Wall clock time and date at job start Tue Mar 31 2020 13:12:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50709 * 109.46783 * 2 1 4 4 C 1.37468 * 122.44595 * 265.02021 * 3 2 1 5 5 C 1.36647 * 113.29432 * 179.97438 * 4 3 2 6 6 C 1.46588 * 125.45877 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99657 * 351.40373 * 6 5 4 8 8 N 1.34767 * 120.00060 * 171.40476 * 6 5 4 9 9 C 1.46501 * 120.00404 * 0.13025 * 8 6 5 10 10 C 1.46504 * 119.99935 * 180.13210 * 8 6 5 11 11 C 1.53781 * 113.61324 * 219.13425 * 10 8 6 12 12 C 1.53961 * 87.01901 * 220.05145 * 11 10 8 13 13 N 1.46503 * 113.53320 * 270.81095 * 12 11 10 14 14 C 1.36930 * 120.00417 * 252.49214 * 13 12 11 15 15 H 1.08003 * 120.00030 * 0.02562 * 14 13 12 16 16 C 1.38809 * 120.00451 * 180.02562 * 14 13 12 17 17 N 1.31620 * 120.00158 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99992 * 0.02562 * 16 14 13 19 19 H 1.48497 * 109.47086 * 89.99717 * 18 16 14 20 20 H 1.48501 * 109.47200 * 210.00184 * 18 16 14 21 21 H 1.48505 * 109.46918 * 329.99884 * 18 16 14 22 22 C 1.53775 * 87.11207 * 25.36447 * 12 11 10 23 23 S 1.75826 * 109.08611 * 0.02562 * 5 4 3 24 24 C 1.33813 * 122.44779 * 85.00278 * 3 2 1 25 25 C 1.50696 * 124.52591 * 0.03512 * 24 3 2 26 26 H 1.09003 * 109.46880 * 300.00224 * 1 2 3 27 27 H 1.09000 * 109.46703 * 60.00139 * 1 2 3 28 28 H 1.09001 * 109.47212 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47280 * 240.00091 * 2 1 3 30 30 H 1.08997 * 109.47058 * 119.99499 * 2 1 3 31 31 H 1.07994 * 123.35423 * 359.97438 * 4 3 2 32 32 H 1.09002 * 109.46687 * 83.46395 * 9 8 6 33 33 H 1.08998 * 109.47794 * 203.46605 * 9 8 6 34 34 H 1.09003 * 109.46600 * 323.47172 * 9 8 6 35 35 H 1.08996 * 112.85169 * 350.33212 * 10 8 6 36 36 H 1.09000 * 113.61618 * 334.56722 * 11 10 8 37 37 H 1.08998 * 113.60981 * 105.47443 * 11 10 8 38 38 H 1.08992 * 113.74328 * 139.94905 * 12 11 10 39 39 H 0.97003 * 119.99688 * 72.49651 * 13 12 11 40 40 H 0.97000 * 119.99761 * 179.97438 * 17 16 14 41 41 H 1.09003 * 113.61423 * 220.09495 * 22 12 11 42 42 H 1.09002 * 113.61541 * 89.19025 * 22 12 11 43 43 H 1.09000 * 109.47444 * 180.02562 * 25 24 3 44 44 H 1.08992 * 109.47329 * 300.00471 * 25 24 3 45 45 H 1.08998 * 109.46955 * 60.00750 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3730 2.0827 -1.1557 5 6 2.8044 3.3611 -0.9393 6 6 3.2332 4.3014 -1.9788 7 8 3.3725 3.9185 -3.1256 8 7 3.4732 5.5898 -1.6647 9 6 3.3083 6.0501 -0.2837 10 6 3.8991 6.5302 -2.7042 11 6 4.9697 7.5277 -2.2314 12 6 4.2190 8.5964 -3.0467 13 7 4.6700 8.6952 -4.4371 14 6 5.4118 9.7728 -4.8414 15 1 5.6648 10.5498 -4.1352 16 6 5.8387 9.8667 -6.1589 17 7 6.5521 10.9023 -6.5474 18 14 5.4005 8.5233 -7.3806 19 1 4.1094 8.8522 -8.0362 20 1 6.4667 8.4229 -8.4094 21 1 5.2773 7.2266 -6.6674 22 6 2.9577 7.7352 -2.8679 23 16 2.7639 3.6972 0.7861 24 6 2.1788 2.1306 1.1249 25 6 1.8692 1.6149 2.5066 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.3065 1.6367 -2.1370 32 1 4.2120 5.8274 0.2838 33 1 3.1313 7.1256 -0.2777 34 1 2.4591 5.5395 0.1705 35 1 4.1459 6.0380 -3.6449 36 1 4.9543 7.7079 -1.1566 37 1 5.9679 7.3091 -2.6108 38 1 4.1601 9.5653 -2.5511 39 1 4.4431 7.9972 -5.0713 40 1 6.8507 10.9677 -7.4680 41 1 2.3339 7.6838 -3.7604 42 1 2.3911 7.9723 -1.9674 43 1 2.0760 2.3941 3.2402 44 1 0.8176 1.3338 2.5623 45 1 2.4898 0.7438 2.7168 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999802484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:51 Heat of formation + Delta-G solvation = 9.763441 kcal Electronic energy + Delta-G solvation = -24649.259926 eV Core-core repulsion = 21179.634489 eV Total energy + Delta-G solvation = -3469.625437 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.48809 -39.99053 -39.13445 -36.41818 -34.94373 -33.78067 -32.55144 -32.26113 -28.49580 -28.28885 -26.61189 -26.19202 -24.80679 -24.79164 -23.27817 -21.07999 -20.02281 -19.71656 -19.30523 -19.01133 -17.67054 -17.03901 -16.76140 -16.57793 -16.22225 -15.86955 -15.25485 -15.09188 -14.78135 -14.71876 -14.55939 -14.36537 -14.28285 -13.78839 -13.61469 -13.59078 -13.53826 -13.40969 -13.20913 -12.91818 -12.82057 -12.59615 -12.42041 -12.35907 -12.22895 -11.87660 -11.81565 -11.81280 -11.33390 -11.27554 -11.06292 -10.94160 -9.92012 -9.44513 -9.34811 -9.25086 -8.06189 -5.39090 -0.50066 0.49700 0.96509 1.31543 1.34825 1.36220 1.42327 1.85417 2.08331 2.43492 3.23875 3.38764 3.49417 3.69984 3.75690 3.86984 4.01102 4.08032 4.18061 4.18432 4.19566 4.39884 4.46034 4.51207 4.62491 4.64926 4.69775 4.73564 4.77607 4.79785 4.91217 4.97032 4.98283 5.04726 5.11599 5.15712 5.16847 5.23144 5.30975 5.45503 5.55257 5.57820 5.76854 6.19577 6.25087 6.97185 7.03512 7.80713 7.96726 9.14843 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026900 B = 0.002672 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.632731 B =10476.976126 C =11226.379557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.063 4.063 3 C -0.138 4.138 4 C -0.053 4.053 5 C -0.308 4.308 6 C 0.576 3.424 7 O -0.588 6.588 8 N -0.593 5.593 9 C 0.050 3.950 10 C 0.123 3.877 11 C -0.162 4.162 12 C 0.158 3.842 13 N -0.739 5.739 14 C -0.227 4.227 15 H 0.069 0.931 16 C -0.058 4.058 17 N -0.978 5.978 18 Si 0.943 3.057 19 H -0.277 1.277 20 H -0.294 1.294 21 H -0.265 1.265 22 C -0.148 4.148 23 S 0.282 5.718 24 C -0.217 4.217 25 C -0.084 4.084 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.084 0.916 33 H 0.118 0.882 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.118 0.882 37 H 0.049 0.951 38 H 0.084 0.916 39 H 0.362 0.638 40 H 0.258 0.742 41 H 0.059 0.941 42 H 0.123 0.877 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.894 -21.424 25.723 36.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.102 4.102 3 C -0.149 4.149 4 C -0.088 4.088 5 C -0.428 4.428 6 C 0.367 3.633 7 O -0.470 6.470 8 N -0.323 5.323 9 C -0.093 4.093 10 C 0.019 3.981 11 C -0.203 4.203 12 C 0.048 3.952 13 N -0.380 5.380 14 C -0.358 4.358 15 H 0.087 0.913 16 C -0.250 4.250 17 N -0.629 5.629 18 Si 0.772 3.228 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.191 1.191 22 C -0.188 4.188 23 S 0.553 5.447 24 C -0.336 4.336 25 C -0.142 4.142 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.150 0.850 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.136 0.864 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.195 0.805 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.141 0.859 43 H 0.100 0.900 44 H 0.107 0.893 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.340 -20.129 26.071 35.536 hybrid contribution -0.105 -1.819 -2.711 3.267 sum -13.445 -21.948 23.360 34.759 Atomic orbital electron populations 1.21712 0.94285 1.02349 1.01776 1.20277 0.96397 0.90229 1.03320 1.18708 1.05832 0.99513 0.90841 1.20678 0.95866 0.92087 1.00125 1.24344 1.19158 1.00249 0.99006 1.17576 0.76655 0.82084 0.87030 1.90790 1.55254 1.78419 1.22571 1.47772 1.65992 1.07810 1.10741 1.22352 1.03102 1.03869 0.79992 1.22516 0.96975 0.87542 0.91044 1.24180 0.97613 0.96391 1.02122 1.21210 0.93176 0.96800 0.84055 1.42623 1.63673 1.24061 1.07653 1.19095 1.23662 0.98534 0.94522 0.91266 1.25366 1.00810 0.99771 0.99039 1.69845 1.43341 1.32093 1.17597 0.85586 0.77537 0.80186 0.79515 1.20317 1.22058 1.19067 1.23885 0.97206 0.94413 1.03290 1.83079 1.59688 1.07161 0.94762 1.25158 1.05558 1.01723 1.01175 1.20501 1.03404 1.02129 0.88206 0.92022 0.93974 0.91088 0.91524 0.89434 0.85017 0.89729 0.86405 0.89543 0.90332 0.86402 0.93170 0.89757 0.80540 0.93294 0.92242 0.85904 0.90030 0.89331 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.89 71.98 0.71 -0.88 16 2 C -0.06 -0.80 5.83 29.85 0.17 -0.63 16 3 C -0.14 -2.39 5.04 -21.05 -0.11 -2.49 16 4 C -0.05 -1.25 9.79 21.72 0.21 -1.04 16 5 C -0.31 -7.55 6.23 24.08 0.15 -7.40 16 6 C 0.58 18.30 7.64 86.42 0.66 18.96 16 7 O -0.59 -24.33 16.33 -4.36 -0.07 -24.41 16 8 N -0.59 -15.73 3.08 -824.44 -2.54 -18.27 16 9 C 0.05 0.78 7.64 127.77 0.98 1.76 16 10 C 0.12 3.89 4.09 45.52 0.19 4.08 16 11 C -0.16 -4.95 7.30 31.18 0.23 -4.72 16 12 C 0.16 5.63 4.57 45.58 0.21 5.83 16 13 N -0.74 -34.91 5.11 -320.18 -1.64 -36.55 16 14 C -0.23 -12.91 10.45 84.03 0.88 -12.03 16 15 H 0.07 4.19 8.06 -2.91 -0.02 4.17 16 16 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 17 N -0.98 -63.07 13.97 21.65 0.30 -62.77 16 18 Si 0.94 47.68 27.74 68.60 1.90 49.59 16 19 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.29 -14.96 7.11 99.48 0.71 -14.25 16 21 H -0.27 -12.81 6.52 99.48 0.65 -12.16 16 22 C -0.15 -4.30 7.34 31.12 0.23 -4.07 16 23 S 0.28 4.08 17.83 -56.49 -1.01 3.07 16 24 C -0.22 -3.00 6.28 24.68 0.15 -2.84 16 25 C -0.08 -0.58 9.44 71.23 0.67 0.09 16 26 H 0.06 0.59 7.41 -2.39 -0.02 0.57 16 27 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 30 H 0.09 0.81 7.45 -2.39 -0.02 0.79 16 31 H 0.13 3.40 8.06 -2.91 -0.02 3.38 16 32 H 0.08 1.07 7.76 -2.39 -0.02 1.05 16 33 H 0.12 1.37 6.09 -2.39 -0.01 1.36 16 34 H 0.09 1.13 4.61 -20.63 -0.10 1.03 16 35 H 0.08 3.15 7.21 -2.39 -0.02 3.13 16 36 H 0.12 2.63 6.66 -2.39 -0.02 2.61 16 37 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.08 2.92 8.10 -2.39 -0.02 2.90 16 39 H 0.36 17.26 5.76 -92.71 -0.53 16.73 16 40 H 0.26 15.92 8.31 -92.71 -0.77 15.14 16 41 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.12 2.59 6.91 -2.39 -0.02 2.57 16 43 H 0.08 0.36 8.11 -2.39 -0.02 0.34 16 44 H 0.09 0.46 7.41 -2.39 -0.02 0.45 16 45 H 0.09 0.48 7.92 -2.39 -0.02 0.46 16 Total: -1.00 -77.75 368.32 3.07 -74.68 By element: Atomic # 1 Polarization: 22.72 SS G_CDS: 0.32 Total: 23.05 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 5.80 Total: -8.39 kcal Atomic # 7 Polarization: -113.71 SS G_CDS: -3.88 Total: -117.59 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -0.07 Total: -24.41 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.90 Total: 49.59 kcal Atomic # 16 Polarization: 4.08 SS G_CDS: -1.01 Total: 3.07 kcal Total: -77.75 3.07 -74.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999802484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.443 kcal (2) G-P(sol) polarization free energy of solvation -77.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds