Wall clock time and date at job start Tue Mar 31 2020 13:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47059 * 2 1 4 4 C 1.50701 * 109.47126 * 180.02562 * 3 2 1 5 5 C 1.33812 * 124.51893 * 90.00429 * 4 3 2 6 6 C 1.37478 * 115.09745 * 179.97438 * 5 4 3 7 7 C 1.36644 * 113.29645 * 359.97438 * 6 5 4 8 8 C 1.46591 * 125.45713 * 179.97438 * 7 6 5 9 9 O 1.21700 * 119.99582 * 0.02562 * 8 7 6 10 10 N 1.34776 * 119.99892 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99832 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.52390 * 35.07564 * 11 10 8 13 13 C 1.53041 * 109.49816 * 155.15979 * 11 10 8 14 14 C 1.53040 * 109.53848 * 181.31319 * 13 11 10 15 15 C 1.53630 * 109.24096 * 298.51216 * 14 13 11 16 16 N 1.46931 * 108.54020 * 54.85674 * 15 14 13 17 17 C 1.36940 * 120.62955 * 126.37085 * 16 15 14 18 18 H 1.07996 * 119.99881 * 209.02484 * 17 16 15 19 19 C 1.38810 * 120.00019 * 29.01976 * 17 16 15 20 20 N 1.31624 * 119.99803 * 24.34685 * 19 17 16 21 21 Si 1.86801 * 120.00199 * 204.34637 * 19 17 16 22 22 H 1.48499 * 109.47165 * 180.02562 * 21 19 17 23 23 H 1.48498 * 109.47155 * 59.99883 * 21 19 17 24 24 H 1.48506 * 109.46826 * 300.00225 * 21 19 17 25 25 C 1.46927 * 118.73904 * 306.08842 * 16 15 14 26 26 S 1.70614 * 124.52108 * 270.27361 * 4 3 2 27 27 H 1.09001 * 109.46862 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47048 * 299.99824 * 1 2 3 29 29 H 1.09002 * 109.47039 * 59.99873 * 1 2 3 30 30 H 1.08998 * 109.47242 * 240.00666 * 2 1 3 31 31 H 1.08996 * 109.47409 * 119.99960 * 2 1 3 32 32 H 1.09004 * 109.47160 * 59.99917 * 3 2 1 33 33 H 1.09004 * 109.47535 * 300.00454 * 3 2 1 34 34 H 1.08000 * 122.45653 * 359.93815 * 5 4 3 35 35 H 1.08005 * 123.35207 * 180.02562 * 6 5 4 36 36 H 0.96997 * 120.00161 * 359.97438 * 10 8 7 37 37 H 1.08994 * 109.46181 * 301.33810 * 13 11 10 38 38 H 1.09007 * 109.45788 * 61.30859 * 13 11 10 39 39 H 1.09003 * 109.49715 * 58.58491 * 14 13 11 40 40 H 1.08998 * 109.49520 * 178.68573 * 14 13 11 41 41 H 1.09000 * 109.74105 * 295.12179 * 15 14 13 42 42 H 1.09003 * 109.66306 * 174.54658 * 15 14 13 43 43 H 0.96995 * 120.00246 * 5.77739 * 20 19 17 44 44 H 1.09000 * 109.58078 * 173.64840 * 25 16 15 45 45 H 1.08997 * 109.58583 * 293.93686 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 6 4.3049 1.4428 -1.1035 6 6 5.6612 1.4433 -0.8790 7 6 5.9894 1.4440 0.4474 8 6 7.3528 1.4442 0.9861 9 8 8.3060 1.4441 0.2294 10 7 7.5506 1.4454 2.3192 11 6 8.9132 1.4461 2.8575 12 1 9.5608 2.0360 2.2089 13 6 8.9071 2.0535 4.2622 14 6 10.3348 2.0847 4.8125 15 6 10.8716 0.6485 4.9093 16 7 10.7474 0.0134 3.5902 17 6 11.8329 -0.5673 2.9905 18 1 11.8977 -0.6070 1.9132 19 6 12.8500 -1.1049 3.7672 20 7 12.6002 -1.4983 4.9982 21 14 14.5734 -1.2701 3.0655 22 1 15.4687 -1.8691 4.0877 23 1 15.0836 0.0715 2.6849 24 1 14.5376 -2.1447 1.8658 25 6 9.4350 0.0076 2.9297 26 16 4.5145 1.4356 1.4047 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9564 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.8820 1.4420 -2.0973 35 1 6.3943 1.4440 -1.6721 36 1 6.7909 1.4466 2.9223 37 1 8.5130 3.0687 4.2173 38 1 8.2791 1.4488 4.9166 39 1 10.9691 2.6686 4.1455 40 1 10.3329 2.5387 5.8034 41 1 10.2910 0.0870 5.6413 42 1 11.9197 0.6680 5.2083 43 1 11.6904 -1.4910 5.3345 44 1 9.5350 -0.3958 1.9220 45 1 8.7405 -0.6070 3.5022 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007435851.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:58 Heat of formation + Delta-G solvation = -26.556570 kcal Electronic energy + Delta-G solvation = -24475.679966 eV Core-core repulsion = 21004.479575 eV Total energy + Delta-G solvation = -3471.200391 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.15370 -39.46519 -38.76070 -36.23152 -35.77971 -34.31258 -32.32887 -31.62676 -30.30535 -27.74521 -27.13048 -24.97066 -24.10468 -23.77586 -22.34512 -22.20331 -21.34894 -20.14088 -19.45851 -18.96437 -17.45873 -16.94014 -16.45403 -16.39752 -15.94404 -15.91229 -15.72842 -15.48585 -15.15139 -14.92916 -14.64061 -14.40295 -14.29271 -14.05600 -13.69173 -13.55037 -13.36720 -13.03876 -12.76749 -12.63181 -12.51073 -12.37184 -12.07843 -11.98606 -11.95550 -11.90012 -11.86434 -11.74390 -11.52689 -11.29424 -11.20125 -10.67838 -10.29094 -9.69111 -9.56623 -8.97775 -8.30014 -5.48167 -0.56846 0.40472 0.84791 1.33664 1.54873 1.61997 1.82107 1.94755 2.10683 2.61839 3.16081 3.49291 3.63604 3.67780 3.83471 3.96121 4.05536 4.07566 4.15561 4.26523 4.29162 4.36539 4.39473 4.60947 4.64125 4.68554 4.71391 4.84329 4.85492 4.94132 4.96115 4.98158 5.02833 5.10287 5.14087 5.21486 5.23028 5.27621 5.28244 5.39891 5.45413 5.46529 5.78535 6.34416 6.37141 6.98817 7.05874 7.71326 8.12892 8.93626 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.022788 B = 0.002537 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.398381 B =11031.859065 C =11308.778341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.051 4.051 4 C -0.179 4.179 5 C -0.160 4.160 6 C -0.055 4.055 7 C -0.303 4.303 8 C 0.583 3.417 9 O -0.578 6.578 10 N -0.706 5.706 11 C 0.143 3.857 12 H 0.059 0.941 13 C -0.106 4.106 14 C -0.124 4.124 15 C 0.150 3.850 16 N -0.614 5.614 17 C -0.361 4.361 18 H 0.035 0.965 19 C -0.068 4.068 20 N -0.934 5.934 21 Si 1.114 2.886 22 H -0.284 1.284 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.147 3.853 26 S 0.239 5.761 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.167 0.833 35 H 0.142 0.858 36 H 0.410 0.590 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.050 0.950 40 H 0.093 0.907 41 H 0.016 0.984 42 H 0.046 0.954 43 H 0.256 0.744 44 H 0.024 0.976 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.142 9.248 -6.346 29.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.090 4.090 4 C -0.300 4.300 5 C -0.190 4.190 6 C -0.089 4.089 7 C -0.423 4.423 8 C 0.371 3.629 9 O -0.460 6.460 10 N -0.357 5.357 11 C 0.037 3.963 12 H 0.077 0.923 13 C -0.143 4.143 14 C -0.163 4.163 15 C 0.025 3.975 16 N -0.339 5.339 17 C -0.491 4.491 18 H 0.053 0.947 19 C -0.265 4.265 20 N -0.576 5.576 21 Si 0.938 3.062 22 H -0.209 1.209 23 H -0.206 1.206 24 H -0.206 1.206 25 C 0.020 3.980 26 S 0.508 5.492 27 H 0.076 0.924 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.184 0.816 35 H 0.160 0.840 36 H 0.246 0.754 37 H 0.110 0.890 38 H 0.098 0.902 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.034 0.966 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -25.205 8.796 -4.935 27.148 hybrid contribution -1.067 -0.038 -1.922 2.199 sum -26.272 8.758 -6.857 28.530 Atomic orbital electron populations 1.21765 0.94237 1.02257 1.02570 1.21571 0.96856 0.95130 1.02406 1.20405 0.84910 0.98577 1.05085 1.24681 1.02442 1.05661 0.97168 1.20089 0.91294 1.06581 1.01050 1.20939 0.97409 0.95747 0.94791 1.24439 0.96650 1.21897 0.99336 1.17479 0.87626 0.75385 0.82416 1.90829 1.43892 1.52199 1.59061 1.45771 1.09153 1.74709 1.06038 1.21297 0.81896 0.97113 0.96013 0.92279 1.21643 0.97702 1.01840 0.93162 1.22003 0.95810 0.96928 1.01603 1.21064 0.99026 0.91728 0.85705 1.44280 1.04962 1.64935 1.19763 1.20122 1.00888 1.36394 0.91673 0.94681 1.27220 1.07644 0.95013 0.96652 1.70900 1.22795 1.44903 1.18967 0.82880 0.71706 0.76932 0.74704 1.20900 1.20575 1.20637 1.21192 0.86958 0.94660 0.95195 1.82688 0.91961 1.67373 1.07208 0.92441 0.92047 0.91848 0.91869 0.92313 0.89274 0.88069 0.81572 0.83997 0.75372 0.88996 0.90208 0.93159 0.88903 0.96605 0.93504 0.93436 0.95684 0.96025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.91 71.98 0.71 -0.34 16 2 C -0.12 -1.13 5.92 30.60 0.18 -0.95 16 3 C -0.05 -0.45 5.65 29.85 0.17 -0.29 16 4 C -0.18 -2.65 5.53 24.68 0.14 -2.51 16 5 C -0.16 -2.73 9.99 21.08 0.21 -2.52 16 6 C -0.05 -1.30 10.01 21.72 0.22 -1.09 16 7 C -0.30 -7.99 6.45 24.08 0.16 -7.84 16 8 C 0.58 20.15 7.75 86.42 0.67 20.82 16 9 O -0.58 -25.77 16.51 -4.35 -0.07 -25.84 16 10 N -0.71 -21.66 5.08 -446.21 -2.27 -23.93 16 11 C 0.14 5.34 2.60 45.07 0.12 5.46 16 12 H 0.06 2.60 7.58 -2.39 -0.02 2.58 16 13 C -0.11 -3.16 5.35 30.62 0.16 -3.00 16 14 C -0.12 -4.41 6.10 30.82 0.19 -4.22 16 15 C 0.15 7.10 4.72 86.51 0.41 7.51 16 16 N -0.61 -32.91 2.83 -698.23 -1.98 -34.88 16 17 C -0.36 -21.84 9.48 84.03 0.80 -21.04 16 18 H 0.04 2.22 7.94 -2.91 -0.02 2.20 16 19 C -0.07 -4.06 4.69 84.86 0.40 -3.66 16 20 N -0.93 -57.98 12.45 21.65 0.27 -57.71 16 21 Si 1.11 53.41 29.98 68.60 2.06 55.47 16 22 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 25 C 0.15 6.86 6.09 86.36 0.53 7.39 16 26 S 0.24 4.11 22.10 -56.49 -1.25 2.86 16 27 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.10 0.64 8.14 -2.38 -0.02 0.63 16 34 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.14 3.58 8.06 -2.91 -0.02 3.55 16 36 H 0.41 9.48 7.71 -92.71 -0.72 8.77 16 37 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.02 0.75 7.85 -2.39 -0.02 0.73 16 42 H 0.05 2.52 6.38 -2.39 -0.02 2.50 16 43 H 0.26 16.06 6.71 -92.71 -0.62 15.43 16 44 H 0.02 1.30 7.93 -2.39 -0.02 1.28 16 45 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -76.98 376.45 2.23 -74.76 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.41 Total: 15.55 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 5.05 Total: -6.28 kcal Atomic # 7 Polarization: -112.55 SS G_CDS: -3.97 Total: -116.52 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.07 Total: -25.84 kcal Atomic # 14 Polarization: 53.41 SS G_CDS: 2.06 Total: 55.47 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.25 Total: 2.86 kcal Total: -76.98 2.23 -74.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007435851.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.202 kcal (2) G-P(sol) polarization free energy of solvation -76.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds