Wall clock time and date at job start Tue Mar 31 2020 13:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47445 * 2 1 4 4 C 1.50700 * 109.46798 * 239.99375 * 2 1 3 5 5 O 1.21281 * 120.00506 * 241.80450 * 4 2 1 6 6 N 1.34782 * 119.99887 * 61.81462 * 4 2 1 7 7 C 1.46922 * 120.62867 * 354.50700 * 6 4 2 8 8 C 1.53198 * 108.77692 * 126.37067 * 7 6 4 9 9 C 1.53039 * 109.30921 * 54.63168 * 8 7 6 10 10 C 1.53032 * 109.54134 * 298.63527 * 9 8 7 11 11 H 1.09001 * 109.50100 * 301.38500 * 10 9 8 12 12 N 1.46499 * 109.49985 * 181.32104 * 10 9 8 13 13 C 1.36934 * 120.00053 * 84.99813 * 12 10 9 14 14 H 1.07998 * 120.00206 * 0.02562 * 13 12 10 15 15 C 1.38822 * 119.99832 * 180.02562 * 13 12 10 16 16 N 1.31615 * 119.99809 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99806 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47355 * 59.99777 * 17 15 13 19 19 H 1.48495 * 109.46712 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46913 * 299.99988 * 17 15 13 21 21 C 1.46930 * 120.63047 * 174.22631 * 6 4 2 22 22 C 1.50699 * 109.47025 * 120.00168 * 2 1 3 23 23 C 1.33394 * 125.20023 * 300.28777 * 22 2 1 24 24 C 1.38425 * 114.91992 * 180.21215 * 23 22 2 25 25 C 1.33392 * 114.92141 * 359.48610 * 24 23 22 26 26 S 1.75884 * 109.59305 * 0.27263 * 25 24 23 27 27 H 1.08994 * 109.46735 * 310.52880 * 1 2 3 28 28 H 1.09002 * 109.46703 * 70.52752 * 1 2 3 29 29 H 1.08998 * 109.46916 * 190.52874 * 1 2 3 30 30 H 1.09001 * 109.47407 * 164.34506 * 3 2 1 31 31 H 1.09009 * 109.46853 * 284.33975 * 3 2 1 32 32 H 1.08994 * 109.47248 * 44.33976 * 3 2 1 33 33 H 1.09001 * 109.58459 * 246.15514 * 7 6 4 34 34 H 1.08994 * 109.58880 * 6.57870 * 7 6 4 35 35 H 1.08996 * 109.49571 * 174.58620 * 8 7 6 36 36 H 1.08993 * 109.49575 * 294.65071 * 8 7 6 37 37 H 1.09005 * 109.46267 * 58.66134 * 9 8 7 38 38 H 1.09005 * 109.45827 * 178.61196 * 9 8 7 39 39 H 0.97006 * 119.99915 * 265.00025 * 12 10 9 40 40 H 0.97003 * 119.99789 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.58557 * 353.41975 * 21 6 4 42 42 H 1.08994 * 109.58172 * 113.84154 * 21 6 4 43 43 H 1.07998 * 122.54112 * 359.96666 * 23 22 2 44 44 H 1.07999 * 122.54006 * 179.76027 * 24 23 22 45 45 H 1.07994 * 125.20369 * 180.29952 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 -1.2304 5 8 2.7023 -1.7154 -1.1195 6 7 1.7371 -0.2292 -2.4542 7 6 0.8292 0.9154 -2.6094 8 6 1.5291 1.9900 -3.4474 9 6 1.9979 1.3759 -4.7685 10 6 3.0008 0.2553 -4.4847 11 1 3.8474 0.6571 -3.9278 12 7 3.4728 -0.3108 -5.7508 13 6 4.5161 0.2755 -6.4162 14 1 4.9914 1.1549 -6.0075 15 6 4.9630 -0.2607 -7.6162 16 7 4.3841 -1.3328 -8.1140 17 14 6.3868 0.5386 -8.5236 18 1 7.5924 0.5321 -7.6567 19 1 6.6679 -0.2195 -9.7691 20 1 6.0313 1.9391 -8.8666 21 6 2.3220 -0.8354 -3.6582 22 6 2.0324 -0.7104 1.2304 23 6 1.7704 -0.3494 2.4876 24 6 2.3456 -1.1528 3.4571 25 6 3.0659 -2.1725 2.9872 26 16 3.0473 -2.1470 1.2287 27 1 -0.3632 0.6678 0.7811 28 1 -0.3633 0.3426 -0.9689 29 1 -0.3633 -1.0104 0.1878 30 1 3.0942 1.4551 0.2773 31 1 1.9213 1.8698 -0.9957 32 1 1.4683 2.0300 0.7182 33 1 -0.0814 0.5936 -3.1148 34 1 0.5813 1.3208 -1.6285 35 1 0.8327 2.8034 -3.6511 36 1 2.3889 2.3757 -2.8997 37 1 1.1404 0.9687 -5.3042 38 1 2.4746 2.1443 -5.3772 39 1 3.0461 -1.1009 -6.1177 40 1 4.6961 -1.7072 -8.9527 41 1 3.0588 -1.5847 -3.3689 42 1 1.5356 -1.3028 -4.2506 43 1 1.1592 0.5071 2.7306 44 1 2.2171 -0.9706 4.5138 45 1 3.5813 -2.9024 3.5938 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999876968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:49 Heat of formation + Delta-G solvation = 27.384569 kcal Electronic energy + Delta-G solvation = -25822.787812 eV Core-core repulsion = 22353.926485 eV Total energy + Delta-G solvation = -3468.861328 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.90344 -38.10591 -37.39804 -35.50929 -34.21319 -32.22415 -31.30208 -28.94567 -27.95702 -27.64171 -25.94108 -24.33878 -23.92202 -22.29048 -22.04143 -20.33380 -19.14111 -18.77359 -17.27467 -17.05200 -16.64252 -15.56218 -15.43793 -15.22585 -14.74227 -14.43701 -14.29878 -13.92520 -13.72090 -13.57696 -13.42068 -13.00643 -12.84239 -12.64962 -12.46179 -12.45288 -12.28193 -12.17239 -11.80469 -11.47240 -11.28750 -11.01855 -10.94239 -10.92048 -10.76641 -10.54837 -10.41566 -10.27902 -10.07965 -9.72802 -9.27346 -8.94328 -8.60776 -8.53435 -8.18488 -7.02810 -5.80567 -3.10527 1.11481 1.86858 2.32859 2.54296 2.81187 3.04306 3.42082 3.46843 3.47619 4.21657 4.35719 4.55753 4.76876 4.79153 4.85822 5.02147 5.13918 5.18153 5.28776 5.38573 5.43437 5.44735 5.48482 5.53225 5.57697 5.60904 5.66450 5.70775 5.76005 5.86203 5.89336 6.03287 6.09326 6.15895 6.18525 6.33481 6.36792 6.48242 6.55656 6.61305 6.81847 6.98988 7.43499 7.65795 8.09897 8.37215 9.48438 10.03078 10.38070 11.41771 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020002 B = 0.003212 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.516546 B = 8714.219104 C = 9458.403041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.008 4.008 3 C -0.153 4.153 4 C 0.520 3.480 5 O -0.523 6.523 6 N -0.594 5.594 7 C 0.083 3.917 8 C -0.136 4.136 9 C -0.137 4.137 10 C 0.169 3.831 11 H 0.049 0.951 12 N -0.720 5.720 13 C -0.241 4.241 14 H 0.070 0.930 15 C -0.011 4.011 16 N -0.931 5.931 17 Si 0.908 3.092 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.286 1.286 21 C 0.105 3.895 22 C -0.186 4.186 23 C -0.137 4.137 24 C -0.147 4.147 25 C -0.277 4.277 26 S 0.233 5.767 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.385 0.615 40 H 0.257 0.743 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.131 0.869 44 H 0.125 0.875 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.618 5.136 20.595 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 C -0.210 4.210 4 C 0.307 3.693 5 O -0.402 6.402 6 N -0.325 5.325 7 C -0.039 4.039 8 C -0.175 4.175 9 C -0.178 4.178 10 C 0.058 3.942 11 H 0.067 0.933 12 N -0.361 5.361 13 C -0.372 4.372 14 H 0.088 0.912 15 C -0.207 4.207 16 N -0.579 5.579 17 Si 0.738 3.262 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.213 1.213 21 C -0.017 4.017 22 C -0.304 4.304 23 C -0.169 4.169 24 C -0.178 4.178 25 C -0.412 4.412 26 S 0.499 5.501 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.121 0.879 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.218 0.782 40 H 0.066 0.934 41 H 0.112 0.888 42 H 0.085 0.915 43 H 0.148 0.852 44 H 0.143 0.857 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.433 3.727 19.434 21.921 hybrid contribution -0.033 1.142 0.492 1.244 sum -9.466 4.869 19.926 22.591 Atomic orbital electron populations 1.22296 0.91336 1.03607 1.03732 1.19143 0.97182 0.95830 0.89146 1.22271 1.02507 0.92347 1.03910 1.20435 0.79845 0.84420 0.84581 1.90417 1.40452 1.25462 1.83840 1.47939 1.46226 1.32507 1.05811 1.22441 0.92723 0.86928 1.01805 1.22000 1.00408 0.97283 0.97805 1.22288 1.00213 1.00118 0.95182 1.20377 0.94185 0.91482 0.88187 0.93254 1.42292 1.39181 1.33732 1.20934 1.19150 1.07812 1.08372 1.01887 0.91208 1.24750 0.99822 0.97938 0.98187 1.69648 1.43634 1.23248 1.21398 0.86264 0.82336 0.78399 0.79151 1.21192 1.21651 1.21250 1.21978 0.98284 0.97076 0.84363 1.24210 1.06789 1.02617 0.96812 1.19823 1.03825 1.02158 0.91050 1.19939 1.01188 0.96636 1.00020 1.26692 1.06509 1.03746 1.04293 1.85682 1.46096 1.23064 0.95275 0.90929 0.90104 0.91612 0.91498 0.89929 0.90991 0.91054 0.87930 0.91127 0.91650 0.92416 0.91475 0.78168 0.93364 0.88814 0.91526 0.85167 0.85695 0.83067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 7.88 37.16 0.29 -1.01 16 2 C -0.01 -0.09 0.64 -156.81 -0.10 -0.19 16 3 C -0.15 -1.42 7.90 37.15 0.29 -1.13 16 4 C 0.52 7.56 6.48 -10.98 -0.07 7.49 16 5 O -0.52 -9.27 12.29 5.56 0.07 -9.20 16 6 N -0.59 -8.24 2.96 -173.03 -0.51 -8.75 16 7 C 0.08 0.87 3.91 -3.71 -0.01 0.86 16 8 C -0.14 -1.57 5.76 -26.61 -0.15 -1.73 16 9 C -0.14 -2.22 5.47 -26.69 -0.15 -2.37 16 10 C 0.17 3.24 2.91 -68.04 -0.20 3.04 16 11 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 12 N -0.72 -17.62 5.12 -53.53 -0.27 -17.89 16 13 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 14 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 15 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 16 N -0.93 -27.83 13.06 55.49 0.72 -27.11 16 17 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 18 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 C 0.11 1.81 5.86 -3.93 -0.02 1.78 16 22 C -0.19 -2.29 5.03 -36.00 -0.18 -2.47 16 23 C -0.14 -1.48 9.57 -41.21 -0.39 -1.88 16 24 C -0.15 -1.60 10.18 -41.21 -0.42 -2.02 16 25 C -0.28 -3.22 11.23 29.04 0.33 -2.90 16 26 S 0.23 3.23 19.58 -107.50 -2.11 1.12 16 27 H 0.07 0.48 7.94 -51.93 -0.41 0.06 16 28 H 0.08 0.61 4.71 -51.93 -0.24 0.37 16 29 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 30 H 0.07 0.71 8.04 -51.93 -0.42 0.29 16 31 H 0.08 0.74 3.90 -51.92 -0.20 0.53 16 32 H 0.07 0.50 7.90 -51.93 -0.41 0.09 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.83 2.93 -51.93 -0.15 0.67 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.77 7.28 -51.93 -0.38 0.39 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.38 10.00 7.80 -40.82 -0.32 9.68 16 40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.09 1.82 7.04 -51.93 -0.37 1.46 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 44 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 45 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -31.37 356.87 -9.45 -40.82 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -6.67 Total: 8.09 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -1.03 Total: -9.64 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.06 Total: -53.75 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.07 Total: -9.20 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -2.11 Total: 1.12 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.37 -9.45 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999876968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.200 kcal (2) G-P(sol) polarization free energy of solvation -31.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds