Wall clock time and date at job start Tue Mar 31 2020 13:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52994 * 109.47286 * 2 1 4 4 C 1.50697 * 109.46805 * 120.00280 * 2 1 3 5 5 C 1.37477 * 123.35312 * 305.11826 * 4 2 1 6 6 C 1.33810 * 115.10066 * 180.27298 * 5 4 2 7 7 S 1.70621 * 110.95671 * 359.75537 * 6 5 4 8 8 C 1.36648 * 123.35029 * 124.92457 * 4 2 1 9 9 C 1.46577 * 125.45971 * 0.02562 * 8 4 2 10 10 O 1.21710 * 119.99565 * 275.00097 * 9 8 4 11 11 N 1.34778 * 120.00672 * 95.00057 * 9 8 4 12 12 C 1.46924 * 120.62749 * 354.91367 * 11 9 8 13 13 C 1.53194 * 108.77389 * 126.41454 * 12 11 9 14 14 C 1.53041 * 109.30908 * 54.63712 * 13 12 11 15 15 C 1.53041 * 109.53904 * 298.63286 * 14 13 12 16 16 H 1.08995 * 109.49801 * 301.38554 * 15 14 13 17 17 N 1.46499 * 109.49455 * 181.31655 * 15 14 13 18 18 C 1.36938 * 119.99553 * 155.00437 * 17 15 14 19 19 H 1.07996 * 120.00381 * 359.97438 * 18 17 15 20 20 C 1.38818 * 119.99838 * 180.02562 * 18 17 15 21 21 N 1.31624 * 120.00002 * 179.72127 * 20 18 17 22 22 Si 1.86796 * 119.99870 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.47248 * 90.00395 * 22 20 18 24 24 H 1.48507 * 109.47171 * 210.00055 * 22 20 18 25 25 H 1.48494 * 109.47238 * 330.00027 * 22 20 18 26 26 C 1.46920 * 120.63330 * 174.94568 * 11 9 8 27 27 H 1.09002 * 109.46566 * 300.00361 * 1 2 3 28 28 H 1.08993 * 109.46967 * 59.99801 * 1 2 3 29 29 H 1.08993 * 109.47231 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46825 * 240.00116 * 2 1 3 31 31 H 1.09001 * 109.47257 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47112 * 300.00241 * 3 2 1 33 33 H 1.08999 * 109.47101 * 59.99725 * 3 2 1 34 34 H 1.07997 * 122.44609 * 0.02562 * 5 4 2 35 35 H 1.08001 * 124.52448 * 179.77461 * 6 5 4 36 36 H 1.09008 * 109.58917 * 6.63361 * 12 11 9 37 37 H 1.08999 * 109.59136 * 246.20374 * 12 11 9 38 38 H 1.09001 * 109.50130 * 294.68868 * 13 12 11 39 39 H 1.09000 * 109.49881 * 174.59085 * 13 12 11 40 40 H 1.09003 * 109.45609 * 178.61226 * 14 13 12 41 41 H 1.08993 * 109.45255 * 58.65141 * 14 13 12 42 42 H 0.96999 * 120.00276 * 335.00238 * 17 15 14 43 43 H 0.96993 * 119.99928 * 179.97438 * 21 20 18 44 44 H 1.08993 * 109.59060 * 113.79654 * 26 11 9 45 45 H 1.08998 * 109.58682 * 353.36857 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 6 1.6614 -0.3635 2.5079 6 6 2.2114 -1.1018 3.4790 7 16 3.2385 -2.2987 2.8282 8 6 2.8988 -1.7662 1.1872 9 6 3.4603 -2.3561 -0.0315 10 8 2.8352 -3.2042 -0.6408 11 7 4.6688 -1.9594 -0.4774 12 6 5.3860 -0.8597 0.1822 13 6 6.7901 -1.3428 0.5590 14 6 7.4885 -1.8903 -0.6878 15 6 6.6988 -3.0813 -1.2355 16 1 6.6249 -3.8523 -0.4687 17 7 7.3849 -3.6242 -2.4105 18 6 7.2003 -4.9334 -2.7669 19 1 6.5492 -5.5658 -2.1817 20 6 7.8508 -5.4480 -3.8800 21 7 7.6777 -6.7079 -4.2195 22 14 8.9776 -4.3545 -4.8918 23 1 10.3598 -4.4362 -4.3550 24 1 8.9683 -4.8078 -6.3060 25 1 8.5005 -2.9501 -4.8191 26 6 5.2936 -2.6179 -1.6326 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 3.1301 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 0.9793 0.4483 2.7129 35 1 2.0292 -0.9593 4.5340 36 1 4.8486 -0.5608 1.0823 37 1 5.4617 -0.0122 -0.4991 38 1 6.7149 -2.1300 1.3091 39 1 7.3655 -0.5094 0.9621 40 1 8.4969 -2.2120 -0.4273 41 1 7.5411 -1.1096 -1.4466 42 1 7.9700 -3.0563 -2.9359 43 1 8.1319 -7.0674 -4.9974 44 1 5.3618 -1.9138 -2.4618 45 1 4.6953 -3.4791 -1.9300 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000977331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:42 Heat of formation + Delta-G solvation = -20.016718 kcal Electronic energy + Delta-G solvation = -25690.722154 eV Core-core repulsion = 22219.805353 eV Total energy + Delta-G solvation = -3470.916802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.46359 -39.63217 -38.62686 -36.35192 -35.02537 -34.04685 -32.96952 -31.36046 -30.01912 -28.00246 -26.83645 -25.73345 -25.18197 -23.18026 -22.81672 -22.35055 -21.00767 -19.60207 -19.18382 -18.49815 -17.75761 -17.26805 -16.74473 -16.21921 -16.05670 -15.70711 -15.37031 -15.07434 -15.01697 -14.66741 -14.61742 -14.41373 -14.26948 -14.07210 -13.88394 -13.53232 -13.30750 -13.24248 -12.98683 -12.93146 -12.57284 -12.36053 -12.18857 -12.07440 -11.96324 -11.90427 -11.81898 -11.75245 -11.62900 -11.40589 -11.24636 -11.08108 -9.91757 -9.69599 -9.41071 -9.30677 -8.06072 -5.42782 -0.20767 0.28007 1.02530 1.35913 1.41628 1.48557 1.61282 1.67061 1.98358 2.46054 3.24461 3.44764 3.50732 3.81987 3.89267 3.94284 4.01735 4.06311 4.22059 4.26048 4.29438 4.30996 4.47548 4.54011 4.60708 4.65601 4.79545 4.80902 4.81096 4.85834 4.96985 4.98444 5.05991 5.08758 5.14422 5.24467 5.31880 5.37834 5.39599 5.42473 5.44624 5.50988 5.72014 6.17315 6.29514 6.97558 7.03168 7.74699 7.97504 9.15789 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018887 B = 0.003418 C = 0.003345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.139712 B = 8189.436427 C = 8367.925740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.046 4.046 3 C -0.134 4.134 4 C -0.038 4.038 5 C -0.138 4.138 6 C -0.224 4.224 7 S 0.209 5.791 8 C -0.286 4.286 9 C 0.584 3.416 10 O -0.587 6.587 11 N -0.592 5.592 12 C 0.104 3.896 13 C -0.121 4.121 14 C -0.120 4.120 15 C 0.171 3.829 16 H 0.031 0.969 17 N -0.742 5.742 18 C -0.241 4.241 19 H 0.043 0.957 20 C -0.063 4.063 21 N -0.985 5.985 22 Si 0.964 3.036 23 H -0.272 1.272 24 H -0.297 1.297 25 H -0.246 1.246 26 C 0.105 3.895 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.036 0.964 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.171 0.829 35 H 0.201 0.799 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.117 0.883 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.371 0.629 43 H 0.259 0.741 44 H 0.071 0.929 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.450 24.520 18.618 32.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.067 4.067 3 C -0.191 4.191 4 C -0.053 4.053 5 C -0.169 4.169 6 C -0.360 4.360 7 S 0.478 5.522 8 C -0.406 4.406 9 C 0.372 3.628 10 O -0.468 6.468 11 N -0.324 5.324 12 C -0.018 4.018 13 C -0.160 4.160 14 C -0.158 4.158 15 C 0.061 3.939 16 H 0.049 0.951 17 N -0.385 5.385 18 C -0.371 4.371 19 H 0.061 0.939 20 C -0.254 4.254 21 N -0.635 5.635 22 Si 0.790 3.210 23 H -0.198 1.198 24 H -0.223 1.223 25 H -0.170 1.170 26 C -0.020 4.020 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.188 0.812 35 H 0.218 0.782 36 H 0.117 0.883 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.135 0.865 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.206 0.794 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.900 22.702 18.996 30.910 hybrid contribution -0.439 0.255 -1.889 1.956 sum -9.340 22.957 17.107 30.115 Atomic orbital electron populations 1.21793 0.92884 1.01403 1.03456 1.19929 0.97091 0.96926 0.92737 1.21779 1.01187 0.92861 1.03318 1.19544 0.94829 0.93697 0.97201 1.19929 1.03900 1.03522 0.89511 1.25596 1.03920 1.00607 1.05924 1.83354 1.43209 1.32523 0.93163 1.24132 1.11721 1.06880 0.97872 1.17639 0.80874 0.80737 0.83598 1.90824 1.61029 1.35043 1.59912 1.48227 1.17416 1.35389 1.31339 1.22085 0.93004 0.88107 0.98572 1.21888 0.94884 1.02389 0.96827 1.21799 0.99277 0.96340 0.98431 1.20625 0.90163 0.94951 0.88133 0.95076 1.42631 1.55095 1.08724 1.32070 1.18956 1.22545 0.87120 1.08518 0.93851 1.25623 1.02401 0.97548 0.99863 1.69918 1.48768 1.15380 1.29396 0.85294 0.79015 0.79360 0.77365 1.19806 1.22341 1.17042 1.22281 0.95502 0.96592 0.87656 0.89990 0.91333 0.94503 0.94064 0.92626 0.91545 0.90265 0.81174 0.78188 0.88290 0.89234 0.92002 0.86488 0.90788 0.90313 0.79432 0.93189 0.91119 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 8.99 71.99 0.65 -1.68 16 2 C -0.05 -0.92 3.12 -11.54 -0.04 -0.95 16 3 C -0.13 -1.81 9.09 71.98 0.65 -1.15 16 4 C -0.04 -0.79 4.72 -20.42 -0.10 -0.88 16 5 C -0.14 -1.99 9.17 21.08 0.19 -1.79 16 6 C -0.22 -2.98 10.92 66.81 0.73 -2.25 16 7 S 0.21 4.21 23.05 -56.49 -1.30 2.91 16 8 C -0.29 -7.59 4.14 24.07 0.10 -7.49 16 9 C 0.58 20.86 6.42 86.42 0.55 21.41 16 10 O -0.59 -27.50 16.54 -4.38 -0.07 -27.57 16 11 N -0.59 -18.83 2.97 -823.73 -2.45 -21.27 16 12 C 0.10 2.17 6.35 86.36 0.55 2.72 16 13 C -0.12 -2.38 6.08 30.67 0.19 -2.19 16 14 C -0.12 -3.21 5.35 30.62 0.16 -3.04 16 15 C 0.17 6.67 2.92 45.07 0.13 6.80 16 16 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 17 N -0.74 -35.14 4.93 -322.57 -1.59 -36.73 16 18 C -0.24 -14.32 10.41 84.03 0.88 -13.45 16 19 H 0.04 2.93 8.06 -2.91 -0.02 2.91 16 20 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 21 N -0.98 -65.27 13.97 21.65 0.30 -64.97 16 22 Si 0.96 45.68 27.73 68.60 1.90 47.59 16 23 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 25 H -0.25 -10.31 6.52 99.48 0.65 -9.66 16 26 C 0.11 4.12 6.00 86.36 0.52 4.64 16 27 H 0.08 0.96 7.51 -2.39 -0.02 0.95 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 29 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.04 1.12 7.13 -2.39 -0.02 1.11 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 0.74 8.00 -2.39 -0.02 0.72 16 34 H 0.17 1.44 7.68 -2.91 -0.02 1.42 16 35 H 0.20 1.29 8.06 -2.91 -0.02 1.27 16 36 H 0.10 1.77 6.30 -2.38 -0.02 1.75 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.37 16.24 5.66 -92.71 -0.52 15.72 16 43 H 0.26 16.25 8.31 -92.71 -0.77 15.48 16 44 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 45 H 0.04 2.15 7.03 -2.39 -0.02 2.13 16 Total: -1.00 -81.73 372.36 2.83 -78.91 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.40 Total: 23.81 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 5.64 Total: -2.67 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -3.74 Total: -122.97 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.07 Total: -27.57 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 1.90 Total: 47.59 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.30 Total: 2.91 kcal Total: -81.73 2.83 -78.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000977331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.889 kcal (2) G-P(sol) polarization free energy of solvation -81.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds