Wall clock time and date at job start Tue Mar 31 2020 13:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46779 * 2 1 4 4 S 1.70616 * 124.52260 * 269.69125 * 3 2 1 5 5 C 1.75834 * 91.56542 * 179.97438 * 4 3 2 6 6 C 1.46581 * 125.46121 * 180.09600 * 5 4 3 7 7 O 1.21702 * 120.00031 * 180.23515 * 6 5 4 8 8 N 1.34774 * 119.99525 * 0.23191 * 6 5 4 9 9 C 1.46504 * 119.99611 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.49817 * 35.06331 * 9 8 6 11 11 C 1.53036 * 109.49710 * 155.16352 * 9 8 6 12 12 C 1.53041 * 109.53862 * 181.31541 * 11 9 8 13 13 C 1.53191 * 109.31484 * 298.63530 * 12 11 9 14 14 N 1.46926 * 108.77468 * 54.63151 * 13 12 11 15 15 C 1.36930 * 120.62817 * 126.41860 * 14 13 12 16 16 H 1.08004 * 120.00369 * 331.80648 * 15 14 13 17 17 C 1.38815 * 119.99923 * 151.80660 * 15 14 13 18 18 N 1.31612 * 120.00026 * 343.08340 * 17 15 14 19 19 Si 1.86801 * 119.99807 * 163.08433 * 17 15 14 20 20 H 1.48499 * 109.47274 * 60.00088 * 19 17 15 21 21 H 1.48507 * 109.46836 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47096 * 299.99789 * 19 17 15 23 23 C 1.46930 * 118.73721 * 306.39421 * 14 13 12 24 24 C 1.36647 * 109.07999 * 0.29490 * 5 4 3 25 25 C 1.33815 * 124.52218 * 89.99966 * 3 2 1 26 26 C 1.50699 * 122.45266 * 359.97438 * 25 3 2 27 27 H 1.08996 * 109.47351 * 300.00109 * 1 2 3 28 28 H 1.09000 * 109.46595 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46847 * 60.00371 * 1 2 3 30 30 H 1.09002 * 109.46847 * 119.99629 * 2 1 3 31 31 H 1.08996 * 109.47351 * 239.99891 * 2 1 3 32 32 H 0.97002 * 120.00756 * 0.02562 * 8 6 5 33 33 H 1.09002 * 109.46338 * 301.33229 * 11 9 8 34 34 H 1.08999 * 109.46185 * 61.29405 * 11 9 8 35 35 H 1.09004 * 109.50113 * 178.67977 * 12 11 9 36 36 H 1.09003 * 109.49603 * 58.58892 * 12 11 9 37 37 H 1.09005 * 109.58228 * 294.84947 * 13 12 11 38 38 H 1.08995 * 109.70415 * 174.49239 * 13 12 11 39 39 H 0.97003 * 120.00300 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.58936 * 293.81897 * 23 14 13 41 41 H 1.09003 * 109.58457 * 173.39669 * 23 14 13 42 42 H 1.08004 * 123.35224 * 179.79904 * 24 5 4 43 43 H 1.09006 * 109.47049 * 89.99652 * 26 25 3 44 44 H 1.08995 * 109.47663 * 210.00250 * 26 25 3 45 45 H 1.09002 * 109.47113 * 330.00731 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 16 2.3617 2.3300 -1.4057 5 6 2.8478 3.7230 -0.4491 6 6 3.3026 5.0079 -0.9883 7 8 3.6203 5.9070 -0.2321 8 7 3.3689 5.1936 -2.3215 9 6 3.8240 6.4777 -2.8605 10 1 4.5964 6.8912 -2.2120 11 6 4.3935 6.2690 -4.2655 12 6 4.8991 7.6042 -4.8164 13 6 3.7296 8.5892 -4.9102 14 7 3.0852 8.6849 -3.5932 15 6 2.9006 9.9020 -2.9937 16 1 3.5766 10.7170 -3.2066 17 6 1.8444 10.0885 -2.1124 18 7 0.8410 9.2371 -2.0982 19 14 1.8475 11.5481 -0.9465 20 1 1.8868 12.8083 -1.7311 21 1 0.6173 11.5201 -0.1152 22 1 3.0411 11.4757 -0.0660 23 6 2.6422 7.4498 -2.9321 24 6 2.7379 3.4142 0.8774 25 6 2.2850 2.1359 1.1025 26 6 2.0880 1.5803 2.4894 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.1154 4.4772 -2.9244 33 1 5.2190 5.5586 -4.2209 34 1 3.6136 5.8784 -4.9191 35 1 5.3259 7.4507 -5.8076 36 1 5.6617 8.0074 -4.1500 37 1 3.0083 8.2309 -5.6447 38 1 4.0985 9.5704 -5.2087 39 1 0.1031 9.3671 -1.4820 40 1 1.8322 6.9987 -3.5053 41 1 2.2958 7.6788 -1.9243 42 1 2.9821 4.1058 1.6703 43 1 3.0093 1.1034 2.8241 44 1 1.8293 2.3899 3.1718 45 1 1.2830 0.8455 2.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009437378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:17 Heat of formation + Delta-G solvation = -1.899373 kcal Electronic energy + Delta-G solvation = -25062.776299 eV Core-core repulsion = 21592.645125 eV Total energy + Delta-G solvation = -3470.131175 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.60793 -38.57061 -37.17616 -34.11441 -33.92667 -32.65594 -30.62221 -29.99008 -28.91170 -27.47799 -25.24316 -24.74118 -22.67723 -22.16194 -21.65575 -20.22356 -19.45630 -18.56453 -17.77414 -16.74121 -16.31034 -15.49276 -15.01240 -14.85306 -14.50343 -14.30547 -14.10848 -13.97783 -13.64134 -13.41439 -13.23757 -12.97654 -12.80522 -12.42931 -12.37406 -12.29403 -12.25528 -11.86755 -11.75577 -11.51325 -11.34228 -10.99395 -10.86220 -10.74767 -10.67453 -10.47208 -10.24213 -10.00749 -9.91541 -9.55671 -9.47664 -8.71843 -8.55127 -8.39719 -8.38797 -6.62491 -5.72258 -3.16138 0.53820 1.43754 1.85437 2.36246 3.42668 3.48107 3.51497 3.53870 3.57677 4.45924 4.56987 4.72892 4.89375 4.98333 5.12079 5.17410 5.27678 5.37308 5.42369 5.46123 5.52153 5.54919 5.56255 5.64510 5.67727 5.69825 5.76405 5.90953 5.95389 6.09324 6.15596 6.25131 6.35632 6.40564 6.43796 6.50436 6.71187 6.78405 6.91722 6.98164 7.31636 7.75170 7.84097 7.90121 8.50753 8.58484 9.25989 9.90031 10.45084 11.35748 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.003460 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.824558 B = 8090.876345 C = 9131.152478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.052 4.052 3 C -0.203 4.203 4 S 0.190 5.810 5 C -0.249 4.249 6 C 0.584 3.416 7 O -0.520 6.520 8 N -0.715 5.715 9 C 0.117 3.883 10 H 0.084 0.916 11 C -0.116 4.116 12 C -0.130 4.130 13 C 0.142 3.858 14 N -0.588 5.588 15 C -0.258 4.258 16 H 0.066 0.934 17 C 0.007 3.993 18 N -0.899 5.899 19 Si 0.903 3.097 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.167 3.833 24 C -0.057 4.057 25 C -0.118 4.118 26 C -0.093 4.093 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.389 0.611 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.018 0.982 38 H 0.056 0.944 39 H 0.254 0.746 40 H 0.017 0.983 41 H 0.095 0.905 42 H 0.152 0.848 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.602 -21.103 1.812 21.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.091 4.091 3 C -0.323 4.323 4 S 0.459 5.541 5 C -0.369 4.369 6 C 0.369 3.631 7 O -0.397 6.397 8 N -0.365 5.365 9 C 0.012 3.988 10 H 0.102 0.898 11 C -0.155 4.155 12 C -0.170 4.170 13 C 0.016 3.984 14 N -0.311 5.311 15 C -0.388 4.388 16 H 0.084 0.916 17 C -0.192 4.192 18 N -0.543 5.543 19 Si 0.732 3.268 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.209 1.209 23 C 0.040 3.960 24 C -0.090 4.090 25 C -0.131 4.131 26 C -0.152 4.152 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.222 0.778 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.036 0.964 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.036 0.964 41 H 0.113 0.887 42 H 0.170 0.830 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.582 -20.680 0.848 20.857 hybrid contribution -0.164 0.617 1.855 1.961 sum 2.418 -20.063 2.703 20.388 Atomic orbital electron populations 1.21800 0.94168 1.01946 1.02793 1.20097 0.96300 0.89513 1.03207 1.23974 1.08927 1.02026 0.97350 1.82843 1.60685 1.02710 1.07845 1.24699 1.14986 0.99287 0.97931 1.16908 0.78177 0.85306 0.82704 1.90871 1.48647 1.42326 1.57872 1.45968 1.67912 1.16877 1.05783 1.22035 1.00238 0.82805 0.93677 0.89769 1.21683 0.99682 0.98056 0.96041 1.22000 0.99851 0.95673 0.99494 1.20962 0.92304 0.96736 0.88442 1.43949 1.69518 1.02618 1.14980 1.19100 1.07413 0.89583 1.22674 0.91642 1.25042 0.94714 0.98070 1.01348 1.70000 1.08110 1.38097 1.38056 0.86371 0.77063 0.82169 0.81173 1.20899 1.21619 1.20850 1.21090 0.90354 0.84237 1.00313 1.20624 0.97214 0.95697 0.95426 1.18636 1.04091 0.93958 0.96411 1.20506 1.01883 1.01015 0.91754 0.92143 0.92026 0.92267 0.89948 0.90818 0.77809 0.93031 0.92213 0.92568 0.92072 0.96411 0.92575 0.93589 0.96446 0.88714 0.83042 0.91344 0.91300 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 37.16 0.37 -0.70 16 2 C -0.05 -0.40 5.72 -27.88 -0.16 -0.56 16 3 C -0.20 -2.16 5.53 -35.86 -0.20 -2.35 16 4 S 0.19 2.19 22.10 -107.50 -2.38 -0.18 16 5 C -0.25 -3.86 6.45 -36.79 -0.24 -4.09 16 6 C 0.58 11.22 7.75 -12.90 -0.10 11.12 16 7 O -0.52 -12.26 16.50 5.19 0.09 -12.18 16 8 N -0.72 -12.63 5.08 -55.03 -0.28 -12.91 16 9 C 0.12 2.38 2.60 -67.81 -0.18 2.20 16 10 H 0.08 1.92 7.58 -51.93 -0.39 1.53 16 11 C -0.12 -1.93 5.35 -26.69 -0.14 -2.07 16 12 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 13 C 0.14 2.99 6.52 -3.71 -0.02 2.96 16 14 N -0.59 -15.22 2.99 -172.32 -0.52 -15.74 16 15 C -0.26 -7.37 9.58 -15.06 -0.14 -7.51 16 16 H 0.07 1.82 7.89 -52.48 -0.41 1.40 16 17 C 0.01 0.22 4.92 -17.43 -0.09 0.13 16 18 N -0.90 -27.30 11.20 55.49 0.62 -26.67 16 19 Si 0.90 22.86 29.59 -169.99 -5.03 17.83 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 23 C 0.17 4.18 4.88 -3.71 -0.02 4.17 16 24 C -0.06 -0.81 9.80 -40.43 -0.40 -1.21 16 25 C -0.12 -1.36 5.78 -106.45 -0.62 -1.98 16 26 C -0.09 -0.80 9.55 36.01 0.34 -0.45 16 27 H 0.06 0.46 7.80 -51.93 -0.41 0.05 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.54 7.25 -51.93 -0.38 0.16 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.39 5.63 7.72 -40.82 -0.31 5.31 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 39 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 2.80 6.06 -51.93 -0.31 2.48 16 42 H 0.15 2.18 8.06 -52.48 -0.42 1.76 16 43 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.58 8.13 -51.93 -0.42 0.16 16 45 H 0.07 0.48 6.86 -51.93 -0.36 0.12 16 LS Contribution 374.19 15.07 5.64 5.64 Total: -1.00 -33.56 374.19 -10.80 -44.36 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.19 Total: 2.58 kcal Atomic # 6 Polarization: -0.99 SS G_CDS: -1.75 Total: -2.74 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.17 Total: -55.32 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.83 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -2.38 Total: -0.18 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.56 -10.80 -44.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009437378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.463 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds