Wall clock time and date at job start Tue Mar 31 2020 13:30:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52993 * 109.47278 * 2 1 4 4 C 1.50698 * 109.47024 * 120.00312 * 2 1 3 5 5 O 1.21279 * 120.00120 * 119.99965 * 4 2 1 6 6 N 1.34773 * 120.00146 * 299.99441 * 4 2 1 7 7 C 1.46500 * 120.00461 * 180.02562 * 6 4 2 8 8 H 1.09000 * 109.49564 * 34.93468 * 7 6 4 9 9 C 1.53045 * 109.49905 * 155.00073 * 7 6 4 10 10 C 1.53041 * 109.53333 * 181.35056 * 9 7 6 11 11 C 1.53194 * 109.31510 * 298.63138 * 10 9 7 12 12 N 1.46929 * 108.77452 * 54.63533 * 11 10 9 13 13 C 1.36936 * 120.62950 * 126.36836 * 12 11 10 14 14 H 1.07998 * 120.00244 * 332.51082 * 13 12 11 15 15 C 1.38814 * 120.00017 * 152.50689 * 13 12 11 16 16 N 1.31618 * 119.99798 * 335.02747 * 15 13 12 17 17 Si 1.86804 * 119.99785 * 155.02721 * 15 13 12 18 18 H 1.48497 * 109.47193 * 90.00159 * 17 15 13 19 19 H 1.48503 * 109.47075 * 329.99960 * 17 15 13 20 20 H 1.48503 * 109.46931 * 209.99997 * 17 15 13 21 21 C 1.46929 * 118.73892 * 306.64899 * 12 11 10 22 22 C 1.50702 * 109.46696 * 240.00092 * 2 1 3 23 23 C 1.33390 * 125.20687 * 60.00200 * 22 2 1 24 24 C 1.38418 * 114.92260 * 179.97438 * 23 22 2 25 25 C 1.33390 * 114.92157 * 359.97438 * 24 23 22 26 26 S 1.75884 * 109.59234 * 359.76017 * 25 24 23 27 27 H 1.09006 * 109.46632 * 300.00140 * 1 2 3 28 28 H 1.08997 * 109.47439 * 59.99697 * 1 2 3 29 29 H 1.08999 * 109.47648 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47528 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.47670 * 300.00023 * 3 2 1 32 32 H 1.08997 * 109.47338 * 60.00053 * 3 2 1 33 33 H 0.97002 * 119.99693 * 0.02562 * 6 4 2 34 34 H 1.08997 * 109.46099 * 61.32791 * 9 7 6 35 35 H 1.08997 * 109.44359 * 301.35969 * 9 7 6 36 36 H 1.08998 * 109.49346 * 178.68162 * 10 9 7 37 37 H 1.09001 * 109.53060 * 58.60205 * 10 9 7 38 38 H 1.09008 * 109.58557 * 294.85414 * 11 10 9 39 39 H 1.08990 * 109.70809 * 174.49674 * 11 10 9 40 40 H 0.96992 * 120.00199 * 354.25811 * 16 15 13 41 41 H 1.09005 * 109.58534 * 173.14297 * 21 12 11 42 42 H 1.08999 * 109.58601 * 293.56296 * 21 12 11 43 43 H 1.07997 * 122.53580 * 359.95454 * 23 22 2 44 44 H 1.08003 * 122.54160 * 179.97438 * 24 23 22 45 45 H 1.07999 * 125.20591 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6965 1.1191 6 7 1.7068 -0.2500 2.4545 7 6 2.1955 -0.9403 3.6507 8 1 3.1944 -1.3334 3.4613 9 6 2.2471 0.0427 4.8226 10 6 2.7894 -0.6691 6.0641 11 6 1.8501 -1.8197 6.4393 12 7 1.6804 -2.6923 5.2693 13 6 1.9198 -4.0374 5.3616 14 1 2.6240 -4.4119 6.0897 15 6 1.2574 -4.9196 4.5191 16 7 0.0950 -4.5861 3.9996 17 14 2.0158 -6.5802 4.1229 18 1 1.5625 -7.5821 5.1208 19 1 3.4961 -6.4716 4.1676 20 1 1.5915 -7.0068 2.7652 21 6 1.2549 -2.0931 3.9970 22 6 2.0322 -0.7104 -1.2305 23 6 1.7747 -0.3463 -2.4877 24 6 2.3456 -1.1528 -3.4571 25 6 3.0671 -2.1715 -2.9872 26 16 3.0547 -2.1415 -1.2287 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.1489 0.5385 2.5435 34 1 1.2440 0.4165 5.0274 35 1 2.9007 0.8770 4.5678 36 1 2.8479 0.0374 6.8920 37 1 3.7828 -1.0647 5.8526 38 1 0.8821 -1.4182 6.7391 39 1 2.2794 -2.3912 7.2621 40 1 -0.3382 -3.7614 4.2696 41 1 1.2940 -2.8444 3.2082 42 1 0.2374 -1.7144 4.0936 43 1 1.1667 0.5125 -2.7307 44 1 2.2166 -0.9709 -4.5138 45 1 3.5837 -2.9006 -3.5938 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008185236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:05 Heat of formation + Delta-G solvation = -11.023456 kcal Electronic energy + Delta-G solvation = -26111.984434 eV Core-core repulsion = 22641.457610 eV Total energy + Delta-G solvation = -3470.526825 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.54563 -39.51060 -38.61942 -36.14205 -35.84903 -34.55785 -31.76414 -30.72619 -29.22870 -28.28321 -27.12342 -25.74681 -24.45894 -23.89434 -22.96676 -21.44164 -20.88567 -19.64349 -19.43498 -18.54414 -17.43586 -16.87526 -16.53641 -16.17018 -16.14603 -15.89839 -15.48528 -15.29493 -15.18161 -14.68080 -14.30806 -14.24748 -14.09086 -13.81440 -13.57019 -13.36412 -13.27043 -13.09642 -12.98146 -12.78372 -12.59249 -12.49749 -12.27749 -12.09213 -12.02530 -11.88516 -11.86456 -11.74109 -11.43080 -11.30315 -10.51109 -10.37377 -10.21824 -9.46915 -9.25461 -8.95268 -8.29063 -5.44146 0.21942 0.92730 1.42483 1.48098 1.53130 1.59611 1.74430 1.95585 2.12392 2.59592 3.18696 3.40690 3.53053 3.69518 3.83520 3.99769 4.01706 4.04702 4.13970 4.31738 4.32771 4.43176 4.61997 4.69079 4.69475 4.72527 4.76117 4.80202 4.82399 4.92762 4.97274 5.06010 5.09140 5.11069 5.15456 5.20028 5.25499 5.30149 5.38871 5.46921 5.53029 5.73836 5.79893 6.35080 6.48503 7.02064 7.19399 7.73629 8.16863 8.95389 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012631 B = 0.004780 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.237444 B = 5855.916802 C = 7363.284013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.003 4.003 3 C -0.127 4.127 4 C 0.505 3.495 5 O -0.559 6.559 6 N -0.699 5.699 7 C 0.137 3.863 8 H 0.050 0.950 9 C -0.105 4.105 10 C -0.122 4.122 11 C 0.137 3.863 12 N -0.617 5.617 13 C -0.358 4.358 14 H 0.050 0.950 15 C -0.070 4.070 16 N -0.938 5.938 17 Si 1.104 2.896 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.294 1.294 21 C 0.160 3.840 22 C -0.191 4.191 23 C -0.129 4.129 24 C -0.145 4.145 25 C -0.277 4.277 26 S 0.132 5.868 27 H 0.086 0.914 28 H 0.101 0.899 29 H 0.034 0.966 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.415 0.585 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.048 0.952 38 H 0.024 0.976 39 H 0.050 0.950 40 H 0.254 0.746 41 H 0.032 0.968 42 H 0.007 0.993 43 H 0.167 0.833 44 H 0.156 0.844 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.062 18.266 -9.890 20.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.008 4.008 3 C -0.185 4.185 4 C 0.292 3.708 5 O -0.440 6.440 6 N -0.350 5.350 7 C 0.031 3.969 8 H 0.069 0.931 9 C -0.143 4.143 10 C -0.161 4.161 11 C 0.012 3.988 12 N -0.342 5.342 13 C -0.488 4.488 14 H 0.068 0.932 15 C -0.267 4.267 16 N -0.580 5.580 17 Si 0.929 3.071 18 H -0.199 1.199 19 H -0.206 1.206 20 H -0.221 1.221 21 C 0.033 3.967 22 C -0.309 4.309 23 C -0.160 4.160 24 C -0.175 4.175 25 C -0.412 4.412 26 S 0.398 5.602 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.108 0.892 33 H 0.253 0.747 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.066 0.934 38 H 0.042 0.958 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.025 0.975 43 H 0.184 0.816 44 H 0.174 0.826 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.057 15.247 -9.701 18.328 hybrid contribution -0.677 1.599 -0.030 1.737 sum 2.380 16.846 -9.731 19.600 Atomic orbital electron populations 1.21923 0.89635 1.02231 1.05264 1.19314 0.98178 0.96762 0.86549 1.21901 1.01242 0.90027 1.05351 1.21285 0.79456 0.83946 0.86155 1.90491 1.40350 1.28147 1.84964 1.45761 1.53124 1.31677 1.04430 1.21287 0.97218 0.93483 0.84916 0.93133 1.21643 1.02852 0.96940 0.92901 1.21891 0.98542 0.97529 0.98133 1.21169 0.96785 0.91753 0.89049 1.44284 1.80862 1.03834 1.05201 1.20184 1.21166 0.83967 1.23470 0.93176 1.26997 0.94752 1.06092 0.98849 1.70863 1.13676 1.25716 1.47733 0.83032 0.75110 0.72572 0.76396 1.19870 1.20639 1.22086 1.20913 0.93742 0.93761 0.88281 1.24392 1.06835 1.01398 0.98308 1.20203 1.03115 1.02658 0.89974 1.20351 0.99938 0.95614 1.01569 1.26773 1.07496 1.04798 1.02145 1.86264 1.48357 1.26969 0.98644 0.89561 0.88057 0.94690 0.93045 0.88425 0.89232 0.74693 0.90260 0.89099 0.88212 0.93358 0.95783 0.93178 0.93616 0.94983 0.97526 0.81559 0.82630 0.81674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 8.23 71.98 0.59 -2.09 16 2 C 0.00 -0.07 0.76 -53.68 -0.04 -0.11 16 3 C -0.13 -2.00 8.23 71.98 0.59 -1.41 16 4 C 0.50 17.04 6.44 87.66 0.56 17.61 16 5 O -0.56 -24.89 12.51 -3.03 -0.04 -24.93 16 6 N -0.70 -20.71 4.87 -442.85 -2.16 -22.87 16 7 C 0.14 5.13 2.59 44.93 0.12 5.25 16 8 H 0.05 2.27 7.58 -2.39 -0.02 2.25 16 9 C -0.11 -2.91 5.36 30.62 0.16 -2.75 16 10 C -0.12 -3.73 6.08 30.67 0.19 -3.54 16 11 C 0.14 5.57 6.52 86.36 0.56 6.14 16 12 N -0.62 -31.97 2.86 -699.91 -2.00 -33.97 16 13 C -0.36 -21.17 9.49 84.03 0.80 -20.38 16 14 H 0.05 2.95 7.94 -2.91 -0.02 2.93 16 15 C -0.07 -4.24 4.69 84.86 0.40 -3.84 16 16 N -0.94 -60.25 12.41 21.65 0.27 -59.98 16 17 Si 1.10 55.42 29.99 68.60 2.06 57.48 16 18 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 20 H -0.29 -15.14 7.11 99.48 0.71 -14.44 16 21 C 0.16 7.83 4.24 86.22 0.37 8.20 16 22 C -0.19 -5.35 5.12 24.59 0.13 -5.23 16 23 C -0.13 -2.87 9.31 21.22 0.20 -2.67 16 24 C -0.14 -3.31 10.18 21.22 0.22 -3.10 16 25 C -0.28 -7.54 11.23 66.72 0.75 -6.79 16 26 S 0.13 4.63 19.58 -56.49 -1.11 3.52 16 27 H 0.09 1.37 7.56 -2.38 -0.02 1.36 16 28 H 0.10 1.43 7.94 -2.39 -0.02 1.41 16 29 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 1.05 7.94 -2.39 -0.02 1.04 16 32 H 0.09 0.98 7.56 -2.39 -0.02 0.96 16 33 H 0.42 8.55 7.44 -92.71 -0.69 7.86 16 34 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 40 H 0.25 16.43 6.71 -92.71 -0.62 15.81 16 41 H 0.03 1.91 6.30 -2.38 -0.02 1.89 16 42 H 0.01 0.34 7.87 -2.39 -0.02 0.32 16 43 H 0.17 2.47 8.01 -2.91 -0.02 2.45 16 44 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 45 H 0.17 3.84 8.06 -2.91 -0.02 3.81 16 Total: -1.00 -80.38 365.89 3.05 -77.33 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.43 Total: 18.14 kcal Atomic # 6 Polarization: -20.31 SS G_CDS: 5.59 Total: -14.73 kcal Atomic # 7 Polarization: -112.93 SS G_CDS: -3.89 Total: -116.82 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.04 Total: -24.93 kcal Atomic # 14 Polarization: 55.42 SS G_CDS: 2.06 Total: 57.48 kcal Atomic # 16 Polarization: 4.63 SS G_CDS: -1.11 Total: 3.52 kcal Total: -80.38 3.05 -77.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008185236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.310 kcal (2) G-P(sol) polarization free energy of solvation -80.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds