Wall clock time and date at job start Tue Mar 31 2020 13:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46947 * 2 1 4 4 C 1.50701 * 109.46934 * 119.99657 * 2 1 3 5 5 C 1.37468 * 123.35393 * 297.06866 * 4 2 1 6 6 C 1.33815 * 115.10233 * 179.97438 * 5 4 2 7 7 S 1.70617 * 110.95525 * 359.97438 * 6 5 4 8 8 C 1.36649 * 123.34739 * 116.77078 * 4 2 1 9 9 C 1.46577 * 125.46264 * 0.04036 * 8 4 2 10 10 O 1.21701 * 120.00334 * 92.37747 * 9 8 4 11 11 N 1.34784 * 119.99972 * 272.38285 * 9 8 4 12 12 C 1.46501 * 119.99615 * 4.29133 * 11 9 8 13 13 C 1.46492 * 119.99794 * 184.29230 * 11 9 8 14 14 C 1.53786 * 113.61105 * 219.13365 * 13 11 9 15 15 C 1.53961 * 87.01885 * 220.04976 * 14 13 11 16 16 N 1.46498 * 113.54100 * 270.81095 * 15 14 13 17 17 C 1.36935 * 119.99873 * 252.49948 * 16 15 14 18 18 H 1.07994 * 120.00418 * 359.97438 * 17 16 15 19 19 C 1.38813 * 119.99715 * 179.97438 * 17 16 15 20 20 N 1.31623 * 120.00201 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00221 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46919 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47535 * 119.99714 * 21 19 17 24 24 H 1.48495 * 109.47340 * 239.99900 * 21 19 17 25 25 C 1.53783 * 87.11274 * 25.36386 * 15 14 13 26 26 H 1.08998 * 109.46717 * 300.00188 * 1 2 3 27 27 H 1.09002 * 109.46959 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46891 * 59.99967 * 1 2 3 29 29 H 1.08998 * 109.46717 * 239.99812 * 2 1 3 30 30 H 1.08998 * 109.47527 * 59.99776 * 3 2 1 31 31 H 1.09002 * 109.46663 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47179 * 300.00061 * 3 2 1 33 33 H 1.08001 * 122.44850 * 359.94654 * 5 4 2 34 34 H 1.08003 * 124.52316 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47133 * 84.98066 * 12 11 9 36 36 H 1.08998 * 109.46608 * 204.98257 * 12 11 9 37 37 H 1.08998 * 109.47392 * 324.97999 * 12 11 9 38 38 H 1.08993 * 112.85708 * 350.33050 * 13 11 9 39 39 H 1.09001 * 113.61388 * 334.56713 * 14 13 11 40 40 H 1.08997 * 113.61273 * 105.47576 * 14 13 11 41 41 H 1.09005 * 113.74154 * 139.94105 * 15 14 13 42 42 H 0.96999 * 119.99695 * 72.49199 * 16 15 14 43 43 H 0.96993 * 120.00467 * 179.97438 * 20 19 17 44 44 H 1.08995 * 113.61787 * 220.09423 * 25 15 14 45 45 H 1.09003 * 113.61518 * 89.18293 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.7916 -0.2682 2.5097 6 6 2.3150 -1.0262 3.4803 7 16 3.1531 -2.3611 2.8271 8 6 2.7675 -1.8614 1.1859 9 6 3.1720 -2.5654 -0.0344 10 8 4.2467 -2.3205 -0.5504 11 7 2.3537 -3.4839 -0.5852 12 6 1.0217 -3.7114 -0.0193 13 6 2.7963 -4.2547 -1.7497 14 6 1.6900 -4.4844 -2.7929 15 6 2.2487 -5.9101 -2.9533 16 7 3.2982 -6.0165 -3.9699 17 6 3.0350 -6.6337 -5.1636 18 1 2.0541 -7.0425 -5.3555 19 6 4.0293 -6.7339 -6.1270 20 7 5.2248 -6.2353 -5.8934 21 14 3.6708 -7.5765 -7.7551 22 1 2.2627 -8.0482 -7.7688 23 1 3.8821 -6.6153 -8.8672 24 1 4.5825 -8.7365 -7.9236 25 6 2.7905 -5.7753 -1.5204 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.2222 0.6260 2.7162 34 1 2.2196 -0.8205 4.5363 35 1 0.3210 -2.9887 -0.4374 36 1 0.6911 -4.7210 -0.2629 37 1 1.0621 -3.5937 1.0636 38 1 3.7274 -3.8810 -2.1757 39 1 0.6835 -4.4543 -2.3758 40 1 1.7978 -3.8693 -3.6863 41 1 1.4783 -6.6741 -3.0587 42 1 4.1794 -5.6495 -3.7974 43 1 5.9197 -6.3057 -6.5664 44 1 3.7852 -6.2007 -1.3878 45 1 2.0852 -6.0987 -0.7547 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999875341.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:06 Heat of formation + Delta-G solvation = 7.359004 kcal Electronic energy + Delta-G solvation = -25278.487365 eV Core-core repulsion = 21808.757664 eV Total energy + Delta-G solvation = -3469.729701 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.54795 -39.98677 -38.96357 -36.25511 -35.03305 -34.80250 -31.92208 -30.61400 -28.22670 -27.88537 -26.71528 -26.43083 -25.69777 -24.26631 -22.80089 -21.80124 -19.73347 -19.56077 -19.09858 -18.50933 -17.95925 -17.39992 -16.70635 -16.44226 -16.04736 -15.71025 -15.26036 -15.08165 -14.68658 -14.65458 -14.49064 -14.34901 -14.15647 -13.60641 -13.45526 -13.33987 -13.24755 -13.21577 -13.15012 -12.94041 -12.81380 -12.52313 -12.36879 -12.11844 -12.06669 -11.85323 -11.75776 -11.72153 -11.61760 -11.33615 -11.05307 -10.90661 -9.71287 -9.66416 -9.39846 -9.05783 -7.96128 -5.26819 -0.20394 0.28377 1.01825 1.47124 1.48451 1.58672 1.59966 1.65803 2.04241 2.54762 3.35676 3.45833 3.66067 3.80269 3.82269 3.84010 3.91890 4.21726 4.23972 4.24458 4.27233 4.32040 4.44951 4.59917 4.61440 4.71884 4.74818 4.79219 4.79728 4.84634 4.96942 5.00720 5.06100 5.07117 5.14360 5.20860 5.24135 5.28630 5.38401 5.44025 5.50428 5.51198 5.64811 6.24714 6.30178 6.98669 7.29948 8.05205 8.27268 9.27694 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021299 B = 0.002883 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.310416 B = 9708.162955 C =10090.054178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.046 4.046 3 C -0.139 4.139 4 C -0.039 4.039 5 C -0.139 4.139 6 C -0.226 4.226 7 S 0.215 5.785 8 C -0.286 4.286 9 C 0.584 3.416 10 O -0.586 6.586 11 N -0.584 5.584 12 C 0.072 3.928 13 C 0.125 3.875 14 C -0.159 4.159 15 C 0.156 3.844 16 N -0.724 5.724 17 C -0.241 4.241 18 H 0.086 0.914 19 C -0.080 4.080 20 N -0.973 5.973 21 Si 0.977 3.023 22 H -0.259 1.259 23 H -0.296 1.296 24 H -0.294 1.294 25 C -0.147 4.147 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.041 0.959 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.066 0.934 33 H 0.169 0.831 34 H 0.200 0.800 35 H 0.070 0.930 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.044 0.956 41 H 0.084 0.916 42 H 0.370 0.630 43 H 0.250 0.750 44 H 0.050 0.950 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.300 12.573 23.416 30.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.066 4.066 3 C -0.196 4.196 4 C -0.054 4.054 5 C -0.169 4.169 6 C -0.363 4.363 7 S 0.483 5.517 8 C -0.406 4.406 9 C 0.371 3.629 10 O -0.468 6.468 11 N -0.314 5.314 12 C -0.070 4.070 13 C 0.021 3.979 14 C -0.200 4.200 15 C 0.045 3.955 16 N -0.362 5.362 17 C -0.372 4.372 18 H 0.103 0.897 19 C -0.272 4.272 20 N -0.624 5.624 21 Si 0.806 3.194 22 H -0.183 1.183 23 H -0.224 1.224 24 H -0.222 1.222 25 C -0.187 4.187 26 H 0.097 0.903 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.186 0.814 34 H 0.217 0.783 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.063 0.937 41 H 0.102 0.898 42 H 0.201 0.799 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.051 11.339 23.685 29.782 hybrid contribution 0.389 0.991 -1.871 2.153 sum -13.662 12.330 21.814 28.540 Atomic orbital electron populations 1.21804 0.91633 1.02580 1.03217 1.19917 0.97772 0.96148 0.92797 1.21797 1.00196 0.94238 1.03386 1.19508 0.96167 0.92646 0.97049 1.19920 1.04253 1.03172 0.89595 1.25586 1.04345 1.00470 1.05880 1.83224 1.50512 1.25059 0.92901 1.24176 1.13552 1.04803 0.98054 1.17634 0.83271 0.78767 0.83235 1.90826 1.25286 1.66037 1.64604 1.47913 1.16900 1.36742 1.29892 1.22061 0.81559 1.03867 0.99485 1.22419 0.98397 0.91045 0.85994 1.24144 0.98715 0.99939 0.97213 1.21253 0.91366 0.95138 0.87760 1.42446 1.10936 1.68047 1.14741 1.19768 0.97042 1.27922 0.92506 0.89653 1.25672 0.95818 1.03111 1.02612 1.69862 1.03798 1.52801 1.35945 0.85013 0.77952 0.77206 0.79218 1.18346 1.22391 1.22169 1.23850 1.01989 0.94102 0.98762 0.90335 0.92360 0.91712 0.94062 0.90039 0.94523 0.91463 0.81393 0.78273 0.91133 0.88455 0.90015 0.91110 0.86755 0.93740 0.89845 0.79869 0.94095 0.93095 0.86229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 9.07 71.99 0.65 -1.20 16 2 C -0.05 -0.91 3.13 -11.54 -0.04 -0.95 16 3 C -0.14 -2.42 9.01 71.98 0.65 -1.77 16 4 C -0.04 -0.79 4.72 -20.42 -0.10 -0.89 16 5 C -0.14 -1.96 9.12 21.08 0.19 -1.76 16 6 C -0.23 -2.86 10.92 66.81 0.73 -2.13 16 7 S 0.21 4.01 23.08 -56.49 -1.30 2.70 16 8 C -0.29 -7.23 4.35 24.07 0.10 -7.12 16 9 C 0.58 19.69 6.40 86.42 0.55 20.25 16 10 O -0.59 -26.26 16.58 -4.35 -0.07 -26.33 16 11 N -0.58 -17.08 3.08 -824.46 -2.54 -19.62 16 12 C 0.07 1.34 8.91 127.77 1.14 2.48 16 13 C 0.13 4.43 4.10 45.52 0.19 4.62 16 14 C -0.16 -5.33 7.31 31.18 0.23 -5.10 16 15 C 0.16 5.99 4.57 45.58 0.21 6.20 16 16 N -0.72 -37.48 5.31 -320.16 -1.70 -39.18 16 17 C -0.24 -13.45 9.97 84.03 0.84 -12.61 16 18 H 0.09 4.46 7.83 -2.91 -0.02 4.43 16 19 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 20 N -0.97 -61.86 13.06 21.65 0.28 -61.58 16 21 Si 0.98 46.74 29.55 68.60 2.03 48.77 16 22 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 25 C -0.15 -4.84 7.34 31.12 0.23 -4.61 16 26 H 0.08 0.76 7.95 -2.39 -0.02 0.74 16 27 H 0.06 0.79 7.10 -2.39 -0.02 0.78 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.04 1.12 7.12 -2.39 -0.02 1.11 16 30 H 0.08 1.01 7.62 -2.39 -0.02 0.99 16 31 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.17 1.44 7.79 -2.91 -0.02 1.42 16 34 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 35 H 0.07 1.16 7.10 -2.39 -0.02 1.14 16 36 H 0.10 1.49 6.14 -2.39 -0.01 1.47 16 37 H 0.08 1.31 7.00 -2.39 -0.02 1.30 16 38 H 0.07 3.23 7.20 -2.39 -0.02 3.22 16 39 H 0.11 2.87 6.70 -2.39 -0.02 2.86 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.08 2.98 8.10 -2.38 -0.02 2.96 16 42 H 0.37 21.29 7.90 -92.71 -0.73 20.55 16 43 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.12 2.93 6.89 -2.39 -0.02 2.92 16 Total: -1.00 -76.81 375.91 3.00 -73.81 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.26 Total: 30.27 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: 6.04 Total: -8.83 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -3.96 Total: -120.38 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.07 Total: -26.33 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.77 kcal Atomic # 16 Polarization: 4.01 SS G_CDS: -1.30 Total: 2.70 kcal Total: -76.81 3.00 -73.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999875341.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.169 kcal (2) G-P(sol) polarization free energy of solvation -76.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds