Wall clock time and date at job start Tue Mar 31 2020 13:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47278 * 2 1 4 4 C 1.50698 * 109.47024 * 120.00312 * 2 1 3 5 5 O 1.21279 * 120.00120 * 119.99965 * 4 2 1 6 6 N 1.34773 * 120.00146 * 299.99441 * 4 2 1 7 7 C 1.46500 * 120.00461 * 180.02562 * 6 4 2 8 8 H 1.09000 * 109.49564 * 34.93468 * 7 6 4 9 9 C 1.53045 * 109.49905 * 155.00073 * 7 6 4 10 10 C 1.53041 * 109.53333 * 181.35056 * 9 7 6 11 11 C 1.53194 * 109.31510 * 298.63138 * 10 9 7 12 12 N 1.46929 * 108.77452 * 54.63533 * 11 10 9 13 13 C 1.36936 * 120.62950 * 126.36836 * 12 11 10 14 14 H 1.07998 * 120.00244 * 332.51082 * 13 12 11 15 15 C 1.38814 * 120.00017 * 152.50689 * 13 12 11 16 16 N 1.31618 * 119.99798 * 335.02747 * 15 13 12 17 17 Si 1.86804 * 119.99785 * 155.02721 * 15 13 12 18 18 H 1.48497 * 109.47193 * 90.00159 * 17 15 13 19 19 H 1.48503 * 109.47075 * 329.99960 * 17 15 13 20 20 H 1.48503 * 109.46931 * 209.99997 * 17 15 13 21 21 C 1.46929 * 118.73892 * 306.64899 * 12 11 10 22 22 C 1.50702 * 109.46696 * 240.00092 * 2 1 3 23 23 C 1.33390 * 125.20687 * 60.00200 * 22 2 1 24 24 C 1.38418 * 114.92260 * 179.97438 * 23 22 2 25 25 C 1.33390 * 114.92157 * 359.97438 * 24 23 22 26 26 S 1.75884 * 109.59234 * 359.76017 * 25 24 23 27 27 H 1.09006 * 109.46632 * 300.00140 * 1 2 3 28 28 H 1.08997 * 109.47439 * 59.99697 * 1 2 3 29 29 H 1.08999 * 109.47648 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47528 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47670 * 300.00023 * 3 2 1 32 32 H 1.08997 * 109.47338 * 60.00053 * 3 2 1 33 33 H 0.97002 * 119.99693 * 0.02562 * 6 4 2 34 34 H 1.08997 * 109.46099 * 61.32791 * 9 7 6 35 35 H 1.08997 * 109.44359 * 301.35969 * 9 7 6 36 36 H 1.08998 * 109.49346 * 178.68162 * 10 9 7 37 37 H 1.09001 * 109.53060 * 58.60205 * 10 9 7 38 38 H 1.09008 * 109.58557 * 294.85414 * 11 10 9 39 39 H 1.08990 * 109.70809 * 174.49674 * 11 10 9 40 40 H 0.96992 * 120.00199 * 354.25811 * 16 15 13 41 41 H 1.09005 * 109.58534 * 173.14297 * 21 12 11 42 42 H 1.08999 * 109.58601 * 293.56296 * 21 12 11 43 43 H 1.07997 * 122.53580 * 359.95454 * 23 22 2 44 44 H 1.08003 * 122.54160 * 179.97438 * 24 23 22 45 45 H 1.07999 * 125.20591 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1955 -0.9403 3.6507 8 1 3.1944 -1.3334 3.4613 9 6 2.2471 0.0427 4.8226 10 6 2.7894 -0.6691 6.0641 11 6 1.8501 -1.8197 6.4393 12 7 1.6804 -2.6923 5.2693 13 6 1.9198 -4.0374 5.3616 14 1 2.6240 -4.4119 6.0897 15 6 1.2574 -4.9196 4.5191 16 7 0.0950 -4.5861 3.9996 17 14 2.0158 -6.5802 4.1229 18 1 1.5625 -7.5821 5.1208 19 1 3.4961 -6.4716 4.1676 20 1 1.5915 -7.0068 2.7652 21 6 1.2549 -2.0931 3.9970 22 6 2.0322 -0.7104 -1.2305 23 6 1.7747 -0.3463 -2.4877 24 6 2.3456 -1.1528 -3.4571 25 6 3.0671 -2.1715 -2.9872 26 16 3.0547 -2.1415 -1.2287 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.1489 0.5385 2.5435 34 1 1.2440 0.4165 5.0274 35 1 2.9007 0.8770 4.5678 36 1 2.8479 0.0374 6.8920 37 1 3.7828 -1.0647 5.8526 38 1 0.8821 -1.4182 6.7391 39 1 2.2794 -2.3912 7.2621 40 1 -0.3382 -3.7614 4.2696 41 1 1.2940 -2.8444 3.2082 42 1 0.2374 -1.7144 4.0936 43 1 1.1667 0.5125 -2.7307 44 1 2.2166 -0.9709 -4.5138 45 1 3.5837 -2.9006 -3.5938 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008185236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:06 Heat of formation + Delta-G solvation = 9.857344 kcal Electronic energy + Delta-G solvation = -26111.078975 eV Core-core repulsion = 22641.457610 eV Total energy + Delta-G solvation = -3469.621365 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.27166 -38.09218 -37.33462 -34.88436 -34.34818 -32.86952 -29.90697 -29.19604 -28.12825 -27.47805 -25.14029 -24.70201 -23.14880 -22.11581 -21.60823 -20.06020 -19.36535 -18.61423 -17.43813 -17.32371 -16.18361 -15.53266 -15.11916 -15.03888 -14.52294 -14.16838 -14.03685 -13.76023 -13.67808 -13.43430 -13.16676 -12.83815 -12.70145 -12.44000 -12.35435 -12.29797 -12.16227 -12.02487 -11.76454 -11.37034 -11.16228 -11.11056 -10.91920 -10.64733 -10.47120 -10.38108 -10.20230 -10.01703 -9.86503 -9.39593 -9.09717 -8.77048 -8.42198 -8.33040 -8.03244 -6.87304 -6.04479 -3.20998 1.27487 2.04199 2.52993 2.78253 2.96173 3.35984 3.53668 3.61589 3.75250 4.42482 4.61602 4.69000 4.92446 4.97361 5.19539 5.28484 5.30912 5.35504 5.40384 5.49048 5.53755 5.58202 5.58442 5.61185 5.72001 5.80307 5.90555 5.92745 6.00271 6.09965 6.14885 6.27851 6.30443 6.31241 6.51162 6.52331 6.64251 6.70385 6.71889 6.78089 6.99419 7.25114 7.69831 8.03551 8.39289 8.59891 9.12237 9.86507 10.28930 11.24033 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012631 B = 0.004780 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.237444 B = 5855.916802 C = 7363.284013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.010 4.010 3 C -0.132 4.132 4 C 0.517 3.483 5 O -0.512 6.512 6 N -0.712 5.712 7 C 0.122 3.878 8 H 0.086 0.914 9 C -0.115 4.115 10 C -0.131 4.131 11 C 0.144 3.856 12 N -0.594 5.594 13 C -0.354 4.354 14 H 0.056 0.944 15 C -0.018 4.018 16 N -0.911 5.911 17 Si 1.063 2.937 18 H -0.294 1.294 19 H -0.291 1.291 20 H -0.285 1.285 21 C 0.147 3.853 22 C -0.188 4.188 23 C -0.139 4.139 24 C -0.149 4.149 25 C -0.279 4.279 26 S 0.243 5.757 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.394 0.606 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.016 0.984 39 H 0.057 0.943 40 H 0.267 0.733 41 H 0.087 0.913 42 H 0.014 0.986 43 H 0.129 0.871 44 H 0.124 0.876 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.474 14.579 -9.116 17.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.015 4.015 3 C -0.190 4.190 4 C 0.302 3.698 5 O -0.389 6.389 6 N -0.362 5.362 7 C 0.016 3.984 8 H 0.104 0.896 9 C -0.154 4.154 10 C -0.171 4.171 11 C 0.018 3.982 12 N -0.318 5.318 13 C -0.483 4.483 14 H 0.074 0.926 15 C -0.220 4.220 16 N -0.551 5.551 17 Si 0.892 3.108 18 H -0.222 1.222 19 H -0.218 1.218 20 H -0.210 1.210 21 C 0.020 3.980 22 C -0.306 4.306 23 C -0.171 4.171 24 C -0.179 4.179 25 C -0.415 4.415 26 S 0.510 5.490 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.228 0.772 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.032 0.968 43 H 0.147 0.853 44 H 0.142 0.858 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 3.478 11.494 -8.951 14.977 hybrid contribution -0.794 2.725 -0.237 2.848 sum 2.685 14.219 -9.187 17.140 Atomic orbital electron populations 1.21875 0.91089 1.03649 1.02683 1.19217 0.97347 0.95545 0.89421 1.21856 1.01954 0.92443 1.02793 1.20395 0.80244 0.84390 0.84784 1.90463 1.38410 1.26021 1.84005 1.45992 1.53054 1.31456 1.05655 1.21799 1.00699 0.93674 0.82181 0.89585 1.21670 1.00839 0.97347 0.95508 1.21993 1.00662 0.98362 0.96049 1.20948 0.95401 0.91037 0.90796 1.44026 1.80568 1.04142 1.03089 1.19935 1.22225 0.81945 1.24164 0.92573 1.25815 0.94735 1.03044 0.98419 1.70764 1.12356 1.25797 1.46167 0.83588 0.75223 0.75243 0.76738 1.22182 1.21762 1.21031 1.21172 0.92920 0.93593 0.90361 1.24203 1.06977 1.02673 0.96772 1.19792 1.04014 1.02189 0.91080 1.19901 1.01448 0.96682 0.99898 1.26726 1.06554 1.03612 1.04573 1.85853 1.45098 1.23164 0.94920 0.91600 0.91145 0.91311 0.91823 0.91096 0.91651 0.77194 0.92237 0.92781 0.92460 0.91992 0.96589 0.92444 0.92181 0.89478 0.96790 0.85289 0.85820 0.83125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 8.23 37.16 0.31 -1.21 16 2 C -0.01 -0.13 0.76 -156.82 -0.12 -0.25 16 3 C -0.13 -1.28 8.23 37.15 0.31 -0.97 16 4 C 0.52 8.56 6.44 -10.99 -0.07 8.48 16 5 O -0.51 -10.59 12.51 5.56 0.07 -10.52 16 6 N -0.71 -10.78 4.87 -53.91 -0.26 -11.04 16 7 C 0.12 2.26 2.59 -68.03 -0.18 2.08 16 8 H 0.09 1.85 7.58 -51.93 -0.39 1.45 16 9 C -0.12 -1.76 5.36 -26.69 -0.14 -1.91 16 10 C -0.13 -2.17 6.08 -26.61 -0.16 -2.33 16 11 C 0.14 2.97 6.52 -3.71 -0.02 2.94 16 12 N -0.59 -14.93 2.86 -172.58 -0.49 -15.42 16 13 C -0.35 -10.06 9.49 -15.06 -0.14 -10.20 16 14 H 0.06 1.60 7.94 -52.49 -0.42 1.18 16 15 C -0.02 -0.51 4.69 -17.43 -0.08 -0.59 16 16 N -0.91 -27.84 12.41 55.49 0.69 -27.15 16 17 Si 1.06 26.38 29.99 -169.99 -5.10 21.28 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 21 C 0.15 3.44 4.24 -3.93 -0.02 3.42 16 22 C -0.19 -2.69 5.12 -36.00 -0.18 -2.88 16 23 C -0.14 -1.75 9.31 -41.21 -0.38 -2.14 16 24 C -0.15 -1.89 10.18 -41.21 -0.42 -2.31 16 25 C -0.28 -3.82 11.23 29.04 0.33 -3.50 16 26 S 0.24 3.99 19.58 -107.50 -2.11 1.88 16 27 H 0.07 0.63 7.56 -51.93 -0.39 0.24 16 28 H 0.07 0.65 7.94 -51.93 -0.41 0.23 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.57 7.94 -51.93 -0.41 0.16 16 32 H 0.06 0.51 7.56 -51.93 -0.39 0.12 16 33 H 0.39 4.59 7.44 -40.82 -0.30 4.29 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.33 8.14 -51.92 -0.42 -0.10 16 39 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 40 H 0.27 8.19 6.71 -40.82 -0.27 7.91 16 41 H 0.09 2.43 6.30 -51.93 -0.33 2.11 16 42 H 0.01 0.34 7.87 -51.93 -0.41 -0.07 16 43 H 0.13 1.31 8.01 -52.49 -0.42 0.88 16 44 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 45 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 365.89 15.07 5.51 5.51 Total: -1.00 -33.05 365.89 -9.84 -42.89 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -7.17 Total: 3.92 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -0.99 Total: -11.35 kcal Atomic # 7 Polarization: -53.55 SS G_CDS: -0.07 Total: -53.62 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.07 Total: -10.52 kcal Atomic # 14 Polarization: 26.38 SS G_CDS: -5.10 Total: 21.28 kcal Atomic # 16 Polarization: 3.99 SS G_CDS: -2.11 Total: 1.88 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.05 -9.84 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008185236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.745 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds