Wall clock time and date at job start Tue Mar 31 2020 13:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 C 1.50701 * 109.47126 * 180.02562 * 3 2 1 5 5 C 1.33812 * 124.51893 * 90.00429 * 4 3 2 6 6 C 1.37478 * 115.09745 * 179.97438 * 5 4 3 7 7 C 1.36644 * 113.29645 * 359.97438 * 6 5 4 8 8 C 1.46591 * 125.45713 * 179.97438 * 7 6 5 9 9 O 1.21700 * 119.99582 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99892 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99832 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.52390 * 35.07564 * 11 10 8 13 13 C 1.53041 * 109.49816 * 155.15979 * 11 10 8 14 14 C 1.53040 * 109.53848 * 181.31319 * 13 11 10 15 15 C 1.53630 * 109.24096 * 298.51216 * 14 13 11 16 16 N 1.46931 * 108.54020 * 54.85674 * 15 14 13 17 17 C 1.36940 * 120.62955 * 126.37085 * 16 15 14 18 18 H 1.07996 * 119.99881 * 209.02484 * 17 16 15 19 19 C 1.38810 * 120.00019 * 29.01976 * 17 16 15 20 20 N 1.31624 * 119.99803 * 24.34685 * 19 17 16 21 21 Si 1.86801 * 120.00199 * 204.34637 * 19 17 16 22 22 H 1.48499 * 109.47165 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47155 * 59.99883 * 21 19 17 24 24 H 1.48506 * 109.46826 * 300.00225 * 21 19 17 25 25 C 1.46927 * 118.73904 * 306.08842 * 16 15 14 26 26 S 1.70614 * 124.52108 * 270.27361 * 4 3 2 27 27 H 1.09001 * 109.46862 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47048 * 299.99824 * 1 2 3 29 29 H 1.09002 * 109.47039 * 59.99873 * 1 2 3 30 30 H 1.08998 * 109.47242 * 240.00666 * 2 1 3 31 31 H 1.08996 * 109.47409 * 119.99960 * 2 1 3 32 32 H 1.09004 * 109.47160 * 59.99917 * 3 2 1 33 33 H 1.09004 * 109.47535 * 300.00454 * 3 2 1 34 34 H 1.08000 * 122.45653 * 359.93815 * 5 4 3 35 35 H 1.08005 * 123.35207 * 180.02562 * 6 5 4 36 36 H 0.96997 * 120.00161 * 359.97438 * 10 8 7 37 37 H 1.08994 * 109.46181 * 301.33810 * 13 11 10 38 38 H 1.09007 * 109.45788 * 61.30859 * 13 11 10 39 39 H 1.09003 * 109.49715 * 58.58491 * 14 13 11 40 40 H 1.08998 * 109.49520 * 178.68573 * 14 13 11 41 41 H 1.09000 * 109.74105 * 295.12179 * 15 14 13 42 42 H 1.09003 * 109.66306 * 174.54658 * 15 14 13 43 43 H 0.96995 * 120.00246 * 5.77739 * 20 19 17 44 44 H 1.09000 * 109.58078 * 173.64840 * 25 16 15 45 45 H 1.08997 * 109.58583 * 293.93686 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3049 1.4428 -1.1035 6 6 5.6612 1.4433 -0.8790 7 6 5.9894 1.4440 0.4474 8 6 7.3528 1.4442 0.9861 9 8 8.3060 1.4441 0.2294 10 7 7.5506 1.4454 2.3192 11 6 8.9132 1.4461 2.8575 12 1 9.5608 2.0360 2.2089 13 6 8.9071 2.0535 4.2622 14 6 10.3348 2.0847 4.8125 15 6 10.8716 0.6485 4.9093 16 7 10.7474 0.0134 3.5902 17 6 11.8329 -0.5673 2.9905 18 1 11.8977 -0.6070 1.9132 19 6 12.8500 -1.1049 3.7672 20 7 12.6002 -1.4983 4.9982 21 14 14.5734 -1.2701 3.0655 22 1 15.4687 -1.8691 4.0877 23 1 15.0836 0.0715 2.6849 24 1 14.5376 -2.1447 1.8658 25 6 9.4350 0.0076 2.9297 26 16 4.5145 1.4356 1.4047 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.8820 1.4420 -2.0973 35 1 6.3943 1.4440 -1.6721 36 1 6.7909 1.4466 2.9223 37 1 8.5130 3.0687 4.2173 38 1 8.2791 1.4488 4.9166 39 1 10.9691 2.6686 4.1455 40 1 10.3329 2.5387 5.8034 41 1 10.2910 0.0870 5.6413 42 1 11.9197 0.6680 5.2083 43 1 11.6904 -1.4910 5.3345 44 1 9.5350 -0.3958 1.9220 45 1 8.7405 -0.6070 3.5022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007435851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:59 Heat of formation + Delta-G solvation = -6.602852 kcal Electronic energy + Delta-G solvation = -24474.814708 eV Core-core repulsion = 21004.479575 eV Total energy + Delta-G solvation = -3470.335133 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.79277 -38.34882 -37.36052 -35.20657 -34.49538 -32.57606 -30.76319 -30.36269 -28.89431 -26.86969 -25.08356 -24.12473 -22.62765 -22.10175 -21.84513 -20.84956 -19.79997 -18.94625 -17.95600 -17.36013 -16.40454 -15.73167 -15.30905 -15.06218 -14.99200 -14.32271 -14.19188 -13.98370 -13.87719 -13.56421 -13.43988 -13.37250 -12.94860 -12.75070 -12.58074 -12.31779 -12.13453 -11.99783 -11.82194 -11.60232 -11.25781 -11.19547 -11.01357 -10.74310 -10.69047 -10.36722 -10.14112 -10.04809 -9.96731 -9.75701 -9.31700 -9.00157 -8.81448 -8.77407 -8.28729 -6.85665 -6.03274 -3.21564 0.34769 1.24823 1.67179 2.24489 3.23770 3.31133 3.54612 3.57073 3.75298 4.26512 4.51921 4.60686 4.63248 4.82865 4.91264 5.05569 5.14892 5.19622 5.27031 5.32591 5.34965 5.37849 5.38355 5.56607 5.60789 5.62733 5.67842 5.81350 5.85070 5.93414 5.96988 6.03825 6.12990 6.17926 6.36824 6.43803 6.54901 6.56272 6.71553 6.87988 7.06538 7.18257 7.61771 8.07630 8.31584 8.61636 9.14006 9.87684 10.30323 11.24752 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022788 B = 0.002537 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.398381 B =11031.859065 C =11308.778341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.051 4.051 4 C -0.196 4.196 5 C -0.151 4.151 6 C -0.057 4.057 7 C -0.258 4.258 8 C 0.585 3.415 9 O -0.523 6.523 10 N -0.718 5.718 11 C 0.128 3.872 12 H 0.089 0.911 13 C -0.116 4.116 14 C -0.134 4.134 15 C 0.147 3.853 16 N -0.594 5.594 17 C -0.347 4.347 18 H 0.057 0.943 19 C -0.024 4.024 20 N -0.917 5.917 21 Si 1.065 2.935 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.292 1.292 25 C 0.144 3.856 26 S 0.194 5.806 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.391 0.609 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.018 0.982 42 H 0.081 0.919 43 H 0.268 0.732 44 H 0.060 0.940 45 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.194 7.896 -6.726 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.090 4.090 4 C -0.315 4.315 5 C -0.182 4.182 6 C -0.089 4.089 7 C -0.378 4.378 8 C 0.370 3.630 9 O -0.401 6.401 10 N -0.369 5.369 11 C 0.023 3.977 12 H 0.107 0.893 13 C -0.154 4.154 14 C -0.174 4.174 15 C 0.022 3.978 16 N -0.318 5.318 17 C -0.476 4.476 18 H 0.074 0.926 19 C -0.226 4.226 20 N -0.557 5.557 21 Si 0.895 3.105 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.219 1.219 25 C 0.016 3.984 26 S 0.462 5.538 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.160 0.840 35 H 0.171 0.829 36 H 0.225 0.775 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.099 0.901 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -22.186 7.423 -5.345 23.998 hybrid contribution -1.819 0.425 -1.758 2.565 sum -24.005 7.848 -7.103 26.235 Atomic orbital electron populations 1.21780 0.95284 1.02023 1.01921 1.21579 0.95959 0.95514 1.02929 1.20247 0.87113 0.98102 1.03511 1.24213 1.01035 1.08505 0.97770 1.19948 0.92589 1.06123 0.99515 1.20768 0.96145 0.96713 0.95318 1.24723 0.96927 1.18138 0.98039 1.16960 0.86581 0.76833 0.82600 1.90867 1.41667 1.49656 1.57869 1.46021 1.09799 1.75122 1.05913 1.21764 0.80894 1.00504 0.94581 0.89255 1.21685 0.98824 0.99584 0.95292 1.22134 0.94828 1.00737 0.99662 1.21102 1.00756 0.88794 0.87192 1.44074 1.04551 1.64373 1.18826 1.20004 0.99245 1.36047 0.92296 0.92562 1.25885 1.04333 0.95544 0.96804 1.70789 1.23585 1.43150 1.18179 0.83522 0.75862 0.76179 0.74947 1.21114 1.21975 1.21942 1.21188 0.87874 0.91835 0.97492 1.82930 0.94492 1.68452 1.07906 0.92395 0.92591 0.92586 0.91418 0.91601 0.90622 0.89823 0.83960 0.82931 0.77530 0.92708 0.92188 0.91964 0.92439 0.96361 0.90079 0.92141 0.92160 0.96642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16 3 C -0.05 -0.32 5.65 -27.88 -0.16 -0.48 16 4 C -0.20 -1.73 5.53 -35.86 -0.20 -1.92 16 5 C -0.15 -1.44 9.99 -41.41 -0.41 -1.85 16 6 C -0.06 -0.68 10.01 -40.43 -0.40 -1.09 16 7 C -0.26 -3.43 6.45 -36.79 -0.24 -3.67 16 8 C 0.59 9.84 7.75 -12.89 -0.10 9.74 16 9 O -0.52 -10.96 16.51 5.19 0.09 -10.88 16 10 N -0.72 -11.15 5.08 -55.02 -0.28 -11.43 16 11 C 0.13 2.37 2.60 -67.81 -0.18 2.19 16 12 H 0.09 1.90 7.58 -51.93 -0.39 1.50 16 13 C -0.12 -1.87 5.35 -26.69 -0.14 -2.02 16 14 C -0.13 -2.47 6.10 -26.38 -0.16 -2.64 16 15 C 0.15 3.44 4.72 -3.48 -0.02 3.42 16 16 N -0.59 -15.34 2.83 -172.05 -0.49 -15.83 16 17 C -0.35 -10.05 9.48 -15.06 -0.14 -10.19 16 18 H 0.06 1.68 7.94 -52.49 -0.42 1.26 16 19 C -0.02 -0.69 4.69 -17.43 -0.08 -0.77 16 20 N -0.92 -27.74 12.45 55.49 0.69 -27.05 16 21 Si 1.07 25.94 29.98 -169.99 -5.10 20.84 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 C 0.14 3.23 6.09 -3.71 -0.02 3.21 16 26 S 0.19 1.89 22.10 -107.50 -2.38 -0.48 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.15 1.83 8.06 -52.48 -0.42 1.41 16 36 H 0.39 4.90 7.71 -40.82 -0.31 4.59 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.02 0.43 7.85 -51.93 -0.41 0.02 16 42 H 0.08 2.12 6.38 -51.93 -0.33 1.79 16 43 H 0.27 8.13 6.71 -40.82 -0.27 7.86 16 44 H 0.06 1.48 7.93 -51.93 -0.41 1.07 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 376.45 15.07 5.67 5.67 Total: -1.00 -33.23 376.45 -11.10 -44.33 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -7.27 Total: 2.17 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -2.05 Total: -7.34 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: -0.08 Total: -54.30 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.10 Total: 20.84 kcal Atomic # 16 Polarization: 1.89 SS G_CDS: -2.38 Total: -0.48 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.23 -11.10 -44.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007435851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.725 kcal (2) G-P(sol) polarization free energy of solvation -33.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds