Wall clock time and date at job start Tue Mar 31 2020 13:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46860 * 2 1 4 4 C 1.50695 * 109.46926 * 179.97438 * 3 2 1 5 5 C 1.33811 * 124.52904 * 89.99752 * 4 3 2 6 6 C 1.37470 * 115.10629 * 179.76804 * 5 4 3 7 7 C 1.36654 * 113.29510 * 0.45548 * 6 5 4 8 8 C 1.46578 * 125.45478 * 179.83576 * 7 6 5 9 9 O 1.21697 * 120.00429 * 359.72158 * 8 7 6 10 10 N 1.34780 * 119.99590 * 179.71758 * 8 7 6 11 11 C 1.46503 * 120.00081 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.49226 * 324.93471 * 11 10 8 13 13 C 1.53103 * 109.48768 * 204.85478 * 11 10 8 14 14 C 1.53046 * 109.50171 * 178.69867 * 13 11 10 15 15 C 1.53192 * 109.33691 * 61.34884 * 14 13 11 16 16 N 1.46925 * 108.77573 * 305.34892 * 15 14 13 17 17 C 1.36939 * 120.62956 * 233.63611 * 16 15 14 18 18 H 1.08004 * 120.00334 * 152.62623 * 17 16 15 19 19 C 1.38814 * 120.00086 * 332.61713 * 17 16 15 20 20 N 1.31614 * 120.00208 * 159.34648 * 19 17 16 21 21 Si 1.86805 * 119.99784 * 339.34741 * 19 17 16 22 22 H 1.48502 * 109.46940 * 92.96249 * 21 19 17 23 23 H 1.48497 * 109.47139 * 212.96129 * 21 19 17 24 24 H 1.48499 * 109.47200 * 332.96020 * 21 19 17 25 25 C 1.46928 * 118.74259 * 53.60637 * 16 15 14 26 26 S 1.70622 * 124.51929 * 270.02029 * 4 3 2 27 27 H 1.08999 * 109.46831 * 60.00766 * 1 2 3 28 28 H 1.09003 * 109.46829 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47436 * 300.00551 * 1 2 3 30 30 H 1.08999 * 109.47436 * 239.99449 * 2 1 3 31 31 H 1.08999 * 109.46831 * 119.99234 * 2 1 3 32 32 H 1.08999 * 109.47546 * 59.99516 * 3 2 1 33 33 H 1.08999 * 109.46773 * 299.99269 * 3 2 1 34 34 H 1.08002 * 122.44450 * 0.04164 * 5 4 3 35 35 H 1.07999 * 123.35532 * 180.26670 * 6 5 4 36 36 H 0.97003 * 119.99991 * 359.97438 * 10 8 7 37 37 H 1.08998 * 109.50820 * 58.67170 * 13 11 10 38 38 H 1.09001 * 109.44767 * 298.69000 * 13 11 10 39 39 H 1.08997 * 109.49698 * 301.38081 * 14 13 11 40 40 H 1.08999 * 109.49437 * 181.31516 * 14 13 11 41 41 H 1.08996 * 109.58846 * 65.13656 * 15 14 13 42 42 H 1.08995 * 109.58480 * 185.42002 * 15 14 13 43 43 H 0.97002 * 120.00185 * 179.97438 * 20 19 17 44 44 H 1.09005 * 109.58113 * 66.18288 * 25 16 15 45 45 H 1.08994 * 109.58724 * 186.60279 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 6 4.3059 1.4424 -1.1014 6 6 5.6619 1.4475 -0.8758 7 6 5.9890 1.4419 0.4510 8 6 7.3518 1.4419 0.9907 9 8 8.3057 1.4421 0.2350 10 7 7.5485 1.4418 2.3241 11 6 8.9105 1.4424 2.8636 12 1 9.5587 0.8525 2.2156 13 6 8.9034 0.8355 4.2693 14 6 10.3308 0.8062 4.8204 15 6 10.8679 2.2378 4.9141 16 7 10.7433 2.8768 3.5969 17 6 11.8292 3.4568 2.9973 18 1 11.8802 3.5231 1.9205 19 6 12.8645 3.9596 3.7733 20 7 14.0563 4.1390 3.2444 21 14 12.5662 4.3814 5.5685 22 1 12.9143 3.2128 6.4160 23 1 13.4120 5.5403 5.9518 24 1 11.1353 4.7266 5.7647 25 6 9.4315 2.8812 2.9350 26 16 4.5132 1.4423 1.4069 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9565 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.8838 1.4428 -2.0956 35 1 6.3957 1.4522 -1.6682 36 1 6.7882 1.4421 2.9265 37 1 8.5102 -0.1801 4.2252 38 1 8.2742 1.4403 4.9224 39 1 10.9660 0.2222 4.1544 40 1 10.3288 0.3528 5.8116 41 1 10.2889 2.7980 5.6482 42 1 11.9155 2.2162 5.2143 43 1 14.7796 4.4907 3.7866 44 1 8.7354 3.4939 3.5078 45 1 9.5321 3.2839 1.9273 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007435850.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:54 Heat of formation + Delta-G solvation = -19.294300 kcal Electronic energy + Delta-G solvation = -24487.065737 eV Core-core repulsion = 21016.180261 eV Total energy + Delta-G solvation = -3470.885475 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.12310 -39.47001 -38.74810 -36.07195 -35.75472 -34.34027 -32.72473 -31.74338 -30.55068 -27.80752 -27.22210 -25.02864 -24.11262 -23.77112 -22.32213 -22.26703 -21.44977 -20.14729 -18.99898 -18.77211 -17.53992 -17.14534 -16.88902 -16.41202 -16.03960 -15.76112 -15.70452 -15.47718 -15.00205 -14.88754 -14.62077 -14.57244 -14.19921 -14.12503 -13.77804 -13.54111 -13.35489 -13.32168 -12.86003 -12.70087 -12.62049 -12.46376 -12.35530 -12.05928 -11.94000 -11.87702 -11.69318 -11.52091 -11.50508 -11.39074 -11.20150 -10.80684 -10.32172 -9.66264 -9.53047 -8.95584 -8.18940 -5.53387 -0.53949 0.43628 0.87148 1.29188 1.36579 1.41358 1.51909 1.98556 2.14494 2.40143 3.03275 3.32308 3.66047 3.72516 3.86799 3.99777 4.06819 4.07792 4.17748 4.28629 4.29684 4.38737 4.42060 4.62569 4.63251 4.66419 4.73331 4.86615 4.89408 4.96183 4.98143 4.98580 5.04280 5.05769 5.16238 5.17549 5.25125 5.30102 5.30273 5.42110 5.47569 5.48561 5.82198 6.08575 6.41422 6.87076 7.10328 7.57410 7.95213 9.01353 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.027787 B = 0.002566 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.406691 B =10910.076091 C =11324.156931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.052 4.052 4 C -0.181 4.181 5 C -0.161 4.161 6 C -0.057 4.057 7 C -0.302 4.302 8 C 0.582 3.418 9 O -0.579 6.579 10 N -0.704 5.704 11 C 0.138 3.862 12 H 0.056 0.944 13 C -0.107 4.107 14 C -0.126 4.126 15 C 0.112 3.888 16 N -0.617 5.617 17 C -0.257 4.257 18 H 0.034 0.966 19 C -0.039 4.039 20 N -0.959 5.959 21 Si 0.961 3.039 22 H -0.265 1.265 23 H -0.310 1.310 24 H -0.257 1.257 25 C 0.145 3.855 26 S 0.246 5.754 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.165 0.835 35 H 0.140 0.860 36 H 0.411 0.589 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.049 0.951 40 H 0.101 0.899 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.263 0.737 44 H 0.044 0.956 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.115 -10.020 -0.114 33.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.091 4.091 4 C -0.301 4.301 5 C -0.191 4.191 6 C -0.091 4.091 7 C -0.422 4.422 8 C 0.370 3.630 9 O -0.460 6.460 10 N -0.355 5.355 11 C 0.032 3.968 12 H 0.074 0.926 13 C -0.144 4.144 14 C -0.165 4.165 15 C -0.012 4.012 16 N -0.342 5.342 17 C -0.387 4.387 18 H 0.052 0.948 19 C -0.233 4.233 20 N -0.604 5.604 21 Si 0.788 3.212 22 H -0.191 1.191 23 H -0.239 1.239 24 H -0.181 1.181 25 C 0.018 3.982 26 S 0.515 5.485 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.116 0.884 34 H 0.182 0.818 35 H 0.158 0.842 36 H 0.248 0.752 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.068 0.932 40 H 0.119 0.881 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -31.601 -9.966 0.963 33.149 hybrid contribution 1.091 0.617 -1.331 1.829 sum -30.510 -9.349 -0.369 31.912 Atomic orbital electron populations 1.21770 0.94377 1.02282 1.02475 1.21559 0.96717 0.94951 1.02542 1.20405 0.84993 0.98750 1.04940 1.24667 1.02414 1.05725 0.97275 1.20070 0.91329 1.06670 1.01034 1.20925 0.97365 0.95932 0.94895 1.24452 0.96788 1.21707 0.99285 1.17471 0.87523 0.75424 0.82546 1.90850 1.43858 1.52099 1.59225 1.45735 1.09192 1.74725 1.05895 1.21364 0.81934 0.97250 0.96276 0.92552 1.21682 0.97614 1.02163 0.92988 1.21926 0.95993 0.96369 1.02228 1.21573 0.99482 0.93748 0.86376 1.44351 1.05436 1.64837 1.19535 1.18761 0.96444 1.32608 0.90858 0.94809 1.26028 0.94964 0.99084 1.03235 1.70001 1.01561 1.49799 1.39082 0.85708 0.78144 0.77081 0.80276 1.19108 1.23899 1.18090 1.21268 0.86171 0.95005 0.95720 1.82607 0.91718 1.67270 1.06952 0.92059 0.92298 0.92107 0.91812 0.91982 0.89355 0.88372 0.81793 0.84215 0.75184 0.88967 0.89229 0.93244 0.88060 0.93630 0.93059 0.92777 0.93813 0.95276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 71.98 0.71 -0.19 16 2 C -0.12 -0.95 5.92 30.60 0.18 -0.77 16 3 C -0.05 -0.44 5.65 29.85 0.17 -0.27 16 4 C -0.18 -2.55 5.53 24.68 0.14 -2.42 16 5 C -0.16 -2.70 9.99 21.08 0.21 -2.49 16 6 C -0.06 -1.34 10.01 21.72 0.22 -1.13 16 7 C -0.30 -7.68 6.45 24.08 0.16 -7.52 16 8 C 0.58 19.42 7.75 86.42 0.67 20.09 16 9 O -0.58 -25.56 16.50 -4.34 -0.07 -25.63 16 10 N -0.70 -19.99 5.08 -446.12 -2.26 -22.25 16 11 C 0.14 4.78 2.60 45.09 0.12 4.90 16 12 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 13 C -0.11 -2.79 5.36 30.64 0.16 -2.62 16 14 C -0.13 -3.96 6.08 30.67 0.19 -3.77 16 15 C 0.11 4.66 4.20 86.36 0.36 5.03 16 16 N -0.62 -30.75 2.77 -699.11 -1.94 -32.69 16 17 C -0.26 -15.76 10.04 84.03 0.84 -14.92 16 18 H 0.03 2.36 8.06 -2.91 -0.02 2.33 16 19 C -0.04 -2.36 5.23 84.86 0.44 -1.92 16 20 N -0.96 -62.93 13.97 21.65 0.30 -62.62 16 21 Si 0.96 47.26 24.35 68.60 1.67 48.93 16 22 H -0.26 -11.97 6.62 99.48 0.66 -11.31 16 23 H -0.31 -15.49 7.11 99.48 0.71 -14.78 16 24 H -0.26 -11.89 6.63 99.48 0.66 -11.23 16 25 C 0.14 6.23 6.09 86.36 0.53 6.76 16 26 S 0.25 3.90 22.10 -56.49 -1.25 2.65 16 27 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 28 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.06 0.31 8.14 -2.39 -0.02 0.30 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 35 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 36 H 0.41 8.35 7.72 -92.71 -0.72 7.64 16 37 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.05 1.74 7.08 -2.39 -0.02 1.72 16 42 H 0.05 2.37 4.50 -2.39 -0.01 2.35 16 43 H 0.26 16.23 8.31 -92.71 -0.77 15.46 16 44 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 45 H 0.03 1.44 7.93 -2.39 -0.02 1.42 16 Total: -1.00 -80.37 370.93 1.72 -78.65 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.17 Total: 14.21 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 5.10 Total: -1.25 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -3.90 Total: -117.56 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.07 Total: -25.63 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.67 Total: 48.93 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -1.25 Total: 2.65 kcal Total: -80.37 1.72 -78.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007435850.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.352 kcal (2) G-P(sol) polarization free energy of solvation -80.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds