Wall clock time and date at job start Tue Mar 31 2020 13:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47286 * 2 1 4 4 C 1.50697 * 109.46805 * 120.00280 * 2 1 3 5 5 C 1.37477 * 123.35312 * 305.11826 * 4 2 1 6 6 C 1.33810 * 115.10066 * 180.27298 * 5 4 2 7 7 S 1.70621 * 110.95671 * 359.75537 * 6 5 4 8 8 C 1.36648 * 123.35029 * 124.92457 * 4 2 1 9 9 C 1.46577 * 125.45971 * 0.02562 * 8 4 2 10 10 O 1.21710 * 119.99565 * 275.00097 * 9 8 4 11 11 N 1.34778 * 120.00672 * 95.00057 * 9 8 4 12 12 C 1.46924 * 120.62749 * 354.91367 * 11 9 8 13 13 C 1.53194 * 108.77389 * 126.41454 * 12 11 9 14 14 C 1.53041 * 109.30908 * 54.63712 * 13 12 11 15 15 C 1.53041 * 109.53904 * 298.63286 * 14 13 12 16 16 H 1.08995 * 109.49801 * 301.38554 * 15 14 13 17 17 N 1.46499 * 109.49455 * 181.31655 * 15 14 13 18 18 C 1.36938 * 119.99553 * 155.00437 * 17 15 14 19 19 H 1.07996 * 120.00381 * 359.97438 * 18 17 15 20 20 C 1.38818 * 119.99838 * 180.02562 * 18 17 15 21 21 N 1.31624 * 120.00002 * 179.72127 * 20 18 17 22 22 Si 1.86796 * 119.99870 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.47248 * 90.00395 * 22 20 18 24 24 H 1.48507 * 109.47171 * 210.00055 * 22 20 18 25 25 H 1.48494 * 109.47238 * 330.00027 * 22 20 18 26 26 C 1.46920 * 120.63330 * 174.94568 * 11 9 8 27 27 H 1.09002 * 109.46566 * 300.00361 * 1 2 3 28 28 H 1.08993 * 109.46967 * 59.99801 * 1 2 3 29 29 H 1.08993 * 109.47231 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46825 * 240.00116 * 2 1 3 31 31 H 1.09001 * 109.47257 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47112 * 300.00241 * 3 2 1 33 33 H 1.08999 * 109.47101 * 59.99725 * 3 2 1 34 34 H 1.07997 * 122.44609 * 0.02562 * 5 4 2 35 35 H 1.08001 * 124.52448 * 179.77461 * 6 5 4 36 36 H 1.09008 * 109.58917 * 6.63361 * 12 11 9 37 37 H 1.08999 * 109.59136 * 246.20374 * 12 11 9 38 38 H 1.09001 * 109.50130 * 294.68868 * 13 12 11 39 39 H 1.09000 * 109.49881 * 174.59085 * 13 12 11 40 40 H 1.09003 * 109.45609 * 178.61226 * 14 13 12 41 41 H 1.08993 * 109.45255 * 58.65141 * 14 13 12 42 42 H 0.96999 * 120.00276 * 335.00238 * 17 15 14 43 43 H 0.96993 * 119.99928 * 179.97438 * 21 20 18 44 44 H 1.08993 * 109.59060 * 113.79654 * 26 11 9 45 45 H 1.08998 * 109.58682 * 353.36857 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6614 -0.3635 2.5079 6 6 2.2114 -1.1018 3.4790 7 16 3.2385 -2.2987 2.8282 8 6 2.8988 -1.7662 1.1872 9 6 3.4603 -2.3561 -0.0315 10 8 2.8352 -3.2042 -0.6408 11 7 4.6688 -1.9594 -0.4774 12 6 5.3860 -0.8597 0.1822 13 6 6.7901 -1.3428 0.5590 14 6 7.4885 -1.8903 -0.6878 15 6 6.6988 -3.0813 -1.2355 16 1 6.6249 -3.8523 -0.4687 17 7 7.3849 -3.6242 -2.4105 18 6 7.2003 -4.9334 -2.7669 19 1 6.5492 -5.5658 -2.1817 20 6 7.8508 -5.4480 -3.8800 21 7 7.6777 -6.7079 -4.2195 22 14 8.9776 -4.3545 -4.8918 23 1 10.3598 -4.4362 -4.3550 24 1 8.9683 -4.8078 -6.3060 25 1 8.5005 -2.9501 -4.8191 26 6 5.2936 -2.6179 -1.6326 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 0.9793 0.4483 2.7129 35 1 2.0292 -0.9593 4.5340 36 1 4.8486 -0.5608 1.0823 37 1 5.4617 -0.0122 -0.4991 38 1 6.7149 -2.1300 1.3091 39 1 7.3655 -0.5094 0.9621 40 1 8.4969 -2.2120 -0.4273 41 1 7.5411 -1.1096 -1.4466 42 1 7.9700 -3.0563 -2.9359 43 1 8.1319 -7.0674 -4.9974 44 1 5.3618 -1.9138 -2.4618 45 1 4.6953 -3.4791 -1.9300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000977331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:43 Heat of formation + Delta-G solvation = 1.473595 kcal Electronic energy + Delta-G solvation = -25689.790264 eV Core-core repulsion = 22219.805353 eV Total energy + Delta-G solvation = -3469.984912 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.25509 -38.66284 -37.24164 -34.61708 -34.28316 -32.35922 -31.36383 -30.14549 -28.58737 -27.33139 -25.70171 -24.36410 -23.73278 -22.06180 -21.78099 -21.02960 -19.66844 -18.11395 -17.60984 -17.54280 -16.64416 -16.18511 -15.14773 -14.89474 -14.61699 -14.32430 -14.29148 -14.05057 -13.81332 -13.67564 -13.54525 -13.11654 -12.95111 -12.75698 -12.59326 -12.49476 -12.30130 -12.24934 -11.66730 -11.62374 -11.33127 -11.22649 -10.97947 -10.93631 -10.81454 -10.74625 -10.66536 -10.32196 -9.92394 -9.88314 -9.59333 -9.12079 -8.83377 -8.60107 -8.43274 -7.31226 -5.78029 -3.15648 0.62680 1.20421 1.79506 2.39032 2.89515 3.20531 3.35950 3.38126 3.44531 4.49079 4.57020 4.57788 4.72033 4.81549 4.94255 4.99277 5.00955 5.15767 5.23419 5.34809 5.36021 5.42428 5.44050 5.47281 5.53754 5.62059 5.69680 5.77454 5.78426 5.86938 5.88212 5.93781 6.00843 6.06007 6.06654 6.19473 6.22486 6.27471 6.37076 6.62501 6.69605 6.87676 7.54116 7.97445 8.26611 8.40674 9.17555 9.89085 10.07436 11.39959 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018887 B = 0.003418 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.139712 B = 8189.436427 C = 8367.925740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.041 4.041 3 C -0.140 4.140 4 C -0.053 4.053 5 C -0.131 4.131 6 C -0.252 4.252 7 S 0.218 5.782 8 C -0.242 4.242 9 C 0.586 3.414 10 O -0.523 6.523 11 N -0.595 5.595 12 C 0.108 3.892 13 C -0.130 4.130 14 C -0.130 4.130 15 C 0.173 3.827 16 H 0.060 0.940 17 N -0.741 5.741 18 C -0.249 4.249 19 H 0.092 0.908 20 C 0.008 3.992 21 N -0.930 5.930 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C 0.093 3.907 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.140 0.860 35 H 0.166 0.834 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.060 0.940 42 H 0.363 0.637 43 H 0.260 0.740 44 H 0.062 0.938 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.979 19.495 16.318 27.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.062 4.062 3 C -0.198 4.198 4 C -0.067 4.067 5 C -0.163 4.163 6 C -0.389 4.389 7 S 0.487 5.513 8 C -0.363 4.363 9 C 0.370 3.630 10 O -0.399 6.399 11 N -0.329 5.329 12 C -0.016 4.016 13 C -0.168 4.168 14 C -0.168 4.168 15 C 0.062 3.938 16 H 0.078 0.922 17 N -0.383 5.383 18 C -0.379 4.379 19 H 0.109 0.891 20 C -0.188 4.188 21 N -0.577 5.577 22 Si 0.715 3.285 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.203 1.203 26 C -0.031 4.031 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.158 0.842 35 H 0.183 0.817 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.196 0.804 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.441 17.595 16.631 25.987 hybrid contribution -0.136 1.855 -1.295 2.267 sum -9.578 19.451 15.336 26.557 Atomic orbital electron populations 1.21801 0.93924 1.02339 1.01763 1.19876 0.96211 0.95681 0.94432 1.21810 1.01290 0.94751 1.01927 1.19256 0.96618 0.94965 0.95866 1.19711 1.03258 1.02469 0.90855 1.25184 1.06390 1.02980 1.04375 1.83306 1.42102 1.31287 0.94633 1.24474 1.08784 1.04676 0.98342 1.17072 0.81146 0.81778 0.82968 1.90873 1.59241 1.32091 1.57709 1.48185 1.17444 1.34935 1.32292 1.21749 0.93101 0.89134 0.97597 1.21881 0.95119 1.01209 0.98624 1.21870 0.99802 0.98408 0.96716 1.20464 0.89434 0.93622 0.90243 0.92193 1.42728 1.54413 1.10484 1.30721 1.19102 1.24187 0.85336 1.09273 0.89054 1.24682 1.00006 0.95861 0.98259 1.69706 1.46813 1.12749 1.28461 0.86557 0.81421 0.80268 0.80293 1.21043 1.21691 1.20311 1.22776 0.96478 0.97909 0.85977 0.92506 0.92194 0.92265 0.90303 0.92490 0.92162 0.92429 0.84250 0.81665 0.90214 0.91343 0.91318 0.90819 0.91210 0.92093 0.80429 0.92976 0.91934 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.99 37.16 0.33 -0.95 16 2 C -0.04 -0.43 3.12 -91.77 -0.29 -0.72 16 3 C -0.14 -1.15 9.09 37.15 0.34 -0.81 16 4 C -0.05 -0.60 4.72 -105.48 -0.50 -1.10 16 5 C -0.13 -1.20 9.17 -41.41 -0.38 -1.58 16 6 C -0.25 -2.18 10.92 29.18 0.32 -1.86 16 7 S 0.22 2.34 23.05 -107.50 -2.48 -0.14 16 8 C -0.24 -3.22 4.14 -36.80 -0.15 -3.37 16 9 C 0.59 9.83 6.42 -12.90 -0.08 9.75 16 10 O -0.52 -11.08 16.54 5.18 0.09 -10.99 16 11 N -0.60 -9.19 2.97 -174.35 -0.52 -9.71 16 12 C 0.11 1.25 6.35 -3.71 -0.02 1.22 16 13 C -0.13 -1.47 6.08 -26.61 -0.16 -1.63 16 14 C -0.13 -1.87 5.35 -26.69 -0.14 -2.01 16 15 C 0.17 3.28 2.92 -67.81 -0.20 3.08 16 16 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 17 N -0.74 -17.23 4.93 -53.31 -0.26 -17.49 16 18 C -0.25 -7.03 10.41 -15.06 -0.16 -7.19 16 19 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 20 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 21 N -0.93 -29.38 13.97 55.49 0.78 -28.61 16 22 Si 0.88 21.91 27.73 -169.99 -4.71 17.19 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.28 -6.40 6.52 56.52 0.37 -6.04 16 26 C 0.09 1.72 6.00 -3.71 -0.02 1.69 16 27 H 0.06 0.43 7.51 -51.93 -0.39 0.04 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 1.03 7.13 -51.93 -0.37 0.66 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.40 8.00 -51.93 -0.42 -0.01 16 34 H 0.14 0.99 7.68 -52.49 -0.40 0.58 16 35 H 0.17 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.08 0.82 6.30 -51.92 -0.33 0.50 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.36 8.18 5.66 -40.82 -0.23 7.95 16 43 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.10 2.12 7.03 -51.93 -0.37 1.76 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -33.44 372.36 -9.87 -43.32 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.16 Total: 6.16 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -1.21 Total: -5.34 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: -0.01 Total: -55.81 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.19 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.48 Total: -0.14 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.44 -9.87 -43.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000977331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.790 kcal (2) G-P(sol) polarization free energy of solvation -33.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds