Wall clock time and date at job start Tue Mar 31 2020 13:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.46779 * 2 1 4 4 S 1.70616 * 124.52260 * 269.69125 * 3 2 1 5 5 C 1.75834 * 91.56542 * 179.97438 * 4 3 2 6 6 C 1.46581 * 125.46121 * 180.09600 * 5 4 3 7 7 O 1.21702 * 120.00031 * 180.23515 * 6 5 4 8 8 N 1.34774 * 119.99525 * 0.23191 * 6 5 4 9 9 C 1.46504 * 119.99611 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.49817 * 35.06331 * 9 8 6 11 11 C 1.53036 * 109.49710 * 155.16352 * 9 8 6 12 12 C 1.53041 * 109.53862 * 181.31541 * 11 9 8 13 13 C 1.53191 * 109.31484 * 298.63530 * 12 11 9 14 14 N 1.46926 * 108.77468 * 54.63151 * 13 12 11 15 15 C 1.36930 * 120.62817 * 126.41860 * 14 13 12 16 16 H 1.08004 * 120.00369 * 331.80648 * 15 14 13 17 17 C 1.38815 * 119.99923 * 151.80660 * 15 14 13 18 18 N 1.31612 * 120.00026 * 343.08340 * 17 15 14 19 19 Si 1.86801 * 119.99807 * 163.08433 * 17 15 14 20 20 H 1.48499 * 109.47274 * 60.00088 * 19 17 15 21 21 H 1.48507 * 109.46836 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47096 * 299.99789 * 19 17 15 23 23 C 1.46930 * 118.73721 * 306.39421 * 14 13 12 24 24 C 1.36647 * 109.07999 * 0.29490 * 5 4 3 25 25 C 1.33815 * 124.52218 * 89.99966 * 3 2 1 26 26 C 1.50699 * 122.45266 * 359.97438 * 25 3 2 27 27 H 1.08996 * 109.47351 * 300.00109 * 1 2 3 28 28 H 1.09000 * 109.46595 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46847 * 60.00371 * 1 2 3 30 30 H 1.09002 * 109.46847 * 119.99629 * 2 1 3 31 31 H 1.08996 * 109.47351 * 239.99891 * 2 1 3 32 32 H 0.97002 * 120.00756 * 0.02562 * 8 6 5 33 33 H 1.09002 * 109.46338 * 301.33229 * 11 9 8 34 34 H 1.08999 * 109.46185 * 61.29405 * 11 9 8 35 35 H 1.09004 * 109.50113 * 178.67977 * 12 11 9 36 36 H 1.09003 * 109.49603 * 58.58892 * 12 11 9 37 37 H 1.09005 * 109.58228 * 294.84947 * 13 12 11 38 38 H 1.08995 * 109.70415 * 174.49239 * 13 12 11 39 39 H 0.97003 * 120.00300 * 179.97438 * 18 17 15 40 40 H 1.08998 * 109.58936 * 293.81897 * 23 14 13 41 41 H 1.09003 * 109.58457 * 173.39669 * 23 14 13 42 42 H 1.08004 * 123.35224 * 179.79904 * 24 5 4 43 43 H 1.09006 * 109.47049 * 89.99652 * 26 25 3 44 44 H 1.08995 * 109.47663 * 210.00250 * 26 25 3 45 45 H 1.09002 * 109.47113 * 330.00731 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 16 2.3617 2.3300 -1.4057 5 6 2.8478 3.7230 -0.4491 6 6 3.3026 5.0079 -0.9883 7 8 3.6203 5.9070 -0.2321 8 7 3.3689 5.1936 -2.3215 9 6 3.8240 6.4777 -2.8605 10 1 4.5964 6.8912 -2.2120 11 6 4.3935 6.2690 -4.2655 12 6 4.8991 7.6042 -4.8164 13 6 3.7296 8.5892 -4.9102 14 7 3.0852 8.6849 -3.5932 15 6 2.9006 9.9020 -2.9937 16 1 3.5766 10.7170 -3.2066 17 6 1.8444 10.0885 -2.1124 18 7 0.8410 9.2371 -2.0982 19 14 1.8475 11.5481 -0.9465 20 1 1.8868 12.8083 -1.7311 21 1 0.6173 11.5201 -0.1152 22 1 3.0411 11.4757 -0.0660 23 6 2.6422 7.4498 -2.9321 24 6 2.7379 3.4142 0.8774 25 6 2.2850 2.1359 1.1025 26 6 2.0880 1.5803 2.4894 27 1 -0.3634 0.5138 0.8899 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.1154 4.4772 -2.9244 33 1 5.2190 5.5586 -4.2209 34 1 3.6136 5.8784 -4.9191 35 1 5.3259 7.4507 -5.8076 36 1 5.6617 8.0074 -4.1500 37 1 3.0083 8.2309 -5.6447 38 1 4.0985 9.5704 -5.2087 39 1 0.1031 9.3671 -1.4820 40 1 1.8322 6.9987 -3.5053 41 1 2.2958 7.6788 -1.9243 42 1 2.9821 4.1058 1.6703 43 1 3.0093 1.1034 2.8241 44 1 1.8293 2.3899 3.1718 45 1 1.2830 0.8455 2.4756 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009437378.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:17 Heat of formation + Delta-G solvation = -22.899475 kcal Electronic energy + Delta-G solvation = -25063.686932 eV Core-core repulsion = 21592.645125 eV Total energy + Delta-G solvation = -3471.041807 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.07881 -39.66907 -38.80939 -35.88496 -34.75222 -34.45928 -32.02407 -31.54578 -30.38011 -28.32016 -27.27547 -25.88805 -23.99028 -23.59268 -23.02364 -21.69631 -21.03846 -19.66111 -18.96930 -18.72110 -17.55740 -16.94830 -16.81019 -16.17401 -15.92023 -15.52903 -15.33872 -15.27981 -15.15397 -14.76720 -14.58501 -14.20094 -14.06635 -14.04556 -13.53524 -13.45152 -13.14604 -13.02928 -12.95321 -12.70776 -12.66847 -12.50838 -12.32189 -12.23184 -12.10063 -12.07390 -11.72758 -11.66050 -11.65184 -11.31287 -11.11424 -10.58482 -10.26238 -9.66433 -9.33853 -8.71917 -7.91767 -5.38175 -0.54326 0.42985 0.87539 1.31043 1.38536 1.45103 1.49444 2.01745 2.17146 2.47328 3.24688 3.62691 3.71602 3.80395 3.94486 4.09272 4.10095 4.18478 4.22717 4.40802 4.44497 4.44659 4.49441 4.56635 4.78566 4.81618 4.84761 4.87628 4.89511 5.00493 5.05442 5.06534 5.12783 5.17404 5.17810 5.27863 5.31127 5.35841 5.41262 5.49916 5.53918 5.59019 5.71836 6.32798 6.45512 7.07564 7.14222 7.81980 8.31553 9.13091 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.015215 B = 0.003460 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.824558 B = 8090.876345 C = 9131.152478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.053 4.053 3 C -0.186 4.186 4 S 0.238 5.762 5 C -0.298 4.298 6 C 0.580 3.420 7 O -0.580 6.580 8 N -0.704 5.704 9 C 0.130 3.870 10 H 0.053 0.947 11 C -0.108 4.108 12 C -0.120 4.120 13 C 0.134 3.866 14 N -0.609 5.609 15 C -0.267 4.267 16 H 0.070 0.930 17 C -0.050 4.050 18 N -0.931 5.931 19 Si 0.963 3.037 20 H -0.265 1.265 21 H -0.294 1.294 22 H -0.285 1.285 23 C 0.180 3.820 24 C -0.057 4.057 25 C -0.133 4.133 26 C -0.091 4.091 27 H 0.054 0.946 28 H 0.082 0.918 29 H 0.049 0.951 30 H 0.102 0.898 31 H 0.090 0.910 32 H 0.407 0.593 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.052 0.948 37 H 0.023 0.977 38 H 0.057 0.943 39 H 0.247 0.753 40 H 0.000 1.000 41 H 0.041 0.959 42 H 0.136 0.864 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.255 -24.120 0.660 24.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.092 4.092 3 C -0.306 4.306 4 S 0.508 5.492 5 C -0.418 4.418 6 C 0.368 3.632 7 O -0.461 6.461 8 N -0.355 5.355 9 C 0.025 3.975 10 H 0.072 0.928 11 C -0.146 4.146 12 C -0.160 4.160 13 C 0.010 3.990 14 N -0.333 5.333 15 C -0.397 4.397 16 H 0.087 0.913 17 C -0.246 4.246 18 N -0.577 5.577 19 Si 0.790 3.210 20 H -0.190 1.190 21 H -0.220 1.220 22 H -0.212 1.212 23 C 0.053 3.947 24 C -0.092 4.092 25 C -0.145 4.145 26 C -0.149 4.149 27 H 0.073 0.927 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.243 0.757 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.018 0.982 41 H 0.060 0.940 42 H 0.154 0.846 43 H 0.100 0.900 44 H 0.083 0.917 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.254 -23.728 -0.370 23.953 hybrid contribution -0.398 1.447 2.183 2.650 sum 2.855 -22.281 1.813 22.536 Atomic orbital electron populations 1.21814 0.93606 1.03195 1.02118 1.20305 0.96589 0.87305 1.05043 1.24539 1.06316 1.03244 0.96545 1.82548 1.59385 1.00080 1.07175 1.24413 1.18477 0.99623 0.99334 1.17480 0.76975 0.86133 0.82642 1.90822 1.51382 1.44774 1.59169 1.45773 1.67455 1.16446 1.05830 1.21609 0.97207 0.82827 0.95906 0.92828 1.21669 1.01155 0.98760 0.92993 1.21902 0.97742 0.94505 1.01822 1.21203 0.93456 0.98341 0.86028 1.44236 1.69960 1.01997 1.17124 1.19482 1.06909 0.90715 1.22615 0.91270 1.25821 0.94716 1.00900 1.03158 1.70162 1.08717 1.40022 1.38797 0.85412 0.76433 0.79969 0.79150 1.18973 1.21998 1.21187 1.20755 0.91811 0.85244 0.96892 1.20793 0.96721 0.96855 0.94813 1.18819 1.04456 0.92854 0.98374 1.20570 1.03260 1.01322 0.89781 0.92662 0.89868 0.93185 0.87949 0.89179 0.75678 0.89481 0.90573 0.88104 0.92959 0.95927 0.92426 0.94403 0.98198 0.94024 0.84583 0.90000 0.91656 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.89 71.98 0.71 -0.93 16 2 C -0.05 -0.61 5.72 29.85 0.17 -0.44 16 3 C -0.19 -3.51 5.53 24.68 0.14 -3.37 16 4 S 0.24 5.13 22.10 -56.49 -1.25 3.88 16 5 C -0.30 -9.53 6.45 24.08 0.16 -9.37 16 6 C 0.58 23.58 7.75 86.42 0.67 24.25 16 7 O -0.58 -29.68 16.50 -4.35 -0.07 -29.75 16 8 N -0.70 -25.44 5.08 -446.22 -2.27 -27.71 16 9 C 0.13 5.40 2.60 45.07 0.12 5.52 16 10 H 0.05 2.56 7.58 -2.38 -0.02 2.54 16 11 C -0.11 -3.32 5.35 30.62 0.16 -3.15 16 12 C -0.12 -3.83 6.08 30.67 0.19 -3.64 16 13 C 0.13 5.56 6.52 86.36 0.56 6.12 16 14 N -0.61 -32.42 2.99 -699.09 -2.09 -34.51 16 15 C -0.27 -15.71 9.58 84.04 0.81 -14.90 16 16 H 0.07 3.92 7.89 -2.91 -0.02 3.89 16 17 C -0.05 -3.04 4.92 84.86 0.42 -2.62 16 18 N -0.93 -59.48 11.20 21.65 0.24 -59.24 16 19 Si 0.96 48.71 29.59 68.60 2.03 50.74 16 20 H -0.26 -12.49 7.11 99.48 0.71 -11.79 16 21 H -0.29 -14.89 7.11 99.48 0.71 -14.19 16 22 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 23 C 0.18 9.46 4.88 86.36 0.42 9.88 16 24 C -0.06 -1.70 9.80 21.72 0.21 -1.48 16 25 C -0.13 -2.91 5.78 -21.05 -0.12 -3.03 16 26 C -0.09 -1.38 9.55 71.24 0.68 -0.70 16 27 H 0.05 0.68 7.80 -2.39 -0.02 0.66 16 28 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.86 7.25 -2.39 -0.02 0.84 16 31 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.41 11.49 7.72 -92.71 -0.72 10.78 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.10 2.39 8.14 -2.38 -0.02 2.38 16 36 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.02 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.06 2.32 7.93 -2.39 -0.02 2.30 16 39 H 0.25 15.42 8.31 -92.71 -0.77 14.65 16 40 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.04 2.63 6.06 -2.39 -0.01 2.61 16 42 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 45 H 0.09 0.97 6.86 -2.39 -0.02 0.95 16 Total: -1.00 -79.55 374.19 2.16 -77.39 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: 0.27 Total: 17.08 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 5.29 Total: 2.12 kcal Atomic # 7 Polarization: -117.35 SS G_CDS: -4.12 Total: -121.46 kcal Atomic # 8 Polarization: -29.68 SS G_CDS: -0.07 Total: -29.75 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 2.03 Total: 50.74 kcal Atomic # 16 Polarization: 5.13 SS G_CDS: -1.25 Total: 3.88 kcal Total: -79.55 2.16 -77.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009437378.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.493 kcal (2) G-P(sol) polarization free energy of solvation -79.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds