Wall clock time and date at job start Tue Mar 31 2020 13:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50709 * 109.46792 * 2 1 4 4 S 1.70616 * 124.52191 * 269.97482 * 3 2 1 5 5 C 1.75827 * 91.56328 * 180.02562 * 4 3 2 6 6 C 1.46585 * 125.45786 * 179.97438 * 5 4 3 7 7 O 1.21705 * 120.00025 * 225.08523 * 6 5 4 8 8 N 1.34772 * 120.00064 * 45.09068 * 6 5 4 9 9 C 1.46932 * 120.63071 * 356.40743 * 8 6 5 10 10 C 1.53188 * 108.77571 * 126.41281 * 9 8 6 11 11 C 1.53039 * 109.31528 * 54.63818 * 10 9 8 12 12 C 1.53038 * 109.53416 * 298.63460 * 11 10 9 13 13 H 1.09000 * 109.50260 * 301.41072 * 12 11 10 14 14 N 1.46503 * 109.49799 * 181.31314 * 12 11 10 15 15 C 1.36933 * 120.00176 * 154.99294 * 14 12 11 16 16 H 1.08004 * 120.00294 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00347 * 180.02562 * 15 14 12 18 18 N 1.31617 * 119.99674 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00377 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46710 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47406 * 120.00097 * 19 17 15 22 22 H 1.48499 * 109.46928 * 240.00329 * 19 17 15 23 23 C 1.46920 * 120.63661 * 176.42811 * 8 6 5 24 24 C 1.36646 * 109.08567 * 0.24532 * 5 4 3 25 25 C 1.33817 * 124.52222 * 89.99776 * 3 2 1 26 26 C 1.50692 * 122.44796 * 359.95994 * 25 3 2 27 27 H 1.09003 * 109.47531 * 59.99899 * 1 2 3 28 28 H 1.09000 * 109.47061 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47368 * 300.00083 * 1 2 3 30 30 H 1.08992 * 109.47274 * 240.00446 * 2 1 3 31 31 H 1.08998 * 109.47340 * 119.99395 * 2 1 3 32 32 H 1.09001 * 109.58378 * 6.62643 * 9 8 6 33 33 H 1.08997 * 109.58339 * 246.20509 * 9 8 6 34 34 H 1.09001 * 109.49849 * 294.68176 * 10 9 8 35 35 H 1.09004 * 109.49627 * 174.58718 * 10 9 8 36 36 H 1.08999 * 109.45945 * 178.61263 * 11 10 9 37 37 H 1.09000 * 109.44471 * 58.64210 * 11 10 9 38 38 H 0.97000 * 120.00133 * 335.00304 * 14 12 11 39 39 H 0.96997 * 119.99996 * 179.97438 * 18 17 15 40 40 H 1.08997 * 109.58951 * 113.79703 * 23 8 6 41 41 H 1.09004 * 109.58521 * 353.37488 * 23 8 6 42 42 H 1.08002 * 123.35902 * 179.75824 * 24 5 4 43 43 H 1.09002 * 109.47849 * 90.00027 * 26 25 3 44 44 H 1.09001 * 109.47219 * 209.99805 * 26 25 3 45 45 H 1.08996 * 109.47680 * 329.99663 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 16 2.3551 2.3324 -1.4057 5 6 2.8471 3.7232 -0.4492 6 6 3.3024 5.0080 -0.9884 7 8 4.2861 5.5503 -0.5198 8 7 2.6318 5.5887 -2.0030 9 6 1.4900 4.9100 -2.6311 10 6 0.2836 5.8538 -2.6112 11 6 0.6674 7.1800 -3.2716 12 6 1.8050 7.8336 -2.4838 13 1 1.4877 7.9964 -1.4538 14 7 2.1506 9.1178 -3.0984 15 6 2.7346 10.1017 -2.3462 16 1 2.9409 9.9310 -1.2999 17 6 3.0616 11.3187 -2.9284 18 7 2.8098 11.5270 -4.2034 19 14 3.8589 12.6607 -1.9024 20 1 4.0339 12.1799 -0.5084 21 1 5.1841 13.0029 -2.4786 22 1 2.9920 13.8664 -1.9046 23 6 3.0287 6.9122 -2.5023 24 6 2.7428 3.4126 0.8774 25 6 2.2849 2.1360 1.1025 26 6 2.0876 1.5805 2.4894 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.2534 4.0027 -2.0753 33 1 1.7380 4.6556 -3.6616 34 1 -0.0195 6.0352 -1.5800 35 1 -0.5423 5.4001 -3.1592 36 1 -0.1966 7.8445 -3.2808 37 1 0.9940 6.9946 -4.2949 38 1 1.9656 9.2711 -4.0382 39 1 3.0379 12.3775 -4.6101 40 1 3.4021 6.8211 -3.5222 41 1 3.8074 7.3260 -1.8615 42 1 2.9920 4.1023 1.6703 43 1 3.0086 1.1034 2.8243 44 1 1.8289 2.3902 3.1717 45 1 1.2824 0.8460 2.4755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000874568.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:48 Heat of formation + Delta-G solvation = -23.248364 kcal Electronic energy + Delta-G solvation = -25042.278533 eV Core-core repulsion = 21571.221597 eV Total energy + Delta-G solvation = -3471.056936 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.34345 -39.63833 -38.62858 -36.28895 -34.75238 -33.93786 -32.81700 -31.45142 -30.07692 -28.37876 -27.01555 -25.95613 -24.86629 -23.40343 -23.22485 -21.81573 -20.58149 -19.35772 -19.13020 -19.02190 -17.41323 -17.22660 -16.87294 -16.21908 -15.85355 -15.57870 -15.40997 -15.17887 -15.16195 -15.09934 -14.58718 -14.17024 -14.04035 -13.93124 -13.81666 -13.42443 -13.22860 -13.06485 -13.01031 -12.93831 -12.66427 -12.56166 -12.22677 -12.19266 -12.12729 -11.98138 -11.95496 -11.77694 -11.53931 -11.39591 -11.20360 -11.05988 -9.92123 -9.59685 -9.20686 -9.05765 -8.01157 -5.30523 -0.43596 0.33802 0.89413 1.37524 1.42523 1.43869 1.53852 1.72578 2.06247 2.51355 3.31739 3.42877 3.68597 3.75481 3.96067 3.98680 4.09848 4.14909 4.22138 4.26441 4.32268 4.44699 4.46869 4.51559 4.52812 4.65713 4.80640 4.81718 4.83650 4.86932 4.90316 4.99241 5.03365 5.08462 5.10047 5.16746 5.32940 5.34102 5.38543 5.40443 5.45223 5.50934 5.56927 6.21624 6.28044 6.95510 7.28540 7.99496 8.25788 9.21616 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023291 B = 0.002948 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.899063 B = 9497.250029 C =10148.697064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C -0.199 4.199 4 S 0.250 5.750 5 C -0.293 4.293 6 C 0.578 3.422 7 O -0.585 6.585 8 N -0.596 5.596 9 C 0.089 3.911 10 C -0.118 4.118 11 C -0.117 4.117 12 C 0.168 3.832 13 H 0.031 0.969 14 N -0.728 5.728 15 C -0.245 4.245 16 H 0.064 0.936 17 C -0.067 4.067 18 N -0.963 5.963 19 Si 0.968 3.032 20 H -0.274 1.274 21 H -0.291 1.291 22 H -0.286 1.286 23 C 0.108 3.892 24 C -0.063 4.063 25 C -0.128 4.128 26 C -0.092 4.092 27 H 0.055 0.945 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.116 0.884 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.379 0.621 39 H 0.253 0.747 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.137 0.863 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.846 -29.672 7.081 31.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.094 4.094 3 C -0.318 4.318 4 S 0.521 5.479 5 C -0.413 4.413 6 C 0.367 3.633 7 O -0.467 6.467 8 N -0.328 5.328 9 C -0.033 4.033 10 C -0.156 4.156 11 C -0.156 4.156 12 C 0.058 3.942 13 H 0.049 0.951 14 N -0.368 5.368 15 C -0.377 4.377 16 H 0.082 0.918 17 C -0.260 4.260 18 N -0.613 5.613 19 Si 0.797 3.203 20 H -0.199 1.199 21 H -0.218 1.218 22 H -0.213 1.213 23 C -0.018 4.018 24 C -0.097 4.097 25 C -0.140 4.140 26 C -0.150 4.150 27 H 0.074 0.926 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.134 0.866 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.212 0.788 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.155 0.845 43 H 0.094 0.906 44 H 0.086 0.914 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.381 -29.575 5.868 31.294 hybrid contribution 1.082 2.028 1.634 2.820 sum -7.299 -27.546 7.502 29.468 Atomic orbital electron populations 1.21799 0.93207 1.03109 1.02421 1.20279 0.96936 0.87506 1.04637 1.24615 1.06765 1.03235 0.97190 1.82801 1.59110 0.99339 1.06695 1.24238 1.17994 0.99693 0.99341 1.17628 0.82300 0.84148 0.79239 1.90798 1.28148 1.66296 1.61450 1.48194 1.31965 1.18908 1.33741 1.22461 0.85073 0.96245 0.99564 1.21846 0.97741 0.94211 1.01830 1.21743 0.97422 0.96933 0.99479 1.20632 0.92695 0.84800 0.96042 0.95075 1.42493 1.72903 1.10870 1.10497 1.19536 1.31298 0.93553 0.93337 0.91798 1.25480 1.03046 1.00204 0.97236 1.69791 1.54707 1.24990 1.11772 0.85163 0.77652 0.79370 0.78134 1.19879 1.21795 1.21319 1.22325 0.99516 0.81568 0.98348 1.20685 0.97578 0.97079 0.94350 1.18770 1.04222 0.92842 0.98180 1.20565 1.03034 1.01401 0.90025 0.92601 0.90292 0.92435 0.89605 0.88500 0.87882 0.88932 0.92038 0.86594 0.91538 0.91071 0.78847 0.93760 0.91785 0.93185 0.84537 0.90567 0.91381 0.89621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 71.98 0.71 -0.37 16 2 C -0.05 -0.49 5.72 29.85 0.17 -0.32 16 3 C -0.20 -3.08 5.53 24.68 0.14 -2.94 16 4 S 0.25 4.53 19.84 -56.49 -1.12 3.41 16 5 C -0.29 -8.07 5.49 24.08 0.13 -7.94 16 6 C 0.58 21.04 7.54 86.42 0.65 21.69 16 7 O -0.58 -26.97 16.51 -4.37 -0.07 -27.04 16 8 N -0.60 -19.84 2.97 -823.73 -2.45 -22.29 16 9 C 0.09 2.03 5.88 86.36 0.51 2.54 16 10 C -0.12 -2.63 6.08 30.67 0.19 -2.44 16 11 C -0.12 -3.60 5.35 30.62 0.16 -3.44 16 12 C 0.17 6.97 2.92 45.07 0.13 7.10 16 13 H 0.03 1.40 8.08 -2.39 -0.02 1.39 16 14 N -0.73 -37.59 5.12 -322.57 -1.65 -39.24 16 15 C -0.25 -14.26 9.93 84.03 0.83 -13.42 16 16 H 0.06 3.74 7.83 -2.91 -0.02 3.72 16 17 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 18 N -0.96 -59.31 13.06 21.65 0.28 -59.03 16 19 Si 0.97 47.99 29.55 68.60 2.03 50.02 16 20 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 21 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 22 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 23 C 0.11 4.39 6.01 86.36 0.52 4.91 16 24 C -0.06 -1.58 10.02 21.72 0.22 -1.36 16 25 C -0.13 -2.34 5.78 -21.05 -0.12 -2.46 16 26 C -0.09 -1.13 9.55 71.23 0.68 -0.45 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.06 0.47 7.80 -2.39 -0.02 0.45 16 30 H 0.09 0.61 8.14 -2.39 -0.02 0.60 16 31 H 0.10 0.66 7.25 -2.39 -0.02 0.64 16 32 H 0.10 1.98 4.00 -16.23 -0.06 1.92 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.38 20.39 7.80 -92.71 -0.72 19.67 16 39 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 40 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.05 2.45 7.02 -2.38 -0.02 2.43 16 42 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 43 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.84 8.13 -2.39 -0.02 0.82 16 45 H 0.08 0.73 6.86 -2.39 -0.02 0.71 16 Total: -1.00 -75.12 372.14 2.62 -72.50 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: 0.21 Total: 24.03 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: 5.39 Total: -2.35 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -3.82 Total: -120.56 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.07 Total: -27.04 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.03 Total: 50.02 kcal Atomic # 16 Polarization: 4.53 SS G_CDS: -1.12 Total: 3.41 kcal Total: -75.12 2.62 -72.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000874568.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.256 kcal (2) G-P(sol) polarization free energy of solvation -75.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds