Wall clock time and date at job start Tue Mar 31 2020 13:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46860 * 2 1 4 4 C 1.50695 * 109.46926 * 179.97438 * 3 2 1 5 5 C 1.33811 * 124.52904 * 89.99752 * 4 3 2 6 6 C 1.37470 * 115.10629 * 179.76804 * 5 4 3 7 7 C 1.36654 * 113.29510 * 0.45548 * 6 5 4 8 8 C 1.46578 * 125.45478 * 179.83576 * 7 6 5 9 9 O 1.21697 * 120.00429 * 359.72158 * 8 7 6 10 10 N 1.34780 * 119.99590 * 179.71758 * 8 7 6 11 11 C 1.46503 * 120.00081 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.49226 * 324.93471 * 11 10 8 13 13 C 1.53103 * 109.48768 * 204.85478 * 11 10 8 14 14 C 1.53046 * 109.50171 * 178.69867 * 13 11 10 15 15 C 1.53192 * 109.33691 * 61.34884 * 14 13 11 16 16 N 1.46925 * 108.77573 * 305.34892 * 15 14 13 17 17 C 1.36939 * 120.62956 * 233.63611 * 16 15 14 18 18 H 1.08004 * 120.00334 * 152.62623 * 17 16 15 19 19 C 1.38814 * 120.00086 * 332.61713 * 17 16 15 20 20 N 1.31614 * 120.00208 * 159.34648 * 19 17 16 21 21 Si 1.86805 * 119.99784 * 339.34741 * 19 17 16 22 22 H 1.48502 * 109.46940 * 92.96249 * 21 19 17 23 23 H 1.48497 * 109.47139 * 212.96129 * 21 19 17 24 24 H 1.48499 * 109.47200 * 332.96020 * 21 19 17 25 25 C 1.46928 * 118.74259 * 53.60637 * 16 15 14 26 26 S 1.70622 * 124.51929 * 270.02029 * 4 3 2 27 27 H 1.08999 * 109.46831 * 60.00766 * 1 2 3 28 28 H 1.09003 * 109.46829 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47436 * 300.00551 * 1 2 3 30 30 H 1.08999 * 109.47436 * 239.99449 * 2 1 3 31 31 H 1.08999 * 109.46831 * 119.99234 * 2 1 3 32 32 H 1.08999 * 109.47546 * 59.99516 * 3 2 1 33 33 H 1.08999 * 109.46773 * 299.99269 * 3 2 1 34 34 H 1.08002 * 122.44450 * 0.04164 * 5 4 3 35 35 H 1.07999 * 123.35532 * 180.26670 * 6 5 4 36 36 H 0.97003 * 119.99991 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.50820 * 58.67170 * 13 11 10 38 38 H 1.09001 * 109.44767 * 298.69000 * 13 11 10 39 39 H 1.08997 * 109.49698 * 301.38081 * 14 13 11 40 40 H 1.08999 * 109.49437 * 181.31516 * 14 13 11 41 41 H 1.08996 * 109.58846 * 65.13656 * 15 14 13 42 42 H 1.08995 * 109.58480 * 185.42002 * 15 14 13 43 43 H 0.97002 * 120.00185 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.58113 * 66.18288 * 25 16 15 45 45 H 1.08994 * 109.58724 * 186.60279 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3059 1.4424 -1.1014 6 6 5.6619 1.4475 -0.8758 7 6 5.9890 1.4419 0.4510 8 6 7.3518 1.4419 0.9907 9 8 8.3057 1.4421 0.2350 10 7 7.5485 1.4418 2.3241 11 6 8.9105 1.4424 2.8636 12 1 9.5587 0.8525 2.2156 13 6 8.9034 0.8355 4.2693 14 6 10.3308 0.8062 4.8204 15 6 10.8679 2.2378 4.9141 16 7 10.7433 2.8768 3.5969 17 6 11.8292 3.4568 2.9973 18 1 11.8802 3.5231 1.9205 19 6 12.8645 3.9596 3.7733 20 7 14.0563 4.1390 3.2444 21 14 12.5662 4.3814 5.5685 22 1 12.9143 3.2128 6.4160 23 1 13.4120 5.5403 5.9518 24 1 11.1353 4.7266 5.7647 25 6 9.4315 2.8812 2.9350 26 16 4.5132 1.4423 1.4069 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9565 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.8838 1.4428 -2.0956 35 1 6.3957 1.4522 -1.6682 36 1 6.7882 1.4421 2.9265 37 1 8.5102 -0.1801 4.2252 38 1 8.2742 1.4403 4.9224 39 1 10.9660 0.2222 4.1544 40 1 10.3288 0.3528 5.8116 41 1 10.2889 2.7980 5.6482 42 1 11.9155 2.2162 5.2143 43 1 14.7796 4.4907 3.7866 44 1 8.7354 3.4939 3.5078 45 1 9.5321 3.2839 1.9273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007435850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:55 Heat of formation + Delta-G solvation = 2.902875 kcal Electronic energy + Delta-G solvation = -24486.103195 eV Core-core repulsion = 21016.180261 eV Total energy + Delta-G solvation = -3469.922933 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.82065 -38.38188 -37.46192 -35.22032 -34.44711 -32.52825 -30.83118 -30.80431 -29.30911 -26.96854 -25.30252 -24.17827 -22.86822 -21.99001 -21.86424 -21.04051 -19.94722 -19.06192 -17.98628 -16.82573 -16.38122 -15.73652 -15.42412 -15.30109 -15.03187 -14.86696 -14.22394 -13.99373 -13.87558 -13.75214 -13.44153 -13.21894 -12.96150 -12.85998 -12.66936 -12.32497 -12.13930 -12.07492 -11.84492 -11.61647 -11.52684 -11.27277 -11.14800 -11.02563 -10.90965 -10.75816 -10.16148 -10.03279 -9.85331 -9.70945 -9.44791 -9.07055 -8.83635 -8.79182 -8.50397 -6.95402 -5.90375 -3.26983 0.34374 1.24375 1.66592 2.24408 3.21210 3.30241 3.33246 3.49951 3.52920 4.25481 4.50347 4.55777 4.59009 4.78577 4.90244 5.02935 5.04489 5.14345 5.18343 5.26112 5.27925 5.33592 5.37332 5.42844 5.52242 5.60536 5.66420 5.80315 5.81338 5.83344 5.92984 5.96933 6.04724 6.17850 6.19330 6.30941 6.42392 6.50111 6.62508 6.65639 6.77570 6.93713 7.59187 7.99506 8.29865 8.38623 8.97998 9.75496 10.11081 11.25524 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027787 B = 0.002566 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.406691 B =10910.076091 C =11324.156931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.051 4.051 4 C -0.195 4.195 5 C -0.151 4.151 6 C -0.056 4.056 7 C -0.258 4.258 8 C 0.585 3.415 9 O -0.520 6.520 10 N -0.719 5.719 11 C 0.126 3.874 12 H 0.093 0.907 13 C -0.117 4.117 14 C -0.131 4.131 15 C 0.122 3.878 16 N -0.601 5.601 17 C -0.258 4.258 18 H 0.087 0.913 19 C 0.023 3.977 20 N -0.907 5.907 21 Si 0.883 3.117 22 H -0.288 1.288 23 H -0.303 1.303 24 H -0.271 1.271 25 C 0.144 3.856 26 S 0.193 5.807 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.143 0.857 35 H 0.154 0.846 36 H 0.392 0.608 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.026 0.974 42 H 0.075 0.925 43 H 0.262 0.738 44 H 0.023 0.977 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.706 -9.006 -3.024 29.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.090 4.090 4 C -0.315 4.315 5 C -0.182 4.182 6 C -0.089 4.089 7 C -0.378 4.378 8 C 0.370 3.630 9 O -0.397 6.397 10 N -0.370 5.370 11 C 0.021 3.979 12 H 0.111 0.889 13 C -0.155 4.155 14 C -0.171 4.171 15 C -0.004 4.004 16 N -0.325 5.325 17 C -0.386 4.386 18 H 0.105 0.895 19 C -0.176 4.176 20 N -0.550 5.550 21 Si 0.714 3.286 22 H -0.216 1.216 23 H -0.232 1.232 24 H -0.197 1.197 25 C 0.017 3.983 26 S 0.461 5.539 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.160 0.840 35 H 0.171 0.829 36 H 0.225 0.775 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.044 0.956 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.041 0.959 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -27.110 -8.917 -1.994 28.609 hybrid contribution -0.163 0.320 -0.274 0.452 sum -27.273 -8.597 -2.269 28.686 Atomic orbital electron populations 1.21783 0.95302 1.01982 1.01978 1.21571 0.95945 0.95546 1.02828 1.20248 0.87149 0.98055 1.03576 1.24202 1.01010 1.08517 0.97759 1.19952 0.92601 1.06071 0.99532 1.20777 0.96155 0.96596 0.95338 1.24712 0.96893 1.18197 0.98025 1.16954 0.86597 0.76838 0.82572 1.90883 1.41538 1.49390 1.57896 1.45994 1.09683 1.75351 1.05947 1.21769 0.81159 1.00346 0.94644 0.88875 1.21701 0.98491 0.99943 0.95339 1.21999 0.95198 0.99773 1.00159 1.21400 1.00145 0.90867 0.87975 1.44289 1.05602 1.64311 1.18271 1.18955 0.94652 1.32317 0.92697 0.89543 1.25273 0.95661 0.98978 0.97694 1.69844 1.00429 1.47997 1.36741 0.86944 0.77860 0.77220 0.86603 1.21621 1.23173 1.19650 1.21221 0.87014 0.92234 0.97851 1.82907 0.94532 1.68534 1.07942 0.92551 0.92434 0.92583 0.91449 0.91669 0.90604 0.89794 0.83961 0.82881 0.77499 0.92338 0.92058 0.91320 0.92167 0.95642 0.90712 0.92790 0.95934 0.91327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 9.91 37.16 0.37 -0.32 16 2 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 3 C -0.05 -0.31 5.65 -27.88 -0.16 -0.47 16 4 C -0.20 -1.66 5.53 -35.86 -0.20 -1.85 16 5 C -0.15 -1.39 9.99 -41.42 -0.41 -1.80 16 6 C -0.06 -0.65 10.01 -40.43 -0.40 -1.06 16 7 C -0.26 -3.30 6.45 -36.79 -0.24 -3.54 16 8 C 0.59 9.43 7.75 -12.90 -0.10 9.33 16 9 O -0.52 -10.60 16.50 5.19 0.09 -10.52 16 10 N -0.72 -10.48 5.08 -55.00 -0.28 -10.76 16 11 C 0.13 2.19 2.60 -67.78 -0.18 2.02 16 12 H 0.09 1.88 7.58 -51.93 -0.39 1.48 16 13 C -0.12 -1.74 5.36 -26.65 -0.14 -1.88 16 14 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 15 C 0.12 2.65 4.20 -3.71 -0.02 2.63 16 16 N -0.60 -14.72 2.77 -172.32 -0.48 -15.20 16 17 C -0.26 -7.48 10.04 -15.06 -0.15 -7.63 16 18 H 0.09 2.73 8.06 -52.48 -0.42 2.30 16 19 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 20 N -0.91 -28.42 13.97 55.49 0.78 -27.64 16 21 Si 0.88 22.63 24.35 -169.99 -4.14 18.49 16 22 H -0.29 -7.06 6.62 56.52 0.37 -6.69 16 23 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 24 H -0.27 -6.81 6.63 56.52 0.37 -6.44 16 25 C 0.14 3.03 6.09 -3.71 -0.02 3.01 16 26 S 0.19 1.78 22.10 -107.50 -2.38 -0.59 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.39 4.51 7.72 -40.82 -0.31 4.19 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.54 7.08 -51.93 -0.37 0.17 16 42 H 0.07 1.78 4.50 -51.93 -0.23 1.55 16 43 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 1.58 7.93 -51.93 -0.41 1.17 16 LS Contribution 370.93 15.07 5.59 5.59 Total: -1.00 -33.67 370.93 -10.14 -43.80 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.25 Total: 1.06 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.06 Total: -4.24 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.02 Total: -53.60 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.14 Total: 18.49 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.38 Total: -0.59 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.67 -10.14 -43.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007435850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.704 kcal (2) G-P(sol) polarization free energy of solvation -33.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds