.25109 0.98485 0.95212 0.88942 1.24670 0.99732 0.97438 0.96968 1.69697 1.40964 1.29798 1.17303 0.86604 0.77982 0.82437 0.81912 1.20916 1.21581 1.20071 1.24002 0.98575 0.96415 1.01995 1.83519 1.60993 1.07439 0.98827 1.24662 1.07802 1.01985 1.00005 1.20327 1.02349 1.01202 0.90059 0.92712 0.92471 0.92419 0.90999 0.91131 0.83317 0.91517 0.88513 0.90947 0.86456 0.90503 0.90589 0.90362 0.80306 0.92947 0.91005 0.89934 0.91533 0.90625 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.89 37.16 0.37 -0.58 16 2 C -0.06 -0.46 5.83 -27.88 -0.16 -0.63 16 3 C -0.12 -1.16 5.04 -106.45 -0.54 -1.69 16 4 C -0.05 -0.55 9.79 -40.44 -0.40 -0.94 16 5 C -0.27 -3.35 6.23 -36.79 -0.23 -3.57 16 6 C 0.58 9.18 7.64 -12.90 -0.10 9.08 16 7 O -0.53 -10.38 16.33 5.19 0.08 -10.29 16 8 N -0.60 -8.33 3.08 -174.57 -0.54 -8.87 16 9 C 0.06 0.60 7.64 59.85 0.46 1.06 16 10 C 0.12 1.98 4.09 -67.11 -0.27 1.71 16 11 C -0.18 -2.91 7.30 -25.82 -0.19 -3.10 16 12 C 0.18 3.30 4.57 -67.03 -0.31 2.99 16 13 N -0.73 -17.17 5.11 -52.55 -0.27 -17.44 16 14 C -0.25 -6.96 10.45 -15.06 -0.16 -7.12 16 15 H 0.09 2.73 8.06 -52.48 -0.42 2.31 16 16 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 17 N -0.93 -29.16 13.97 55.49 0.78 -28.38 16 18 Si 0.88 22.48 27.74 -169.99 -4.71 17.77 16 19 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 20 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 21 H -0.27 -6.75 6.52 56.52 0.37 -6.38 16 22 C -0.17 -2.63 7.34 -25.92 -0.19 -2.82 16 23 S 0.22 1.96 17.83 -107.50 -1.92 0.04 16 24 C -0.23 -1.92 6.28 -35.86 -0.23 -2.15 16 25 C -0.08 -0.46 9.44 36.00 0.34 -0.12 16 26 H 0.05 0.34 7.41 -51.93 -0.38 -0.05 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 30 H 0.07 0.43 7.45 -51.93 -0.39 0.05 16 31 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.07 0.57 7.76 -51.93 -0.40 0.17 16 33 H 0.10 0.82 6.09 -51.93 -0.32 0.50 16 34 H 0.07 0.62 4.61 -23.24 -0.11 0.51 16 35 H 0.12 2.26 7.21 -51.93 -0.37 1.89 16 36 H 0.08 1.01 6.66 -51.93 -0.35 0.66 16 37 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 38 H 0.08 1.43 8.10 -51.93 -0.42 1.00 16 39 H 0.36 8.62 5.76 -40.82 -0.24 8.39 16 40 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 41 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.08 1.05 6.91 -51.93 -0.36 0.69 16 43 H 0.07 0.31 8.11 -51.93 -0.42 -0.11 16 44 H 0.08 0.37 7.41 -51.93 -0.38 -0.01 16 45 H 0.08 0.38 7.92 -51.93 -0.41 -0.03 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -33.72 368.32 -9.40 -43.12 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -6.68 Total: 6.23 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.70 Total: -7.73 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.03 Total: -54.69 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.29 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -4.71 Total: 17.77 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -1.92 Total: 0.04 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.72 -9.40 -43.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999802484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.103 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds