Wall clock time and date at job start Tue Mar 31 2020 13:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47451 * 2 1 4 4 S 1.70618 * 124.52310 * 269.70630 * 3 2 1 5 5 C 1.75836 * 91.56016 * 179.97438 * 4 3 2 6 6 C 1.46584 * 125.45471 * 180.02562 * 5 4 3 7 7 O 1.21701 * 119.99659 * 180.33370 * 6 5 4 8 8 N 1.34778 * 120.00058 * 0.33166 * 6 5 4 9 9 C 1.46500 * 119.99840 * 180.02562 * 8 6 5 10 10 H 1.08995 * 109.49968 * 325.00206 * 9 8 6 11 11 C 1.53041 * 109.49652 * 204.93343 * 9 8 6 12 12 C 1.53039 * 109.53639 * 178.71521 * 11 9 8 13 13 C 1.53190 * 109.33916 * 61.32382 * 12 11 9 14 14 N 1.46927 * 108.77164 * 305.37565 * 13 12 11 15 15 C 1.36944 * 120.62954 * 233.58831 * 14 13 12 16 16 H 1.08004 * 119.99845 * 27.70061 * 15 14 13 17 17 C 1.38809 * 119.99945 * 207.69443 * 15 14 13 18 18 N 1.31625 * 120.00078 * 17.36277 * 17 15 14 19 19 Si 1.86801 * 119.99966 * 197.35691 * 17 15 14 20 20 H 1.48505 * 109.47020 * 90.00535 * 19 17 15 21 21 H 1.48496 * 109.46963 * 210.00183 * 19 17 15 22 22 H 1.48497 * 109.47410 * 330.00324 * 19 17 15 23 23 C 1.46921 * 118.73927 * 53.61263 * 14 13 12 24 24 C 1.36646 * 109.08204 * 0.33527 * 5 4 3 25 25 C 1.33820 * 124.52152 * 89.99882 * 3 2 1 26 26 C 1.50697 * 122.44749 * 359.97438 * 25 3 2 27 27 H 1.09002 * 109.46480 * 299.99712 * 1 2 3 28 28 H 1.08991 * 109.47502 * 59.99540 * 1 2 3 29 29 H 1.09000 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47524 * 120.00510 * 2 1 3 31 31 H 1.09000 * 109.46912 * 240.00582 * 2 1 3 32 32 H 0.96998 * 119.99834 * 359.97438 * 8 6 5 33 33 H 1.09001 * 109.46182 * 298.70713 * 11 9 8 34 34 H 1.09001 * 109.45945 * 58.66329 * 11 9 8 35 35 H 1.08994 * 109.46969 * 301.36382 * 12 11 9 36 36 H 1.09004 * 109.51984 * 181.30110 * 12 11 9 37 37 H 1.09006 * 109.58332 * 185.59555 * 13 12 11 38 38 H 1.08994 * 109.59423 * 65.16243 * 13 12 11 39 39 H 0.96995 * 120.00158 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.58716 * 186.60420 * 23 14 13 41 41 H 1.08996 * 109.70856 * 66.24999 * 23 14 13 42 42 H 1.08004 * 123.34463 * 179.70844 * 24 5 4 43 43 H 1.08991 * 109.47669 * 89.99551 * 26 25 3 44 44 H 1.09004 * 109.47019 * 209.99766 * 26 25 3 45 45 H 1.09003 * 109.47170 * 329.99097 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 16 2.3616 2.3300 -1.4057 5 6 2.8481 3.7228 -0.4490 6 6 3.3043 5.0073 -0.9882 7 8 3.6238 5.9056 -0.2319 8 7 3.3699 5.1934 -2.3214 9 6 3.8263 6.4770 -2.8603 10 1 3.4886 7.2848 -2.2112 11 6 3.2507 6.6752 -4.2644 12 6 3.7009 8.0301 -4.8154 13 6 5.2296 8.0564 -4.9109 14 7 5.7913 7.7236 -3.5946 15 6 6.7031 8.5513 -2.9956 16 1 6.6975 9.6090 -3.2142 17 6 7.6344 8.0310 -2.1075 18 7 7.8772 6.7375 -2.0913 19 14 8.5431 9.1666 -0.9353 20 1 7.7749 9.2901 0.3296 21 1 9.8872 8.6059 -0.6454 22 1 8.6897 10.5066 -1.5583 23 6 5.3565 6.4857 -2.9335 24 6 2.7393 3.4136 0.8776 25 6 2.2852 2.1358 1.1026 26 6 2.0881 1.5802 2.4894 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8898 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 3.1155 4.4772 -2.9242 33 1 3.6083 5.8804 -4.9190 34 1 2.1621 6.6450 -4.2181 35 1 3.3642 8.8236 -4.1484 36 1 3.2719 8.1811 -5.8061 37 1 5.5601 9.0517 -5.2081 38 1 5.5626 7.3238 -5.6460 39 1 8.5282 6.3739 -1.4710 40 1 5.7707 6.4445 -1.9261 41 1 5.6999 5.6235 -3.5052 42 1 2.9854 4.1046 1.6703 43 1 3.0092 1.1032 2.8241 44 1 1.8295 2.3898 3.1719 45 1 1.2829 0.8456 2.4755 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009437376.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:13 Heat of formation + Delta-G solvation = -22.870460 kcal Electronic energy + Delta-G solvation = -25047.369106 eV Core-core repulsion = 21576.328557 eV Total energy + Delta-G solvation = -3471.040549 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.08044 -39.67137 -38.81131 -35.88669 -34.75116 -34.45971 -32.02333 -31.54487 -30.38112 -28.31662 -27.27893 -25.88724 -23.99175 -23.59132 -23.02455 -21.69853 -21.03749 -19.66240 -18.96865 -18.72552 -17.55956 -16.94353 -16.83253 -16.13410 -15.90612 -15.62002 -15.34774 -15.24290 -15.11510 -14.79709 -14.56333 -14.21858 -14.08971 -14.01673 -13.53807 -13.45463 -13.14417 -13.02167 -12.96225 -12.72920 -12.68178 -12.50921 -12.30317 -12.22377 -12.06972 -12.06042 -11.72803 -11.66145 -11.65013 -11.31152 -11.11631 -10.59421 -10.26379 -9.66545 -9.34156 -8.72852 -7.91791 -5.37710 -0.54502 0.42795 0.87315 1.30890 1.38511 1.44501 1.50182 2.01638 2.16963 2.47154 3.24434 3.62516 3.71364 3.80307 3.94383 4.09169 4.10064 4.18356 4.22741 4.41382 4.44565 4.45112 4.49733 4.56525 4.78596 4.81590 4.84768 4.87526 4.89364 5.00772 5.06437 5.06651 5.13300 5.17320 5.17747 5.27831 5.31217 5.35864 5.41629 5.50179 5.53839 5.59178 5.72159 6.32632 6.45375 7.07369 7.14097 7.81895 8.31140 9.13080 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016205 B = 0.003419 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.448111 B = 8186.571881 C = 9364.224118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.055 4.055 3 C -0.186 4.186 4 S 0.238 5.762 5 C -0.299 4.299 6 C 0.580 3.420 7 O -0.580 6.580 8 N -0.704 5.704 9 C 0.131 3.869 10 H 0.053 0.947 11 C -0.108 4.108 12 C -0.121 4.121 13 C 0.134 3.866 14 N -0.609 5.609 15 C -0.264 4.264 16 H 0.070 0.930 17 C -0.052 4.052 18 N -0.931 5.931 19 Si 0.962 3.038 20 H -0.296 1.296 21 H -0.290 1.290 22 H -0.260 1.260 23 C 0.180 3.820 24 C -0.057 4.057 25 C -0.133 4.133 26 C -0.091 4.091 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.407 0.593 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.052 0.948 36 H 0.101 0.899 37 H 0.057 0.943 38 H 0.023 0.977 39 H 0.247 0.753 40 H 0.042 0.958 41 H 0.000 1.000 42 H 0.136 0.864 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.454 -16.360 0.572 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.095 4.095 3 C -0.306 4.306 4 S 0.508 5.492 5 C -0.419 4.419 6 C 0.368 3.632 7 O -0.462 6.462 8 N -0.355 5.355 9 C 0.025 3.975 10 H 0.072 0.928 11 C -0.146 4.146 12 C -0.160 4.160 13 C 0.010 3.990 14 N -0.333 5.333 15 C -0.394 4.394 16 H 0.088 0.912 17 C -0.248 4.248 18 N -0.577 5.577 19 Si 0.791 3.209 20 H -0.223 1.223 21 H -0.217 1.217 22 H -0.184 1.184 23 C 0.052 3.948 24 C -0.092 4.092 25 C -0.145 4.145 26 C -0.149 4.149 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.243 0.757 33 H 0.094 0.906 34 H 0.105 0.895 35 H 0.070 0.930 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.041 0.959 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.018 0.982 42 H 0.154 0.846 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.190 -16.054 -0.465 24.265 hybrid contribution 1.205 0.849 2.211 2.657 sum -16.985 -15.204 1.746 22.863 Atomic orbital electron populations 1.21794 0.93105 1.03215 1.02324 1.20316 0.97016 0.87278 1.04841 1.24538 1.06306 1.03208 0.96553 1.82551 1.59165 1.00292 1.07157 1.24413 1.18488 0.99622 0.99332 1.17482 0.76823 0.86275 0.82645 1.90822 1.51228 1.44942 1.59171 1.45771 1.66898 1.17009 1.05824 1.21607 0.95957 0.84069 0.95911 0.92836 1.21670 1.00865 0.99039 0.93004 1.21902 0.96043 0.96214 1.01824 1.21206 0.93126 0.98665 0.86031 1.44254 1.47825 1.24023 1.17227 1.19525 1.07548 0.90257 1.22108 0.91189 1.25819 0.98495 0.97238 1.03228 1.70175 1.36099 1.12881 1.38521 0.85332 0.77213 0.79232 0.79157 1.22325 1.21680 1.18367 1.20757 0.89953 0.87100 0.96958 1.20789 0.96611 0.96960 0.94817 1.18813 1.04479 0.92855 0.98367 1.20569 1.03111 1.01428 0.89825 0.92404 0.92821 0.90020 0.88238 0.89467 0.75678 0.90572 0.89497 0.92957 0.88103 0.92404 0.95875 0.94441 0.93973 0.98189 0.84589 0.90569 0.91349 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.90 71.98 0.71 -0.67 16 2 C -0.06 -0.64 5.72 29.85 0.17 -0.47 16 3 C -0.19 -3.51 5.53 24.68 0.14 -3.38 16 4 S 0.24 5.14 22.10 -56.49 -1.25 3.89 16 5 C -0.30 -9.55 6.45 24.08 0.16 -9.39 16 6 C 0.58 23.61 7.75 86.42 0.67 24.27 16 7 O -0.58 -29.74 16.50 -4.35 -0.07 -29.81 16 8 N -0.70 -25.45 5.08 -446.22 -2.26 -27.72 16 9 C 0.13 5.40 2.60 45.07 0.12 5.52 16 10 H 0.05 2.56 7.58 -2.39 -0.02 2.54 16 11 C -0.11 -3.31 5.36 30.62 0.16 -3.15 16 12 C -0.12 -3.82 6.08 30.67 0.19 -3.64 16 13 C 0.13 5.54 6.52 86.36 0.56 6.11 16 14 N -0.61 -32.36 2.99 -699.10 -2.09 -34.46 16 15 C -0.26 -15.51 9.59 84.03 0.81 -14.70 16 16 H 0.07 3.96 7.89 -2.91 -0.02 3.94 16 17 C -0.05 -3.16 4.91 84.86 0.42 -2.74 16 18 N -0.93 -59.43 11.19 21.65 0.24 -59.19 16 19 Si 0.96 48.78 29.59 68.60 2.03 50.81 16 20 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 21 H -0.29 -14.53 7.11 99.48 0.71 -13.83 16 22 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 23 C 0.18 9.42 4.89 86.36 0.42 9.84 16 24 C -0.06 -1.70 9.80 21.71 0.21 -1.49 16 25 C -0.13 -2.92 5.78 -21.05 -0.12 -3.04 16 26 C -0.09 -1.39 9.55 71.24 0.68 -0.71 16 27 H 0.06 0.59 7.80 -2.39 -0.02 0.57 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 0.90 7.25 -2.39 -0.02 0.89 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.41 11.49 7.72 -92.71 -0.72 10.78 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.06 2.32 7.93 -2.38 -0.02 2.30 16 38 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 40 H 0.04 2.66 6.04 -2.39 -0.01 2.64 16 41 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 42 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 43 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.07 1.04 8.13 -2.38 -0.02 1.02 16 45 H 0.09 0.95 6.86 -2.39 -0.02 0.93 16 Total: -1.00 -79.55 374.16 2.15 -77.39 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: 0.27 Total: 16.72 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 5.29 Total: 2.37 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -4.12 Total: -121.36 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -0.07 Total: -29.81 kcal Atomic # 14 Polarization: 48.78 SS G_CDS: 2.03 Total: 50.81 kcal Atomic # 16 Polarization: 5.14 SS G_CDS: -1.25 Total: 3.89 kcal Total: -79.55 2.15 -77.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009437376.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.523 kcal (2) G-P(sol) polarization free energy of solvation -79.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds