Wall clock time and date at job start Tue Mar 31 2020 13:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46992 * 2 1 4 4 C 1.50702 * 109.47234 * 119.99805 * 2 1 3 5 5 C 1.33811 * 124.52433 * 119.72132 * 4 2 1 6 6 C 1.37471 * 115.10426 * 180.27062 * 5 4 2 7 7 C 1.36652 * 113.29408 * 359.97438 * 6 5 4 8 8 C 1.46585 * 125.45544 * 180.02562 * 7 6 5 9 9 O 1.21701 * 120.00351 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99866 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00158 * 180.02562 * 10 8 7 12 12 C 1.53039 * 109.45948 * 275.07349 * 11 10 8 13 13 C 1.53190 * 109.31195 * 178.61309 * 12 11 10 14 14 N 1.46923 * 108.77685 * 54.63267 * 13 12 11 15 15 C 1.36934 * 120.63352 * 126.41410 * 14 13 12 16 16 H 1.08006 * 119.99775 * 331.82487 * 15 14 13 17 17 C 1.38815 * 120.00508 * 151.82654 * 15 14 13 18 18 N 1.31617 * 119.99449 * 343.07722 * 17 15 14 19 19 Si 1.86796 * 120.00220 * 163.07931 * 17 15 14 20 20 H 1.48498 * 109.47050 * 60.00010 * 19 17 15 21 21 H 1.48508 * 109.46986 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47424 * 299.99636 * 19 17 15 23 23 C 1.46927 * 118.74048 * 306.39511 * 14 13 12 24 24 C 1.53032 * 109.46062 * 155.00387 * 11 10 8 25 25 S 1.70615 * 124.51911 * 300.02643 * 4 2 1 26 26 H 1.08997 * 109.47084 * 299.99737 * 1 2 3 27 27 H 1.08994 * 109.46896 * 60.00708 * 1 2 3 28 28 H 1.09003 * 109.46297 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47250 * 239.99734 * 2 1 3 30 30 H 1.08999 * 109.47284 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46743 * 300.00259 * 3 2 1 32 32 H 1.08997 * 109.46947 * 59.99420 * 3 2 1 33 33 H 1.08003 * 122.44932 * 0.24834 * 5 4 2 34 34 H 1.07997 * 123.35332 * 180.02562 * 6 5 4 35 35 H 0.97003 * 120.00069 * 0.02562 * 10 8 7 36 36 H 1.08995 * 109.45767 * 35.02970 * 11 10 8 37 37 H 1.09000 * 109.49748 * 298.56360 * 12 11 10 38 38 H 1.08995 * 109.49993 * 58.66327 * 12 11 10 39 39 H 1.08997 * 109.58786 * 294.84743 * 13 12 11 40 40 H 1.08999 * 109.71126 * 174.49036 * 13 12 11 41 41 H 0.97006 * 119.99862 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.58714 * 293.81720 * 23 14 13 43 43 H 1.08994 * 109.70601 * 173.46406 * 23 14 13 44 44 H 1.09005 * 109.49764 * 301.33588 * 24 11 10 45 45 H 1.09004 * 109.50088 * 61.40338 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7104 1.2305 5 6 2.8006 -1.8059 1.2132 6 6 3.1427 -2.2979 2.4505 7 6 2.6283 -1.5667 3.4839 8 6 2.8257 -1.8517 4.9082 9 8 3.4954 -2.8086 5.2502 10 7 2.2656 -1.0540 5.8390 11 6 2.4633 -1.3385 7.2625 12 6 1.4262 -2.3639 7.7263 13 6 1.6578 -2.6848 9.2062 14 7 1.6483 -1.4294 9.9694 15 6 0.8214 -1.2760 11.0500 16 1 -0.1097 -1.8212 11.0992 17 6 1.1796 -0.4198 12.0823 18 7 2.4270 -0.0168 12.1999 19 14 -0.1085 0.1601 13.3044 20 1 -0.6955 -1.0137 13.9992 21 1 0.5250 1.0595 14.3020 22 1 -1.1790 0.8952 12.5839 23 6 2.5434 -0.3418 9.5515 24 6 2.3019 -0.0472 8.0677 25 16 1.6916 -0.2293 2.8315 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1276 -2.2700 0.2944 34 1 3.7575 -3.1746 2.5916 35 1 1.7315 -0.2915 5.5665 36 1 3.4648 -1.7399 7.4168 37 1 0.4250 -1.9535 7.5954 38 1 1.5264 -3.2750 7.1365 39 1 2.6221 -3.1783 9.3265 40 1 0.8649 -3.3389 9.5689 41 1 2.6775 0.5812 12.9215 42 1 3.5801 -0.6442 9.7000 43 1 2.3356 0.5518 10.1400 44 1 3.0254 0.6907 7.7209 45 1 1.2926 0.3418 7.9331 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001004230319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:12 Heat of formation + Delta-G solvation = -1.808225 kcal Electronic energy + Delta-G solvation = -24555.303813 eV Core-core repulsion = 21085.176590 eV Total energy + Delta-G solvation = -3470.127222 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.80054 -38.46012 -37.26096 -35.38111 -34.42391 -32.19502 -30.30613 -29.75232 -28.81094 -27.60965 -25.61778 -24.54945 -22.43772 -22.14972 -21.61503 -20.79869 -19.80996 -19.02899 -17.88968 -16.80858 -16.28878 -15.68172 -15.11478 -14.95844 -14.78924 -14.68548 -14.07278 -14.05545 -13.74849 -13.54259 -13.40143 -13.01906 -12.89069 -12.65473 -12.50815 -12.34321 -12.32951 -11.74681 -11.59363 -11.55715 -11.46227 -11.11925 -10.94627 -10.87004 -10.71439 -10.50565 -10.29086 -10.04830 -9.98082 -9.73915 -9.52538 -8.95338 -8.78613 -8.67532 -8.45194 -6.68337 -5.79353 -3.21589 0.34891 1.25079 1.69293 2.23877 3.27276 3.29892 3.39031 3.44290 3.45482 4.16863 4.45246 4.49770 4.66964 4.83005 4.95144 5.14464 5.16889 5.26449 5.33389 5.37264 5.38377 5.41628 5.49822 5.55533 5.58340 5.72384 5.77621 5.83617 5.86710 5.97891 6.07771 6.16129 6.24921 6.31765 6.52563 6.56297 6.58292 6.79839 6.88653 6.99771 7.31315 7.57064 7.67135 7.79682 8.29637 8.44858 9.20894 9.84053 10.41309 11.29669 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023799 B = 0.002546 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.243996 B =10997.112382 C =11571.459558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C -0.149 4.149 4 C -0.191 4.191 5 C -0.153 4.153 6 C -0.058 4.058 7 C -0.262 4.262 8 C 0.585 3.415 9 O -0.531 6.531 10 N -0.719 5.719 11 C 0.151 3.849 12 C -0.139 4.139 13 C 0.148 3.852 14 N -0.593 5.593 15 C -0.253 4.253 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.904 5.904 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.291 1.291 22 H -0.284 1.284 23 C 0.175 3.825 24 C -0.147 4.147 25 S 0.202 5.798 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.142 0.858 34 H 0.152 0.848 35 H 0.392 0.608 36 H 0.084 0.916 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.021 0.979 40 H 0.057 0.943 41 H 0.255 0.745 42 H 0.021 0.979 43 H 0.092 0.908 44 H 0.055 0.945 45 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.760 2.434 -26.056 26.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.048 4.048 3 C -0.207 4.207 4 C -0.311 4.311 5 C -0.183 4.183 6 C -0.090 4.090 7 C -0.382 4.382 8 C 0.371 3.629 9 O -0.409 6.409 10 N -0.368 5.368 11 C 0.049 3.951 12 C -0.180 4.180 13 C 0.021 3.979 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.083 0.917 17 C -0.196 4.196 18 N -0.548 5.548 19 Si 0.733 3.267 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.210 1.210 23 C 0.048 3.952 24 C -0.187 4.187 25 S 0.470 5.530 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.160 0.840 34 H 0.170 0.830 35 H 0.226 0.774 36 H 0.103 0.897 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.040 0.960 43 H 0.110 0.890 44 H 0.073 0.927 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.042 3.044 -24.967 25.235 hybrid contribution 0.001 -0.534 -0.266 0.596 sum -2.041 2.510 -25.233 25.439 Atomic orbital electron populations 1.21951 0.93744 1.02572 1.02449 1.19772 0.96032 0.95710 0.93256 1.21948 1.01706 0.94609 1.02446 1.24279 1.04948 1.01686 1.00147 1.19962 1.02017 0.97482 0.98879 1.20740 0.98322 0.99756 0.90232 1.24773 1.11337 1.04219 0.97878 1.16985 0.79651 0.82849 0.83425 1.90828 1.40011 1.28750 1.81342 1.46258 1.52842 1.30286 1.07446 1.21105 1.00219 0.97018 0.76799 1.22387 0.98507 0.97980 0.99109 1.20871 0.98718 0.89465 0.88856 1.44083 1.46605 1.09304 1.31537 1.19150 0.98265 1.24992 0.95837 0.91684 1.25056 0.95664 1.01965 0.96965 1.70017 1.15029 1.36839 1.32907 0.86358 0.81061 0.78574 0.80704 1.20875 1.21639 1.21046 1.20736 0.92595 0.93806 0.88024 1.22555 1.01188 0.94911 1.00071 1.82926 1.47669 1.26474 0.95915 0.92239 0.91717 0.92046 0.89329 0.92047 0.91730 0.92241 0.84030 0.83026 0.77417 0.89748 0.92267 0.92641 0.96123 0.92484 0.93535 0.96045 0.88971 0.92659 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.08 37.16 0.34 -0.54 16 2 C -0.03 -0.18 3.25 -91.76 -0.30 -0.47 16 3 C -0.15 -0.87 9.08 37.16 0.34 -0.53 16 4 C -0.19 -1.66 4.95 -35.86 -0.18 -1.83 16 5 C -0.15 -1.41 9.95 -41.41 -0.41 -1.82 16 6 C -0.06 -0.66 10.01 -40.43 -0.40 -1.07 16 7 C -0.26 -3.36 6.45 -36.79 -0.24 -3.60 16 8 C 0.59 9.38 7.75 -12.89 -0.10 9.28 16 9 O -0.53 -10.36 16.50 5.19 0.09 -10.28 16 10 N -0.72 -10.91 5.07 -55.11 -0.28 -11.19 16 11 C 0.15 2.72 2.41 -67.89 -0.16 2.56 16 12 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 13 C 0.15 3.22 6.52 -3.71 -0.02 3.20 16 14 N -0.59 -14.88 2.99 -172.32 -0.52 -15.40 16 15 C -0.25 -6.92 9.58 -15.06 -0.14 -7.07 16 16 H 0.07 1.75 7.89 -52.48 -0.41 1.33 16 17 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 18 N -0.90 -26.09 11.19 55.49 0.62 -25.47 16 19 Si 0.90 21.56 29.59 -169.99 -5.03 16.53 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 24 C -0.15 -2.73 5.55 -26.62 -0.15 -2.88 16 25 S 0.20 1.95 21.37 -107.50 -2.30 -0.34 16 26 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.48 8.07 -51.93 -0.42 0.06 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 33 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.39 5.01 7.72 -40.82 -0.31 4.70 16 36 H 0.08 1.69 7.58 -51.93 -0.39 1.29 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.09 2.40 6.07 -51.93 -0.31 2.09 16 44 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -31.29 375.38 -10.75 -42.03 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.30 Total: 1.93 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.69 Total: -3.48 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.17 Total: -52.06 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.28 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.53 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.30 Total: -0.34 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.29 -10.75 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004230319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.226 kcal (2) G-P(sol) polarization free energy of solvation -31.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds