Wall clock time and date at job start Tue Mar 31 2020 13:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47451 * 2 1 4 4 S 1.70618 * 124.52310 * 269.70630 * 3 2 1 5 5 C 1.75836 * 91.56016 * 179.97438 * 4 3 2 6 6 C 1.46584 * 125.45471 * 180.02562 * 5 4 3 7 7 O 1.21701 * 119.99659 * 180.33370 * 6 5 4 8 8 N 1.34778 * 120.00058 * 0.33166 * 6 5 4 9 9 C 1.46500 * 119.99840 * 180.02562 * 8 6 5 10 10 H 1.08995 * 109.49968 * 325.00206 * 9 8 6 11 11 C 1.53041 * 109.49652 * 204.93343 * 9 8 6 12 12 C 1.53039 * 109.53639 * 178.71521 * 11 9 8 13 13 C 1.53190 * 109.33916 * 61.32382 * 12 11 9 14 14 N 1.46927 * 108.77164 * 305.37565 * 13 12 11 15 15 C 1.36944 * 120.62954 * 233.58831 * 14 13 12 16 16 H 1.08004 * 119.99845 * 27.70061 * 15 14 13 17 17 C 1.38809 * 119.99945 * 207.69443 * 15 14 13 18 18 N 1.31625 * 120.00078 * 17.36277 * 17 15 14 19 19 Si 1.86801 * 119.99966 * 197.35691 * 17 15 14 20 20 H 1.48505 * 109.47020 * 90.00535 * 19 17 15 21 21 H 1.48496 * 109.46963 * 210.00183 * 19 17 15 22 22 H 1.48497 * 109.47410 * 330.00324 * 19 17 15 23 23 C 1.46921 * 118.73927 * 53.61263 * 14 13 12 24 24 C 1.36646 * 109.08204 * 0.33527 * 5 4 3 25 25 C 1.33820 * 124.52152 * 89.99882 * 3 2 1 26 26 C 1.50697 * 122.44749 * 359.97438 * 25 3 2 27 27 H 1.09002 * 109.46480 * 299.99712 * 1 2 3 28 28 H 1.08991 * 109.47502 * 59.99540 * 1 2 3 29 29 H 1.09000 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47524 * 120.00510 * 2 1 3 31 31 H 1.09000 * 109.46912 * 240.00582 * 2 1 3 32 32 H 0.96998 * 119.99834 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.46182 * 298.70713 * 11 9 8 34 34 H 1.09001 * 109.45945 * 58.66329 * 11 9 8 35 35 H 1.08994 * 109.46969 * 301.36382 * 12 11 9 36 36 H 1.09004 * 109.51984 * 181.30110 * 12 11 9 37 37 H 1.09006 * 109.58332 * 185.59555 * 13 12 11 38 38 H 1.08994 * 109.59423 * 65.16243 * 13 12 11 39 39 H 0.96995 * 120.00158 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.58716 * 186.60420 * 23 14 13 41 41 H 1.08996 * 109.70856 * 66.24999 * 23 14 13 42 42 H 1.08004 * 123.34463 * 179.70844 * 24 5 4 43 43 H 1.08991 * 109.47669 * 89.99551 * 26 25 3 44 44 H 1.09004 * 109.47019 * 209.99766 * 26 25 3 45 45 H 1.09003 * 109.47170 * 329.99097 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3616 2.3300 -1.4057 5 6 2.8481 3.7228 -0.4490 6 6 3.3043 5.0073 -0.9882 7 8 3.6238 5.9056 -0.2319 8 7 3.3699 5.1934 -2.3214 9 6 3.8263 6.4770 -2.8603 10 1 3.4886 7.2848 -2.2112 11 6 3.2507 6.6752 -4.2644 12 6 3.7009 8.0301 -4.8154 13 6 5.2296 8.0564 -4.9109 14 7 5.7913 7.7236 -3.5946 15 6 6.7031 8.5513 -2.9956 16 1 6.6975 9.6090 -3.2142 17 6 7.6344 8.0310 -2.1075 18 7 7.8772 6.7375 -2.0913 19 14 8.5431 9.1666 -0.9353 20 1 7.7749 9.2901 0.3296 21 1 9.8872 8.6059 -0.6454 22 1 8.6897 10.5066 -1.5583 23 6 5.3565 6.4857 -2.9335 24 6 2.7393 3.4136 0.8776 25 6 2.2852 2.1358 1.1026 26 6 2.0881 1.5802 2.4894 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8898 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 3.1155 4.4772 -2.9242 33 1 3.6083 5.8804 -4.9190 34 1 2.1621 6.6450 -4.2181 35 1 3.3642 8.8236 -4.1484 36 1 3.2719 8.1811 -5.8061 37 1 5.5601 9.0517 -5.2081 38 1 5.5626 7.3238 -5.6460 39 1 8.5282 6.3739 -1.4710 40 1 5.7707 6.4445 -1.9261 41 1 5.6999 5.6235 -3.5052 42 1 2.9854 4.1046 1.6703 43 1 3.0092 1.1032 2.8241 44 1 1.8295 2.3898 3.1719 45 1 1.2829 0.8456 2.4755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009437376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:14 Heat of formation + Delta-G solvation = -1.849979 kcal Electronic energy + Delta-G solvation = -25046.457590 eV Core-core repulsion = 21576.328557 eV Total energy + Delta-G solvation = -3470.129033 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.60852 -38.57248 -37.17804 -34.11646 -33.93765 -32.65823 -30.62612 -29.98982 -28.91252 -27.48631 -25.24736 -24.74699 -22.68548 -22.16529 -21.65821 -20.22459 -19.45680 -18.56448 -17.77449 -16.74560 -16.31265 -15.49660 -15.07960 -14.64012 -14.58965 -14.45820 -14.10278 -13.89387 -13.62623 -13.47463 -13.21160 -12.99298 -12.81898 -12.42607 -12.39485 -12.29550 -12.25981 -11.86991 -11.76017 -11.52584 -11.35392 -10.99566 -10.86315 -10.74493 -10.70259 -10.46872 -10.22034 -9.99476 -9.91662 -9.55475 -9.47885 -8.71842 -8.55190 -8.39898 -8.38821 -6.63525 -5.72381 -3.15847 0.53780 1.43803 1.85474 2.36340 3.43059 3.48141 3.52508 3.53308 3.57654 4.45111 4.56859 4.71899 4.88987 4.96444 5.11534 5.16423 5.26857 5.37048 5.42239 5.46509 5.52402 5.52803 5.55929 5.64376 5.66231 5.69624 5.75092 5.88504 5.94407 6.09185 6.15471 6.25080 6.35447 6.40528 6.43672 6.50294 6.70931 6.78126 6.91619 6.97867 7.31447 7.75442 7.84253 7.90165 8.50343 8.58464 9.25756 9.89906 10.44580 11.35556 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016205 B = 0.003419 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.448111 B = 8186.571881 C = 9364.224118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.053 4.053 3 C -0.203 4.203 4 S 0.190 5.810 5 C -0.249 4.249 6 C 0.584 3.416 7 O -0.520 6.520 8 N -0.715 5.715 9 C 0.118 3.882 10 H 0.084 0.916 11 C -0.116 4.116 12 C -0.130 4.130 13 C 0.142 3.858 14 N -0.588 5.588 15 C -0.257 4.257 16 H 0.067 0.933 17 C 0.006 3.994 18 N -0.899 5.899 19 Si 0.902 3.098 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.279 1.279 23 C 0.167 3.833 24 C -0.057 4.057 25 C -0.118 4.118 26 C -0.093 4.093 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.389 0.611 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.018 0.982 39 H 0.253 0.747 40 H 0.095 0.905 41 H 0.017 0.983 42 H 0.152 0.848 43 H 0.069 0.931 44 H 0.067 0.933 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.101 -14.446 1.773 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.092 4.092 3 C -0.323 4.323 4 S 0.459 5.541 5 C -0.369 4.369 6 C 0.369 3.631 7 O -0.397 6.397 8 N -0.365 5.365 9 C 0.013 3.987 10 H 0.102 0.898 11 C -0.155 4.155 12 C -0.170 4.170 13 C 0.016 3.984 14 N -0.311 5.311 15 C -0.386 4.386 16 H 0.085 0.915 17 C -0.193 4.193 18 N -0.542 5.542 19 Si 0.732 3.268 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.204 1.204 23 C 0.039 3.961 24 C -0.090 4.090 25 C -0.131 4.131 26 C -0.152 4.152 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.222 0.778 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.113 0.887 41 H 0.035 0.965 42 H 0.170 0.830 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.802 -14.127 0.802 21.211 hybrid contribution 0.524 0.357 1.868 1.973 sum -15.278 -13.769 2.670 20.740 Atomic orbital electron populations 1.21789 0.94259 1.01934 1.02593 1.20102 0.96189 0.89568 1.03350 1.23970 1.08947 1.02011 0.97350 1.82846 1.60508 1.02873 1.07837 1.24701 1.14971 0.99299 0.97933 1.16910 0.78014 0.85470 0.82704 1.90872 1.48466 1.42500 1.57867 1.45965 1.67571 1.17224 1.05783 1.22031 0.99276 0.83749 0.93685 0.89770 1.21684 0.98959 0.98775 0.96050 1.22000 0.99314 0.96214 0.99499 1.20963 0.90431 0.98600 0.88445 1.43967 1.47721 1.24322 1.15079 1.19157 1.07677 0.89585 1.22216 0.91540 1.25039 0.96971 0.95895 1.01383 1.70018 1.35213 1.11226 1.37779 0.86293 0.78710 0.80085 0.81695 1.21238 1.21788 1.20422 1.21091 0.86859 0.87731 1.00374 1.20619 0.97132 0.95787 0.95427 1.18633 1.04075 0.93961 0.96411 1.20506 1.01974 1.00955 0.91726 0.92222 0.92382 0.92028 0.89895 0.90743 0.77810 0.92221 0.93026 0.92075 0.92567 0.92572 0.96379 0.93654 0.88661 0.96455 0.83042 0.91233 0.91365 0.91572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.90 37.16 0.37 -0.60 16 2 C -0.05 -0.40 5.72 -27.88 -0.16 -0.56 16 3 C -0.20 -2.16 5.53 -35.86 -0.20 -2.36 16 4 S 0.19 2.20 22.10 -107.50 -2.38 -0.18 16 5 C -0.25 -3.86 6.45 -36.79 -0.24 -4.10 16 6 C 0.58 11.24 7.75 -12.89 -0.10 11.14 16 7 O -0.52 -12.28 16.50 5.19 0.09 -12.20 16 8 N -0.72 -12.64 5.08 -55.03 -0.28 -12.92 16 9 C 0.12 2.38 2.60 -67.81 -0.18 2.20 16 10 H 0.08 1.92 7.58 -51.93 -0.39 1.53 16 11 C -0.12 -1.93 5.36 -26.69 -0.14 -2.07 16 12 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 13 C 0.14 2.98 6.52 -3.71 -0.02 2.96 16 14 N -0.59 -15.21 2.99 -172.32 -0.52 -15.73 16 15 C -0.26 -7.32 9.59 -15.06 -0.14 -7.47 16 16 H 0.07 1.85 7.89 -52.48 -0.41 1.44 16 17 C 0.01 0.18 4.91 -17.43 -0.09 0.10 16 18 N -0.90 -27.28 11.19 55.49 0.62 -26.66 16 19 Si 0.90 22.87 29.59 -169.99 -5.03 17.84 16 20 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.17 4.17 4.89 -3.71 -0.02 4.15 16 24 C -0.06 -0.81 9.80 -40.44 -0.40 -1.21 16 25 C -0.12 -1.36 5.78 -106.46 -0.62 -1.97 16 26 C -0.09 -0.80 9.55 36.00 0.34 -0.45 16 27 H 0.06 0.41 7.80 -51.93 -0.41 0.00 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.56 7.25 -51.93 -0.38 0.18 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.39 5.63 7.72 -40.82 -0.31 5.31 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 40 H 0.10 2.81 6.04 -51.93 -0.31 2.50 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.15 2.19 8.06 -52.48 -0.42 1.76 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 45 H 0.07 0.46 6.86 -51.93 -0.36 0.11 16 LS Contribution 374.16 15.07 5.64 5.64 Total: -1.00 -33.59 374.16 -10.80 -44.39 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -7.19 Total: 2.45 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: -1.75 Total: -2.65 kcal Atomic # 7 Polarization: -55.13 SS G_CDS: -0.17 Total: -55.30 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.03 Total: 17.84 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.38 Total: -0.18 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.59 -10.80 -44.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009437376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.542 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds