Wall clock time and date at job start Tue Mar 31 2020 13:25:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.47445 * 2 1 4 4 C 1.50700 * 109.46798 * 239.99375 * 2 1 3 5 5 O 1.21281 * 120.00506 * 241.80450 * 4 2 1 6 6 N 1.34782 * 119.99887 * 61.81462 * 4 2 1 7 7 C 1.46922 * 120.62867 * 354.50700 * 6 4 2 8 8 C 1.53198 * 108.77692 * 126.37067 * 7 6 4 9 9 C 1.53039 * 109.30921 * 54.63168 * 8 7 6 10 10 C 1.53032 * 109.54134 * 298.63527 * 9 8 7 11 11 H 1.09001 * 109.50100 * 301.38500 * 10 9 8 12 12 N 1.46499 * 109.49985 * 181.32104 * 10 9 8 13 13 C 1.36934 * 120.00053 * 84.99813 * 12 10 9 14 14 H 1.07998 * 120.00206 * 0.02562 * 13 12 10 15 15 C 1.38822 * 119.99832 * 180.02562 * 13 12 10 16 16 N 1.31615 * 119.99809 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99806 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47355 * 59.99777 * 17 15 13 19 19 H 1.48495 * 109.46712 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46913 * 299.99988 * 17 15 13 21 21 C 1.46930 * 120.63047 * 174.22631 * 6 4 2 22 22 C 1.50699 * 109.47025 * 120.00168 * 2 1 3 23 23 C 1.33394 * 125.20023 * 300.28777 * 22 2 1 24 24 C 1.38425 * 114.91992 * 180.21215 * 23 22 2 25 25 C 1.33392 * 114.92141 * 359.48610 * 24 23 22 26 26 S 1.75884 * 109.59305 * 0.27263 * 25 24 23 27 27 H 1.08994 * 109.46735 * 310.52880 * 1 2 3 28 28 H 1.09002 * 109.46703 * 70.52752 * 1 2 3 29 29 H 1.08998 * 109.46916 * 190.52874 * 1 2 3 30 30 H 1.09001 * 109.47407 * 164.34506 * 3 2 1 31 31 H 1.09009 * 109.46853 * 284.33975 * 3 2 1 32 32 H 1.08994 * 109.47248 * 44.33976 * 3 2 1 33 33 H 1.09001 * 109.58459 * 246.15514 * 7 6 4 34 34 H 1.08994 * 109.58880 * 6.57870 * 7 6 4 35 35 H 1.08996 * 109.49571 * 174.58620 * 8 7 6 36 36 H 1.08993 * 109.49575 * 294.65071 * 8 7 6 37 37 H 1.09005 * 109.46267 * 58.66134 * 9 8 7 38 38 H 1.09005 * 109.45827 * 178.61196 * 9 8 7 39 39 H 0.97006 * 119.99915 * 265.00025 * 12 10 9 40 40 H 0.97003 * 119.99789 * 179.97438 * 16 15 13 41 41 H 1.09002 * 109.58557 * 353.41975 * 21 6 4 42 42 H 1.08994 * 109.58172 * 113.84154 * 21 6 4 43 43 H 1.07998 * 122.54112 * 359.96666 * 23 22 2 44 44 H 1.07999 * 122.54006 * 179.76027 * 24 23 22 45 45 H 1.07994 * 125.20369 * 180.29952 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 -1.2304 5 8 2.7023 -1.7154 -1.1195 6 7 1.7371 -0.2292 -2.4542 7 6 0.8292 0.9154 -2.6094 8 6 1.5291 1.9900 -3.4474 9 6 1.9979 1.3759 -4.7685 10 6 3.0008 0.2553 -4.4847 11 1 3.8474 0.6571 -3.9278 12 7 3.4728 -0.3108 -5.7508 13 6 4.5161 0.2755 -6.4162 14 1 4.9914 1.1549 -6.0075 15 6 4.9630 -0.2607 -7.6162 16 7 4.3841 -1.3328 -8.1140 17 14 6.3868 0.5386 -8.5236 18 1 7.5924 0.5321 -7.6567 19 1 6.6679 -0.2195 -9.7691 20 1 6.0313 1.9391 -8.8666 21 6 2.3220 -0.8354 -3.6582 22 6 2.0324 -0.7104 1.2304 23 6 1.7704 -0.3494 2.4876 24 6 2.3456 -1.1528 3.4571 25 6 3.0659 -2.1725 2.9872 26 16 3.0473 -2.1470 1.2287 27 1 -0.3632 0.6678 0.7811 28 1 -0.3633 0.3426 -0.9689 29 1 -0.3633 -1.0104 0.1878 30 1 3.0942 1.4551 0.2773 31 1 1.9213 1.8698 -0.9957 32 1 1.4683 2.0300 0.7182 33 1 -0.0814 0.5936 -3.1148 34 1 0.5813 1.3208 -1.6285 35 1 0.8327 2.8034 -3.6511 36 1 2.3889 2.3757 -2.8997 37 1 1.1404 0.9687 -5.3042 38 1 2.4746 2.1443 -5.3772 39 1 3.0461 -1.1009 -6.1177 40 1 4.6961 -1.7072 -8.9527 41 1 3.0588 -1.5847 -3.3689 42 1 1.5356 -1.3028 -4.2506 43 1 1.1592 0.5071 2.7306 44 1 2.2171 -0.9706 4.5138 45 1 3.5813 -2.9024 3.5938 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999876968.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:25:48 Heat of formation + Delta-G solvation = 8.269017 kcal Electronic energy + Delta-G solvation = -25823.616725 eV Core-core repulsion = 22353.926485 eV Total energy + Delta-G solvation = -3469.690240 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.96523 -39.17702 -38.54412 -36.69515 -35.66602 -33.72527 -32.80478 -30.35314 -29.12688 -28.30888 -27.04638 -25.84166 -25.22862 -23.42398 -23.22885 -21.59555 -20.37518 -19.62469 -19.18913 -18.10391 -17.74274 -16.85071 -16.55477 -16.30234 -16.14592 -15.76257 -15.45215 -15.27195 -14.92861 -14.79827 -14.65611 -14.45238 -13.76541 -13.70010 -13.57621 -13.27961 -13.24654 -13.01893 -12.91832 -12.84881 -12.69127 -12.32681 -12.22678 -12.19736 -12.16593 -11.96117 -11.85802 -11.72184 -11.67959 -11.12832 -10.91088 -10.33033 -9.76972 -9.44729 -9.22004 -9.04756 -7.97142 -5.26784 0.23281 0.93759 1.37541 1.45356 1.47622 1.48483 1.54397 1.95696 1.97606 2.54890 3.29223 3.36216 3.52481 3.77559 3.96785 3.99539 4.05122 4.06749 4.11691 4.24062 4.34158 4.34790 4.53648 4.63941 4.65067 4.72728 4.77893 4.79642 4.83079 4.85424 4.86588 4.96038 5.05495 5.16424 5.20975 5.29464 5.31844 5.39667 5.42060 5.48541 5.50658 5.59317 5.74605 6.24260 6.34759 7.00368 7.30250 8.03166 8.27144 9.25998 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.020002 B = 0.003212 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.516546 B = 8714.219104 C = 9458.403041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.001 4.001 3 C -0.151 4.151 4 C 0.508 3.492 5 O -0.563 6.563 6 N -0.593 5.593 7 C 0.079 3.921 8 C -0.127 4.127 9 C -0.128 4.128 10 C 0.168 3.832 11 H 0.030 0.970 12 N -0.735 5.735 13 C -0.241 4.241 14 H 0.073 0.927 15 C -0.073 4.073 16 N -0.969 5.969 17 Si 0.972 3.028 18 H -0.281 1.281 19 H -0.295 1.295 20 H -0.274 1.274 21 C 0.120 3.880 22 C -0.190 4.190 23 C -0.128 4.128 24 C -0.146 4.146 25 C -0.276 4.276 26 S 0.139 5.861 27 H 0.105 0.895 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.138 0.862 35 H 0.107 0.893 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.046 0.954 39 H 0.373 0.627 40 H 0.252 0.748 41 H 0.059 0.941 42 H 0.068 0.932 43 H 0.165 0.835 44 H 0.153 0.847 45 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.716 8.304 23.061 27.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.006 4.006 3 C -0.208 4.208 4 C 0.297 3.703 5 O -0.444 6.444 6 N -0.323 5.323 7 C -0.041 4.041 8 C -0.165 4.165 9 C -0.168 4.168 10 C 0.059 3.941 11 H 0.049 0.951 12 N -0.376 5.376 13 C -0.372 4.372 14 H 0.091 0.909 15 C -0.266 4.266 16 N -0.619 5.619 17 Si 0.801 3.199 18 H -0.207 1.207 19 H -0.221 1.221 20 H -0.200 1.200 21 C -0.004 4.004 22 C -0.308 4.308 23 C -0.158 4.158 24 C -0.176 4.176 25 C -0.411 4.411 26 S 0.404 5.596 27 H 0.123 0.877 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.126 0.874 33 H 0.106 0.894 34 H 0.155 0.845 35 H 0.126 0.874 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.205 0.795 40 H 0.060 0.940 41 H 0.078 0.922 42 H 0.086 0.914 43 H 0.183 0.817 44 H 0.171 0.829 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -11.563 6.955 21.955 25.770 hybrid contribution 0.612 0.142 -0.131 0.641 sum -10.951 7.096 21.824 25.428 Atomic orbital electron populations 1.22357 0.88834 1.03840 1.05703 1.19238 0.98898 0.96064 0.86403 1.22325 1.01998 0.91218 1.05294 1.21301 0.79213 0.84183 0.85640 1.90440 1.41998 1.27354 1.84651 1.47986 1.46478 1.33358 1.04521 1.22792 0.92214 0.85302 1.03775 1.21969 1.01410 0.98253 0.94890 1.22070 0.98794 0.98135 0.97819 1.20535 0.94544 0.92907 0.86120 0.95139 1.42482 1.38971 1.33607 1.22508 1.19506 1.07902 1.08003 1.01826 0.90858 1.25556 1.02722 0.98875 0.99425 1.69808 1.45418 1.24959 1.21712 0.85231 0.79320 0.77800 0.77539 1.20738 1.22129 1.20004 1.21500 0.97542 0.95796 0.85612 1.24362 1.06742 1.01641 0.98097 1.20195 1.03051 1.02552 0.90033 1.20357 0.99969 0.95769 1.01544 1.26765 1.07282 1.04813 1.02271 1.86045 1.48846 1.26278 0.98418 0.87651 0.88784 0.92924 0.93294 0.89387 0.87380 0.89357 0.84469 0.87436 0.91518 0.92527 0.93495 0.79530 0.93964 0.92202 0.91414 0.81714 0.82897 0.81712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 7.88 71.98 0.57 -1.38 16 2 C 0.00 -0.02 0.64 -53.67 -0.03 -0.05 16 3 C -0.15 -2.24 7.90 71.98 0.57 -1.67 16 4 C 0.51 14.71 6.48 87.66 0.57 15.28 16 5 O -0.56 -21.17 12.29 -3.03 -0.04 -21.21 16 6 N -0.59 -16.06 2.96 -819.73 -2.42 -18.48 16 7 C 0.08 1.39 3.91 86.37 0.34 1.73 16 8 C -0.13 -2.52 5.76 30.67 0.18 -2.35 16 9 C -0.13 -4.04 5.47 30.62 0.17 -3.87 16 10 C 0.17 6.65 2.91 44.92 0.13 6.78 16 11 H 0.03 1.31 8.08 -2.39 -0.02 1.29 16 12 N -0.74 -37.47 5.12 -323.26 -1.66 -39.13 16 13 C -0.24 -13.48 9.93 84.04 0.83 -12.64 16 14 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 15 C -0.07 -4.25 5.50 84.87 0.47 -3.78 16 16 N -0.97 -59.81 13.06 21.65 0.28 -59.52 16 17 Si 0.97 46.49 29.55 68.60 2.03 48.52 16 18 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 19 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 20 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 21 C 0.12 4.27 5.86 86.22 0.51 4.77 16 22 C -0.19 -4.39 5.03 24.59 0.12 -4.27 16 23 C -0.13 -2.31 9.57 21.22 0.20 -2.11 16 24 C -0.15 -2.77 10.18 21.22 0.22 -2.55 16 25 C -0.28 -6.22 11.23 66.72 0.75 -5.47 16 26 S 0.14 4.02 19.58 -56.49 -1.11 2.91 16 27 H 0.10 0.72 7.94 -2.39 -0.02 0.70 16 28 H 0.09 0.97 4.71 -2.39 -0.01 0.95 16 29 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 30 H 0.05 0.92 8.04 -2.39 -0.02 0.90 16 31 H 0.09 1.20 3.90 -2.38 -0.01 1.19 16 32 H 0.11 0.85 7.90 -2.39 -0.02 0.83 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.14 1.51 2.93 -2.39 -0.01 1.51 16 35 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.07 1.36 7.28 -2.39 -0.02 1.34 16 37 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 39 H 0.37 20.41 7.80 -92.70 -0.72 19.69 16 40 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.06 2.53 7.04 -2.39 -0.02 2.51 16 42 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 43 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 44 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 45 H 0.17 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -73.60 356.87 2.95 -70.66 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.28 Total: 27.83 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 5.58 Total: -11.58 kcal Atomic # 7 Polarization: -113.34 SS G_CDS: -3.80 Total: -117.13 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.04 Total: -21.21 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.11 Total: 2.91 kcal Total: -73.60 2.95 -70.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999876968.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.929 kcal (2) G-P(sol) polarization free energy of solvation -73.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.660 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds