Wall clock time and date at job start Tue Mar 31 2020 13:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46947 * 2 1 4 4 C 1.50701 * 109.46934 * 119.99657 * 2 1 3 5 5 C 1.37468 * 123.35393 * 297.06866 * 4 2 1 6 6 C 1.33815 * 115.10233 * 179.97438 * 5 4 2 7 7 S 1.70617 * 110.95525 * 359.97438 * 6 5 4 8 8 C 1.36649 * 123.34739 * 116.77078 * 4 2 1 9 9 C 1.46577 * 125.46264 * 0.04036 * 8 4 2 10 10 O 1.21701 * 120.00334 * 92.37747 * 9 8 4 11 11 N 1.34784 * 119.99972 * 272.38285 * 9 8 4 12 12 C 1.46501 * 119.99615 * 4.29133 * 11 9 8 13 13 C 1.46492 * 119.99794 * 184.29230 * 11 9 8 14 14 C 1.53786 * 113.61105 * 219.13365 * 13 11 9 15 15 C 1.53961 * 87.01885 * 220.04976 * 14 13 11 16 16 N 1.46498 * 113.54100 * 270.81095 * 15 14 13 17 17 C 1.36935 * 119.99873 * 252.49948 * 16 15 14 18 18 H 1.07994 * 120.00418 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99715 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00201 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00221 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46919 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47535 * 119.99714 * 21 19 17 24 24 H 1.48495 * 109.47340 * 239.99900 * 21 19 17 25 25 C 1.53783 * 87.11274 * 25.36386 * 15 14 13 26 26 H 1.08998 * 109.46717 * 300.00188 * 1 2 3 27 27 H 1.09002 * 109.46959 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46891 * 59.99967 * 1 2 3 29 29 H 1.08998 * 109.46717 * 239.99812 * 2 1 3 30 30 H 1.08998 * 109.47527 * 59.99776 * 3 2 1 31 31 H 1.09002 * 109.46663 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47179 * 300.00061 * 3 2 1 33 33 H 1.08001 * 122.44850 * 359.94654 * 5 4 2 34 34 H 1.08003 * 124.52316 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47133 * 84.98066 * 12 11 9 36 36 H 1.08998 * 109.46608 * 204.98257 * 12 11 9 37 37 H 1.08998 * 109.47392 * 324.97999 * 12 11 9 38 38 H 1.08993 * 112.85708 * 350.33050 * 13 11 9 39 39 H 1.09001 * 113.61388 * 334.56713 * 14 13 11 40 40 H 1.08997 * 113.61273 * 105.47576 * 14 13 11 41 41 H 1.09005 * 113.74154 * 139.94105 * 15 14 13 42 42 H 0.96999 * 119.99695 * 72.49199 * 16 15 14 43 43 H 0.96993 * 120.00467 * 179.97438 * 20 19 17 44 44 H 1.08995 * 113.61787 * 220.09423 * 25 15 14 45 45 H 1.09003 * 113.61518 * 89.18293 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.7916 -0.2682 2.5097 6 6 2.3150 -1.0262 3.4803 7 16 3.1531 -2.3611 2.8271 8 6 2.7675 -1.8614 1.1859 9 6 3.1720 -2.5654 -0.0344 10 8 4.2467 -2.3205 -0.5504 11 7 2.3537 -3.4839 -0.5852 12 6 1.0217 -3.7114 -0.0193 13 6 2.7963 -4.2547 -1.7497 14 6 1.6900 -4.4844 -2.7929 15 6 2.2487 -5.9101 -2.9533 16 7 3.2982 -6.0165 -3.9699 17 6 3.0350 -6.6337 -5.1636 18 1 2.0541 -7.0425 -5.3555 19 6 4.0293 -6.7339 -6.1270 20 7 5.2248 -6.2353 -5.8934 21 14 3.6708 -7.5765 -7.7551 22 1 2.2627 -8.0482 -7.7688 23 1 3.8821 -6.6153 -8.8672 24 1 4.5825 -8.7365 -7.9236 25 6 2.7905 -5.7753 -1.5204 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.2222 0.6260 2.7162 34 1 2.2196 -0.8205 4.5363 35 1 0.3210 -2.9887 -0.4374 36 1 0.6911 -4.7210 -0.2629 37 1 1.0621 -3.5937 1.0636 38 1 3.7274 -3.8810 -2.1757 39 1 0.6835 -4.4543 -2.3758 40 1 1.7978 -3.8693 -3.6863 41 1 1.4783 -6.6741 -3.0587 42 1 4.1794 -5.6495 -3.7974 43 1 5.9197 -6.3057 -6.5664 44 1 3.7852 -6.2007 -1.3878 45 1 2.0852 -6.0987 -0.7547 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999875341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:07 Heat of formation + Delta-G solvation = 27.274394 kcal Electronic energy + Delta-G solvation = -25277.623769 eV Core-core repulsion = 21808.757664 eV Total energy + Delta-G solvation = -3468.866105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.34167 -38.90286 -37.70119 -34.77845 -34.30336 -32.97204 -30.21906 -29.44445 -27.41392 -26.98652 -25.40256 -25.08442 -24.10494 -22.80864 -22.06678 -20.63721 -18.29867 -18.25141 -17.69015 -17.38484 -16.67438 -16.38599 -15.34573 -15.00789 -14.84166 -14.28966 -14.01576 -13.91325 -13.75458 -13.68063 -13.30197 -13.05548 -12.79845 -12.68995 -12.44004 -12.33164 -12.20343 -12.00015 -11.91493 -11.66049 -11.51623 -11.32992 -10.99207 -10.88871 -10.84969 -10.76640 -10.25799 -10.13176 -10.00350 -9.69019 -9.60506 -8.92179 -8.88335 -8.64128 -8.42577 -7.00908 -5.78835 -3.09266 0.58740 1.15154 1.74565 2.35884 2.80203 3.18047 3.42769 3.47999 3.50739 4.46637 4.55023 4.56224 4.71073 4.91303 4.97695 5.10247 5.13073 5.15252 5.19050 5.33353 5.39371 5.40942 5.42952 5.46408 5.52734 5.61087 5.64369 5.78686 5.85825 5.86469 5.92656 5.98607 6.07176 6.08388 6.16434 6.21384 6.26311 6.40503 6.56741 6.70236 6.77820 7.01492 7.47960 7.69732 8.19082 8.39044 9.49885 10.06306 10.40313 11.43258 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021299 B = 0.002883 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.310416 B = 9708.162955 C =10090.054178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C -0.141 4.141 4 C -0.051 4.051 5 C -0.131 4.131 6 C -0.251 4.251 7 S 0.215 5.785 8 C -0.244 4.244 9 C 0.586 3.414 10 O -0.523 6.523 11 N -0.589 5.589 12 C 0.079 3.921 13 C 0.123 3.877 14 C -0.181 4.181 15 C 0.173 3.827 16 N -0.706 5.706 17 C -0.245 4.245 18 H 0.073 0.927 19 C -0.011 4.011 20 N -0.929 5.929 21 Si 0.908 3.092 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C -0.168 4.168 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.140 0.860 34 H 0.166 0.834 35 H 0.056 0.944 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.119 0.881 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.387 0.613 43 H 0.256 0.744 44 H 0.071 0.929 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.620 12.110 20.792 26.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.062 4.062 3 C -0.199 4.199 4 C -0.065 4.065 5 C -0.162 4.162 6 C -0.388 4.388 7 S 0.484 5.516 8 C -0.364 4.364 9 C 0.371 3.629 10 O -0.399 6.399 11 N -0.321 5.321 12 C -0.065 4.065 13 C 0.021 3.979 14 C -0.223 4.223 15 C 0.060 3.940 16 N -0.344 5.344 17 C -0.376 4.376 18 H 0.091 0.909 19 C -0.208 4.208 20 N -0.576 5.576 21 Si 0.739 3.261 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.208 4.208 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.158 0.842 34 H 0.184 0.816 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.221 0.779 43 H 0.066 0.934 44 H 0.090 0.910 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.269 10.892 21.010 25.798 hybrid contribution -0.693 1.062 -1.186 1.736 sum -10.962 11.954 19.824 25.614 Atomic orbital electron populations 1.21834 0.93861 1.02156 1.01986 1.19889 0.95976 0.96039 0.94341 1.21803 1.01601 0.94619 1.01842 1.19269 0.97552 0.93783 0.95878 1.19722 1.03599 1.02059 0.90844 1.25174 1.06890 1.02406 1.04372 1.83221 1.49997 1.23845 0.94552 1.24462 1.10480 1.03203 0.98299 1.17102 0.84161 0.79109 0.82574 1.90871 1.22513 1.63954 1.62606 1.47896 1.15549 1.37663 1.31018 1.21753 0.83799 1.02476 0.98443 1.22846 1.00043 0.90287 0.84693 1.24337 0.96844 1.02753 0.98337 1.20937 0.92006 0.93505 0.87579 1.42227 1.10271 1.67991 1.13911 1.19306 0.96905 1.29524 0.91886 0.90874 1.24792 0.95813 1.01372 0.98795 1.69680 1.02691 1.50354 1.34918 0.86101 0.77345 0.78775 0.83835 1.20486 1.21817 1.21823 1.23981 1.02214 0.95055 0.99598 0.92453 0.92388 0.92061 0.90303 0.92503 0.92316 0.92086 0.84207 0.81650 0.92502 0.90205 0.91678 0.86278 0.90952 0.90866 0.91321 0.77922 0.93395 0.90994 0.90377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.07 37.16 0.34 -0.82 16 2 C -0.04 -0.44 3.13 -91.77 -0.29 -0.72 16 3 C -0.14 -1.31 9.01 37.16 0.33 -0.97 16 4 C -0.05 -0.56 4.72 -105.48 -0.50 -1.06 16 5 C -0.13 -1.16 9.12 -41.41 -0.38 -1.54 16 6 C -0.25 -2.08 10.92 29.18 0.32 -1.76 16 7 S 0.22 2.19 23.08 -107.50 -2.48 -0.29 16 8 C -0.24 -3.13 4.35 -36.80 -0.16 -3.29 16 9 C 0.59 9.45 6.40 -12.89 -0.08 9.37 16 10 O -0.52 -10.74 16.58 5.19 0.09 -10.65 16 11 N -0.59 -8.59 3.08 -174.58 -0.54 -9.13 16 12 C 0.08 0.84 8.91 59.85 0.53 1.37 16 13 C 0.12 2.12 4.10 -67.12 -0.27 1.84 16 14 C -0.18 -3.07 7.31 -25.82 -0.19 -3.26 16 15 C 0.17 3.36 4.57 -67.02 -0.31 3.06 16 16 N -0.71 -17.67 5.31 -52.55 -0.28 -17.95 16 17 C -0.25 -6.76 9.97 -15.06 -0.15 -6.91 16 18 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 21 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 C -0.17 -2.80 7.34 -25.91 -0.19 -2.99 16 26 H 0.06 0.40 7.95 -51.93 -0.41 -0.02 16 27 H 0.06 0.48 7.10 -51.93 -0.37 0.11 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 1.03 7.12 -51.93 -0.37 0.66 16 30 H 0.06 0.43 7.62 -51.93 -0.40 0.04 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.14 0.96 7.79 -52.49 -0.41 0.55 16 34 H 0.17 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.06 0.55 7.10 -51.93 -0.37 0.18 16 36 H 0.08 0.78 6.14 -51.93 -0.32 0.46 16 37 H 0.06 0.62 7.00 -51.93 -0.36 0.25 16 38 H 0.12 2.47 7.20 -51.93 -0.37 2.09 16 39 H 0.07 1.02 6.70 -51.93 -0.35 0.67 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 42 H 0.39 10.45 7.90 -40.82 -0.32 10.13 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.08 1.08 6.89 -51.93 -0.36 0.72 16 LS Contribution 375.91 15.07 5.66 5.66 Total: -1.00 -32.50 375.91 -9.85 -42.34 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.91 Total: 8.36 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.09 Total: -8.10 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.09 Total: -54.63 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.09 Total: -10.65 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.48 Total: -0.29 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.50 -9.85 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999875341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.619 kcal (2) G-P(sol) polarization free energy of solvation -32.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds