Wall clock time and date at job start Tue Mar 31 2020 13:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50709 * 109.46792 * 2 1 4 4 S 1.70616 * 124.52191 * 269.97482 * 3 2 1 5 5 C 1.75827 * 91.56328 * 180.02562 * 4 3 2 6 6 C 1.46585 * 125.45786 * 179.97438 * 5 4 3 7 7 O 1.21705 * 120.00025 * 225.08523 * 6 5 4 8 8 N 1.34772 * 120.00064 * 45.09068 * 6 5 4 9 9 C 1.46932 * 120.63071 * 356.40743 * 8 6 5 10 10 C 1.53188 * 108.77571 * 126.41281 * 9 8 6 11 11 C 1.53039 * 109.31528 * 54.63818 * 10 9 8 12 12 C 1.53038 * 109.53416 * 298.63460 * 11 10 9 13 13 H 1.09000 * 109.50260 * 301.41072 * 12 11 10 14 14 N 1.46503 * 109.49799 * 181.31314 * 12 11 10 15 15 C 1.36933 * 120.00176 * 154.99294 * 14 12 11 16 16 H 1.08004 * 120.00294 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00347 * 180.02562 * 15 14 12 18 18 N 1.31617 * 119.99674 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00377 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46710 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47406 * 120.00097 * 19 17 15 22 22 H 1.48499 * 109.46928 * 240.00329 * 19 17 15 23 23 C 1.46920 * 120.63661 * 176.42811 * 8 6 5 24 24 C 1.36646 * 109.08567 * 0.24532 * 5 4 3 25 25 C 1.33817 * 124.52222 * 89.99776 * 3 2 1 26 26 C 1.50692 * 122.44796 * 359.95994 * 25 3 2 27 27 H 1.09003 * 109.47531 * 59.99899 * 1 2 3 28 28 H 1.09000 * 109.47061 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47368 * 300.00083 * 1 2 3 30 30 H 1.08992 * 109.47274 * 240.00446 * 2 1 3 31 31 H 1.08998 * 109.47340 * 119.99395 * 2 1 3 32 32 H 1.09001 * 109.58378 * 6.62643 * 9 8 6 33 33 H 1.08997 * 109.58339 * 246.20509 * 9 8 6 34 34 H 1.09001 * 109.49849 * 294.68176 * 10 9 8 35 35 H 1.09004 * 109.49627 * 174.58718 * 10 9 8 36 36 H 1.08999 * 109.45945 * 178.61263 * 11 10 9 37 37 H 1.09000 * 109.44471 * 58.64210 * 11 10 9 38 38 H 0.97000 * 120.00133 * 335.00304 * 14 12 11 39 39 H 0.96997 * 119.99996 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.58951 * 113.79703 * 23 8 6 41 41 H 1.09004 * 109.58521 * 353.37488 * 23 8 6 42 42 H 1.08002 * 123.35902 * 179.75824 * 24 5 4 43 43 H 1.09002 * 109.47849 * 90.00027 * 26 25 3 44 44 H 1.09001 * 109.47219 * 209.99805 * 26 25 3 45 45 H 1.08996 * 109.47680 * 329.99663 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 16 2.3551 2.3324 -1.4057 5 6 2.8471 3.7232 -0.4492 6 6 3.3024 5.0080 -0.9884 7 8 4.2861 5.5503 -0.5198 8 7 2.6318 5.5887 -2.0030 9 6 1.4900 4.9100 -2.6311 10 6 0.2836 5.8538 -2.6112 11 6 0.6674 7.1800 -3.2716 12 6 1.8050 7.8336 -2.4838 13 1 1.4877 7.9964 -1.4538 14 7 2.1506 9.1178 -3.0984 15 6 2.7346 10.1017 -2.3462 16 1 2.9409 9.9310 -1.2999 17 6 3.0616 11.3187 -2.9284 18 7 2.8098 11.5270 -4.2034 19 14 3.8589 12.6607 -1.9024 20 1 4.0339 12.1799 -0.5084 21 1 5.1841 13.0029 -2.4786 22 1 2.9920 13.8664 -1.9046 23 6 3.0287 6.9122 -2.5023 24 6 2.7428 3.4126 0.8774 25 6 2.2849 2.1360 1.1025 26 6 2.0876 1.5805 2.4894 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.2534 4.0027 -2.0753 33 1 1.7380 4.6556 -3.6616 34 1 -0.0195 6.0352 -1.5800 35 1 -0.5423 5.4001 -3.1592 36 1 -0.1966 7.8445 -3.2808 37 1 0.9940 6.9946 -4.2949 38 1 1.9656 9.2711 -4.0382 39 1 3.0379 12.3775 -4.6101 40 1 3.4021 6.8211 -3.5222 41 1 3.8074 7.3260 -1.8615 42 1 2.9920 4.1023 1.6703 43 1 3.0086 1.1034 2.8243 44 1 1.8289 2.3902 3.1717 45 1 1.2824 0.8460 2.4755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000874568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:49 Heat of formation + Delta-G solvation = -3.486153 kcal Electronic energy + Delta-G solvation = -25041.421579 eV Core-core repulsion = 21571.221597 eV Total energy + Delta-G solvation = -3470.199983 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.02585 -38.74158 -37.20396 -34.52895 -34.01877 -32.31452 -31.24120 -30.56108 -28.47918 -27.58853 -25.83449 -24.19757 -23.68249 -22.57248 -21.91729 -20.46050 -19.37197 -18.37507 -17.92016 -17.08743 -16.39590 -16.00841 -15.21381 -14.92291 -14.54710 -14.46995 -14.26806 -14.21387 -13.89888 -13.50835 -13.41880 -13.21060 -12.90785 -12.77910 -12.55705 -12.43246 -12.37963 -12.25577 -11.86893 -11.59538 -11.45135 -11.36653 -11.08800 -10.91659 -10.85075 -10.63440 -10.56371 -10.17469 -9.86502 -9.82913 -9.63871 -9.09174 -8.78011 -8.41140 -8.33596 -7.00391 -5.78800 -3.08602 0.49276 1.25342 1.73351 2.30337 2.99920 3.31952 3.44906 3.51335 3.53779 4.37589 4.53543 4.58869 4.65578 4.89515 4.90179 4.96693 5.07320 5.08676 5.16298 5.25885 5.37820 5.43658 5.47000 5.47842 5.53512 5.58072 5.60868 5.66199 5.77349 5.80819 5.83284 5.92139 6.03133 6.14453 6.16663 6.20824 6.30239 6.34682 6.47856 6.71138 6.81692 6.99392 7.59049 7.72487 8.29958 8.39572 9.51356 10.04937 10.40413 11.43524 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023291 B = 0.002948 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.899063 B = 9497.250029 C =10148.697064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.052 4.052 3 C -0.216 4.216 4 S 0.208 5.792 5 C -0.249 4.249 6 C 0.583 3.417 7 O -0.528 6.528 8 N -0.598 5.598 9 C 0.094 3.906 10 C -0.127 4.127 11 C -0.126 4.126 12 C 0.169 3.831 13 H 0.051 0.949 14 N -0.718 5.718 15 C -0.242 4.242 16 H 0.072 0.928 17 C -0.011 4.011 18 N -0.932 5.932 19 Si 0.907 3.093 20 H -0.279 1.279 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.093 3.907 24 C -0.064 4.064 25 C -0.114 4.114 26 C -0.093 4.093 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.386 0.614 39 H 0.255 0.745 40 H 0.064 0.936 41 H 0.092 0.908 42 H 0.148 0.852 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.033 -26.319 6.873 28.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 C -0.335 4.335 4 S 0.478 5.522 5 C -0.369 4.369 6 C 0.369 3.631 7 O -0.406 6.406 8 N -0.331 5.331 9 C -0.030 4.030 10 C -0.166 4.166 11 C -0.165 4.165 12 C 0.057 3.943 13 H 0.069 0.931 14 N -0.358 5.358 15 C -0.373 4.373 16 H 0.090 0.910 17 C -0.207 4.207 18 N -0.580 5.580 19 Si 0.738 3.262 20 H -0.204 1.204 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.031 4.031 24 C -0.097 4.097 25 C -0.127 4.127 26 C -0.152 4.152 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.220 0.780 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.110 0.890 42 H 0.166 0.834 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.527 -26.166 5.656 27.555 hybrid contribution 0.550 1.144 1.660 2.089 sum -5.977 -25.022 7.316 26.746 Atomic orbital electron populations 1.21793 0.94176 1.01988 1.02663 1.20088 0.96259 0.89552 1.03233 1.24129 1.09169 1.02167 0.97985 1.83081 1.60224 1.01578 1.07288 1.24554 1.14557 0.99720 0.98056 1.17076 0.83112 0.83119 0.79842 1.90847 1.25639 1.64359 1.59730 1.48179 1.30997 1.20136 1.33746 1.22114 0.86619 0.95838 0.98439 1.21853 0.96667 0.96208 1.01849 1.21834 0.99661 0.95455 0.99514 1.20489 0.90991 0.86175 0.96614 0.93063 1.42380 1.72933 1.09539 1.10956 1.19320 1.31925 0.92649 0.93400 0.90983 1.24749 1.01795 0.98085 0.96072 1.69669 1.53274 1.24581 1.10482 0.86117 0.78750 0.81980 0.79399 1.20409 1.21772 1.21842 1.22857 1.01101 0.79755 0.99351 1.20514 0.98192 0.96027 0.94943 1.18600 1.03875 0.93833 0.96409 1.20508 1.01966 1.00990 0.91750 0.92320 0.92023 0.92174 0.90844 0.90000 0.89917 0.91032 0.91526 0.90852 0.91268 0.91951 0.78034 0.93506 0.91787 0.88983 0.83434 0.91303 0.91384 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.89 37.15 0.37 -0.48 16 2 C -0.05 -0.34 5.72 -27.88 -0.16 -0.50 16 3 C -0.22 -2.00 5.53 -35.86 -0.20 -2.19 16 4 S 0.21 2.14 19.84 -107.50 -2.13 0.01 16 5 C -0.25 -3.44 5.49 -36.79 -0.20 -3.65 16 6 C 0.58 10.18 7.54 -12.90 -0.10 10.08 16 7 O -0.53 -11.34 16.51 5.18 0.09 -11.25 16 8 N -0.60 -9.79 2.97 -174.35 -0.52 -10.30 16 9 C 0.09 1.18 5.88 -3.71 -0.02 1.15 16 10 C -0.13 -1.58 6.08 -26.61 -0.16 -1.74 16 11 C -0.13 -2.00 5.35 -26.69 -0.14 -2.14 16 12 C 0.17 3.38 2.92 -67.81 -0.20 3.19 16 13 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 14 N -0.72 -17.91 5.12 -53.31 -0.27 -18.18 16 15 C -0.24 -6.79 9.93 -15.06 -0.15 -6.94 16 16 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 17 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 18 N -0.93 -28.12 13.06 55.49 0.72 -27.39 16 19 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 C 0.09 1.82 6.01 -3.72 -0.02 1.79 16 24 C -0.06 -0.81 10.02 -40.43 -0.41 -1.21 16 25 C -0.11 -1.16 5.78 -106.45 -0.62 -1.77 16 26 C -0.09 -0.69 9.55 36.00 0.34 -0.34 16 27 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.36 7.80 -51.93 -0.41 -0.04 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.46 7.25 -51.93 -0.38 0.09 16 32 H 0.08 0.91 4.00 -30.16 -0.12 0.79 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.39 10.08 7.80 -40.82 -0.32 9.76 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.09 2.08 7.02 -51.93 -0.36 1.72 16 42 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 43 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.48 8.13 -51.93 -0.42 0.05 16 45 H 0.07 0.40 6.86 -51.93 -0.36 0.05 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -32.75 372.14 -10.27 -43.01 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -6.98 Total: 5.86 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -1.76 Total: -5.16 kcal Atomic # 7 Polarization: -55.81 SS G_CDS: -0.07 Total: -55.88 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.25 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Atomic # 16 Polarization: 2.14 SS G_CDS: -2.13 Total: 0.01 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.75 -10.27 -43.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000874568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.526 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds