Wall clock time and date at job start Tue Mar 31 2020 13:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53001 * 109.46992 * 2 1 4 4 C 1.50702 * 109.47234 * 119.99805 * 2 1 3 5 5 C 1.33811 * 124.52433 * 119.72132 * 4 2 1 6 6 C 1.37471 * 115.10426 * 180.27062 * 5 4 2 7 7 C 1.36652 * 113.29408 * 359.97438 * 6 5 4 8 8 C 1.46585 * 125.45544 * 180.02562 * 7 6 5 9 9 O 1.21701 * 120.00351 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99866 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00158 * 180.02562 * 10 8 7 12 12 C 1.53039 * 109.45948 * 275.07349 * 11 10 8 13 13 C 1.53190 * 109.31195 * 178.61309 * 12 11 10 14 14 N 1.46923 * 108.77685 * 54.63267 * 13 12 11 15 15 C 1.36934 * 120.63352 * 126.41410 * 14 13 12 16 16 H 1.08006 * 119.99775 * 331.82487 * 15 14 13 17 17 C 1.38815 * 120.00508 * 151.82654 * 15 14 13 18 18 N 1.31617 * 119.99449 * 343.07722 * 17 15 14 19 19 Si 1.86796 * 120.00220 * 163.07931 * 17 15 14 20 20 H 1.48498 * 109.47050 * 60.00010 * 19 17 15 21 21 H 1.48508 * 109.46986 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47424 * 299.99636 * 19 17 15 23 23 C 1.46927 * 118.74048 * 306.39511 * 14 13 12 24 24 C 1.53032 * 109.46062 * 155.00387 * 11 10 8 25 25 S 1.70615 * 124.51911 * 300.02643 * 4 2 1 26 26 H 1.08997 * 109.47084 * 299.99737 * 1 2 3 27 27 H 1.08994 * 109.46896 * 60.00708 * 1 2 3 28 28 H 1.09003 * 109.46297 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47250 * 239.99734 * 2 1 3 30 30 H 1.08999 * 109.47284 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46743 * 300.00259 * 3 2 1 32 32 H 1.08997 * 109.46947 * 59.99420 * 3 2 1 33 33 H 1.08003 * 122.44932 * 0.24834 * 5 4 2 34 34 H 1.07997 * 123.35332 * 180.02562 * 6 5 4 35 35 H 0.97003 * 120.00069 * 0.02562 * 10 8 7 36 36 H 1.08995 * 109.45767 * 35.02970 * 11 10 8 37 37 H 1.09000 * 109.49748 * 298.56360 * 12 11 10 38 38 H 1.08995 * 109.49993 * 58.66327 * 12 11 10 39 39 H 1.08997 * 109.58786 * 294.84743 * 13 12 11 40 40 H 1.08999 * 109.71126 * 174.49036 * 13 12 11 41 41 H 0.97006 * 119.99862 * 180.02562 * 18 17 15 42 42 H 1.09005 * 109.58714 * 293.81720 * 23 14 13 43 43 H 1.08994 * 109.70601 * 173.46406 * 23 14 13 44 44 H 1.09005 * 109.49764 * 301.33588 * 24 11 10 45 45 H 1.09004 * 109.50088 * 61.40338 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0325 -0.7104 1.2305 5 6 2.8006 -1.8059 1.2132 6 6 3.1427 -2.2979 2.4505 7 6 2.6283 -1.5667 3.4839 8 6 2.8257 -1.8517 4.9082 9 8 3.4954 -2.8086 5.2502 10 7 2.2656 -1.0540 5.8390 11 6 2.4633 -1.3385 7.2625 12 6 1.4262 -2.3639 7.7263 13 6 1.6578 -2.6848 9.2062 14 7 1.6483 -1.4294 9.9694 15 6 0.8214 -1.2760 11.0500 16 1 -0.1097 -1.8212 11.0992 17 6 1.1796 -0.4198 12.0823 18 7 2.4270 -0.0168 12.1999 19 14 -0.1085 0.1601 13.3044 20 1 -0.6955 -1.0137 13.9992 21 1 0.5250 1.0595 14.3020 22 1 -1.1790 0.8952 12.5839 23 6 2.5434 -0.3418 9.5515 24 6 2.3019 -0.0472 8.0677 25 16 1.6916 -0.2293 2.8315 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1301 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 3.1276 -2.2700 0.2944 34 1 3.7575 -3.1746 2.5916 35 1 1.7315 -0.2915 5.5665 36 1 3.4648 -1.7399 7.4168 37 1 0.4250 -1.9535 7.5954 38 1 1.5264 -3.2750 7.1365 39 1 2.6221 -3.1783 9.3265 40 1 0.8649 -3.3389 9.5689 41 1 2.6775 0.5812 12.9215 42 1 3.5801 -0.6442 9.7000 43 1 2.3356 0.5518 10.1400 44 1 3.0254 0.6907 7.7209 45 1 1.2926 0.3418 7.9331 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001004230319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:11 Heat of formation + Delta-G solvation = -19.473989 kcal Electronic energy + Delta-G solvation = -24556.069858 eV Core-core repulsion = 21085.176590 eV Total energy + Delta-G solvation = -3470.893267 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.08929 -39.40268 -38.73735 -36.13196 -35.94589 -33.99979 -31.95447 -31.41222 -29.90010 -28.03250 -27.13908 -25.82053 -24.04187 -23.75259 -22.35817 -21.93567 -21.25772 -20.24564 -19.05734 -18.54217 -17.44003 -16.86042 -16.68602 -16.18346 -16.09116 -15.50556 -15.36963 -15.32827 -14.96650 -14.79533 -14.68060 -14.33866 -14.23417 -14.05787 -13.45823 -13.29456 -13.18500 -13.00686 -12.92832 -12.60776 -12.55973 -12.38108 -12.25926 -12.11392 -12.07636 -12.05203 -11.89841 -11.62023 -11.56036 -11.41388 -11.12755 -10.56109 -10.19665 -9.65170 -9.53178 -8.72298 -7.88415 -5.34396 -0.52239 0.44167 0.90729 1.38038 1.49087 1.50747 1.58123 2.04567 2.14942 2.51933 3.27505 3.57870 3.62404 3.73001 3.89800 3.98208 4.01131 4.21058 4.27457 4.32124 4.42243 4.44816 4.61283 4.63372 4.74015 4.76909 4.81525 4.84016 4.95562 4.96253 5.00834 5.07764 5.10550 5.11088 5.21717 5.26156 5.34088 5.35622 5.41846 5.42431 5.44679 5.63309 5.68978 6.37738 6.42349 7.07761 7.13483 7.82525 8.36017 9.18825 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.023799 B = 0.002546 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.243996 B =10997.112382 C =11571.459558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.028 4.028 3 C -0.150 4.150 4 C -0.177 4.177 5 C -0.161 4.161 6 C -0.053 4.053 7 C -0.303 4.303 8 C 0.586 3.414 9 O -0.576 6.576 10 N -0.709 5.709 11 C 0.162 3.838 12 C -0.124 4.124 13 C 0.146 3.854 14 N -0.609 5.609 15 C -0.266 4.266 16 H 0.068 0.932 17 C -0.049 4.049 18 N -0.936 5.936 19 Si 0.970 3.030 20 H -0.277 1.277 21 H -0.294 1.294 22 H -0.275 1.275 23 C 0.180 3.820 24 C -0.130 4.130 25 S 0.233 5.767 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.105 0.895 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.054 0.946 33 H 0.167 0.833 34 H 0.146 0.854 35 H 0.407 0.593 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.008 0.992 40 H 0.060 0.940 41 H 0.251 0.749 42 H -0.004 1.004 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 3.522 -28.798 29.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.048 4.048 3 C -0.208 4.208 4 C -0.297 4.297 5 C -0.191 4.191 6 C -0.088 4.088 7 C -0.423 4.423 8 C 0.374 3.626 9 O -0.457 6.457 10 N -0.359 5.359 11 C 0.058 3.942 12 C -0.165 4.165 13 C 0.019 3.981 14 N -0.332 5.332 15 C -0.396 4.396 16 H 0.085 0.915 17 C -0.245 4.245 18 N -0.581 5.581 19 Si 0.798 3.202 20 H -0.203 1.203 21 H -0.220 1.220 22 H -0.201 1.201 23 C 0.053 3.947 24 C -0.169 4.169 25 S 0.502 5.498 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.076 0.924 29 H 0.123 0.877 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.184 0.816 34 H 0.164 0.836 35 H 0.243 0.757 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.026 0.974 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.014 0.986 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.714 4.146 -27.744 28.297 hybrid contribution 0.531 -0.894 0.474 1.143 sum -3.183 3.252 -27.270 27.647 Atomic orbital electron populations 1.21971 0.93164 1.02565 1.03084 1.19927 0.96427 0.95964 0.92524 1.21968 1.01541 0.94186 1.03085 1.24734 1.03339 1.01028 1.00597 1.20133 1.02311 0.97816 0.98822 1.20928 0.97504 0.99309 0.91018 1.24504 1.14551 1.07055 0.96203 1.17383 0.78546 0.81953 0.84733 1.90797 1.41962 1.30627 1.82355 1.45967 1.53054 1.30820 1.06057 1.20737 0.98753 0.96277 0.78467 1.22185 0.99078 0.98487 0.96713 1.20950 0.98155 0.88413 0.90543 1.44339 1.46508 1.10733 1.31643 1.19488 0.98648 1.24912 0.96526 0.91459 1.25835 0.97434 1.02312 0.98877 1.70179 1.16834 1.37525 1.33600 0.85303 0.78629 0.77956 0.78307 1.20309 1.22024 1.20070 1.20553 0.90942 0.92283 0.90877 1.22286 1.02440 0.95705 0.96512 1.82768 1.46326 1.24523 0.96209 0.92727 0.90068 0.92380 0.87682 0.92357 0.90086 0.92715 0.81558 0.83606 0.75720 0.92045 0.91405 0.92237 0.97394 0.92196 0.93958 0.98640 0.91622 0.90436 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.08 71.99 0.65 -0.63 16 2 C -0.03 -0.26 3.25 -11.54 -0.04 -0.30 16 3 C -0.15 -1.27 9.08 71.98 0.65 -0.62 16 4 C -0.18 -2.59 4.95 24.68 0.12 -2.46 16 5 C -0.16 -2.59 9.95 21.08 0.21 -2.38 16 6 C -0.05 -1.18 10.01 21.72 0.22 -0.96 16 7 C -0.30 -7.53 6.45 24.08 0.16 -7.38 16 8 C 0.59 18.72 7.75 86.42 0.67 19.39 16 9 O -0.58 -23.04 16.50 -4.35 -0.07 -23.11 16 10 N -0.71 -20.95 5.07 -446.48 -2.26 -23.22 16 11 C 0.16 5.80 2.41 45.02 0.11 5.91 16 12 C -0.12 -4.63 5.65 30.67 0.17 -4.46 16 13 C 0.15 6.45 6.52 86.36 0.56 7.01 16 14 N -0.61 -31.14 2.99 -699.11 -2.09 -33.23 16 15 C -0.27 -14.69 9.58 84.03 0.81 -13.88 16 16 H 0.07 3.61 7.89 -2.91 -0.02 3.59 16 17 C -0.05 -2.74 4.92 84.86 0.42 -2.32 16 18 N -0.94 -55.37 11.19 21.65 0.24 -55.13 16 19 Si 0.97 44.57 29.59 68.60 2.03 46.60 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 C 0.18 8.69 5.30 86.36 0.46 9.15 16 24 C -0.13 -4.76 5.55 30.67 0.17 -4.59 16 25 S 0.23 4.02 21.37 -56.49 -1.21 2.81 16 26 H 0.05 0.52 7.90 -2.39 -0.02 0.51 16 27 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.11 0.71 8.07 -2.39 -0.02 0.69 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.52 7.90 -2.39 -0.02 0.50 16 33 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.41 9.69 7.72 -92.71 -0.72 8.98 16 36 H 0.06 2.52 7.58 -2.39 -0.02 2.50 16 37 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.06 2.57 7.93 -2.39 -0.02 2.55 16 41 H 0.25 14.39 8.31 -92.70 -0.77 13.62 16 42 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 43 H 0.07 3.52 6.07 -2.39 -0.01 3.51 16 44 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 45 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -68.99 375.38 2.24 -66.75 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 0.26 Total: 17.03 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 5.34 Total: 1.49 kcal Atomic # 7 Polarization: -107.46 SS G_CDS: -4.11 Total: -111.58 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.07 Total: -23.11 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Atomic # 16 Polarization: 4.02 SS G_CDS: -1.21 Total: 2.81 kcal Total: -68.99 2.24 -66.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001004230319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.275 kcal (2) G-P(sol) polarization free energy of solvation -68.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds