Wall clock time and date at job start Tue Mar 31 2020 13:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47427 * 2 1 4 4 C 1.50708 * 109.47174 * 119.99888 * 2 1 3 5 5 C 1.37465 * 123.34918 * 305.62565 * 4 2 1 6 6 C 1.33821 * 115.09876 * 180.26867 * 5 4 2 7 7 S 1.70611 * 110.95602 * 359.74446 * 6 5 4 8 8 C 1.36650 * 123.35237 * 125.41706 * 4 2 1 9 9 C 1.46583 * 125.45420 * 0.02562 * 8 4 2 10 10 O 1.21697 * 120.00381 * 353.93826 * 9 8 4 11 11 N 1.34786 * 119.99474 * 173.92856 * 9 8 4 12 12 C 1.46501 * 119.99562 * 180.27740 * 11 9 8 13 13 H 1.08996 * 109.50066 * 324.66344 * 12 11 9 14 14 C 1.53043 * 109.49573 * 204.56614 * 12 11 9 15 15 C 1.53035 * 109.53618 * 178.68563 * 14 12 11 16 16 C 1.53198 * 109.31526 * 61.36710 * 15 14 12 17 17 N 1.46925 * 108.76973 * 305.35904 * 16 15 14 18 18 C 1.36931 * 120.63315 * 233.62588 * 17 16 15 19 19 H 1.08002 * 120.00343 * 148.87390 * 18 17 16 20 20 C 1.38812 * 119.99963 * 328.88385 * 18 17 16 21 21 N 1.31626 * 120.00096 * 164.77161 * 20 18 17 22 22 Si 1.86796 * 120.00136 * 344.76832 * 20 18 17 23 23 H 1.48493 * 109.47058 * 90.86986 * 22 20 18 24 24 H 1.48504 * 109.47362 * 210.87072 * 22 20 18 25 25 H 1.48503 * 109.47050 * 330.86768 * 22 20 18 26 26 C 1.46934 * 118.73966 * 53.61595 * 17 16 15 27 27 H 1.09004 * 109.46685 * 59.99865 * 1 2 3 28 28 H 1.08993 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46649 * 300.00250 * 1 2 3 30 30 H 1.08999 * 109.47557 * 239.99675 * 2 1 3 31 31 H 1.09002 * 109.47084 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46840 * 299.99962 * 3 2 1 33 33 H 1.08998 * 109.46892 * 60.00121 * 3 2 1 34 34 H 1.08004 * 122.45549 * 359.97438 * 5 4 2 35 35 H 1.08006 * 124.52281 * 179.76737 * 6 5 4 36 36 H 0.96995 * 119.99931 * 0.02562 * 11 9 8 37 37 H 1.09005 * 109.45819 * 298.70468 * 14 12 11 38 38 H 1.08993 * 109.45814 * 58.66067 * 14 12 11 39 39 H 1.08997 * 109.50331 * 301.41300 * 15 14 12 40 40 H 1.09002 * 109.49470 * 181.31499 * 15 14 12 41 41 H 1.09002 * 109.58664 * 185.57818 * 16 15 14 42 42 H 1.08994 * 109.70221 * 65.22015 * 16 15 14 43 43 H 0.96996 * 119.99912 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.58960 * 186.60031 * 26 17 16 45 45 H 1.08995 * 109.58623 * 66.17045 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6537 -0.3698 2.5073 6 6 2.2049 -1.1070 3.4787 7 16 3.2430 -2.2947 2.8287 8 6 2.9065 -1.7599 1.1879 9 6 3.4770 -2.3424 -0.0303 10 8 3.0958 -1.9636 -1.1222 11 7 4.4239 -3.2974 0.0590 12 6 4.9985 -3.8752 -1.1585 13 1 4.2290 -3.9422 -1.9276 14 6 5.5402 -5.2737 -0.8537 15 6 6.1111 -5.8912 -2.1323 16 6 7.2678 -5.0248 -2.6407 17 7 6.7906 -3.6442 -2.7984 18 6 6.9466 -2.9836 -3.9876 19 1 6.2225 -2.2428 -4.2930 20 6 8.0355 -3.2662 -4.8009 21 7 8.0396 -2.8706 -6.0563 22 14 9.4952 -4.2077 -4.1136 23 1 9.2932 -5.6625 -4.3324 24 1 10.7354 -3.7708 -4.8037 25 1 9.6173 -3.9382 -2.6584 26 6 6.1424 -2.9859 -1.6559 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 0.9654 0.4370 2.7120 35 1 2.0174 -0.9687 4.5333 36 1 4.7275 -3.5994 0.9293 37 1 6.3266 -5.2027 -0.1022 38 1 4.7331 -5.9014 -0.4762 39 1 5.3315 -5.9397 -2.8925 40 1 6.4756 -6.8962 -1.9196 41 1 7.6131 -5.4042 -3.6025 42 1 8.0877 -5.0484 -1.9229 43 1 8.8003 -3.0684 -6.6246 44 1 5.7453 -2.0200 -1.9678 45 1 6.8689 -2.8436 -0.8559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009607087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:48 Heat of formation + Delta-G solvation = 9.779661 kcal Electronic energy + Delta-G solvation = -25435.533803 eV Core-core repulsion = 21965.909069 eV Total energy + Delta-G solvation = -3469.624734 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.08923 -38.66016 -37.37597 -34.53725 -34.07981 -32.53576 -30.82641 -30.39388 -28.73951 -27.15109 -25.31610 -24.98448 -22.88351 -21.98755 -21.79621 -20.92354 -19.90148 -18.68165 -17.75125 -16.78493 -16.31674 -15.71577 -15.48120 -15.09287 -14.93836 -14.23808 -14.08240 -13.89259 -13.66264 -13.64743 -13.43084 -13.20019 -12.86979 -12.78976 -12.59190 -12.34899 -12.15745 -12.08435 -11.62433 -11.49503 -11.20861 -11.16575 -10.97884 -10.90909 -10.79284 -10.76997 -10.12806 -9.95974 -9.72735 -9.52654 -9.44169 -9.09555 -8.89837 -8.63261 -8.53236 -6.90374 -5.90075 -3.32617 0.38431 1.31009 1.69555 2.25143 3.19429 3.30313 3.32123 3.48355 3.51168 4.54515 4.62778 4.74372 4.88537 4.98890 5.04132 5.18570 5.19817 5.23937 5.27946 5.41601 5.50042 5.51192 5.58117 5.60591 5.79398 5.81087 5.85947 5.93336 5.97864 6.03098 6.06032 6.18870 6.19945 6.24660 6.30380 6.41148 6.44760 6.61996 6.64523 6.67415 6.79147 6.93174 7.59633 8.02801 8.31404 8.39780 8.97759 9.74472 10.11363 11.26002 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018067 B = 0.003437 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.420301 B = 8145.139172 C = 9039.782841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C -0.137 4.137 4 C -0.012 4.012 5 C -0.141 4.141 6 C -0.232 4.232 7 S 0.185 5.815 8 C -0.263 4.263 9 C 0.588 3.412 10 O -0.515 6.515 11 N -0.719 5.719 12 C 0.126 3.874 13 H 0.093 0.907 14 C -0.117 4.117 15 C -0.131 4.131 16 C 0.119 3.881 17 N -0.602 5.602 18 C -0.259 4.259 19 H 0.086 0.914 20 C 0.024 3.976 21 N -0.912 5.912 22 Si 0.890 3.110 23 H -0.288 1.288 24 H -0.304 1.304 25 H -0.270 1.270 26 C 0.145 3.855 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.125 0.875 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.143 0.857 35 H 0.167 0.833 36 H 0.392 0.608 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.027 0.973 43 H 0.263 0.737 44 H 0.069 0.931 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.642 0.978 21.382 24.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 C -0.195 4.195 4 C -0.027 4.027 5 C -0.173 4.173 6 C -0.369 4.369 7 S 0.453 5.547 8 C -0.383 4.383 9 C 0.374 3.626 10 O -0.393 6.393 11 N -0.369 5.369 12 C 0.021 3.979 13 H 0.111 0.889 14 C -0.155 4.155 15 C -0.171 4.171 16 C -0.006 4.006 17 N -0.326 5.326 18 C -0.387 4.387 19 H 0.104 0.896 20 C -0.175 4.175 21 N -0.555 5.555 22 Si 0.721 3.279 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.196 1.196 26 C 0.017 3.983 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.142 0.858 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.160 0.840 35 H 0.184 0.816 36 H 0.225 0.775 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.045 0.955 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -11.879 0.110 21.079 24.196 hybrid contribution 0.105 0.481 0.455 0.670 sum -11.774 0.591 21.534 24.549 Atomic orbital electron populations 1.21778 0.94435 1.01754 1.01533 1.20447 0.95658 0.96133 0.96789 1.21763 1.01407 0.94845 1.01484 1.19511 0.93796 0.93392 0.95955 1.19878 1.03629 1.02701 0.91102 1.25192 1.04727 1.02611 1.04410 1.82933 1.42759 1.32403 0.96564 1.24522 1.10334 1.06494 0.96986 1.16917 0.79155 0.79312 0.87202 1.90745 1.60830 1.60287 1.27460 1.46011 1.40403 1.40383 1.10100 1.21756 0.97338 0.93232 0.85583 0.88874 1.21686 0.99903 0.95097 0.98803 1.21992 1.00190 0.98295 0.96605 1.21457 0.94092 0.85401 0.99669 1.44265 1.69069 1.09038 1.10202 1.18955 1.05915 1.20476 0.93383 0.89628 1.25355 0.97503 0.98698 0.95897 1.69791 1.31321 1.49383 1.05003 0.86868 0.83090 0.78750 0.79202 1.21565 1.23247 1.19559 1.21229 0.91825 0.95405 0.89813 0.92121 0.92742 0.93095 0.85779 0.92546 0.92051 0.93150 0.83984 0.81582 0.77484 0.92066 0.92363 0.91353 0.92200 0.90799 0.95519 0.92758 0.91296 0.95978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.98 37.16 0.33 -1.06 16 2 C -0.07 -0.86 3.07 -91.77 -0.28 -1.15 16 3 C -0.14 -1.51 9.09 37.16 0.34 -1.17 16 4 C -0.01 -0.14 4.72 -105.47 -0.50 -0.64 16 5 C -0.14 -1.35 9.18 -41.41 -0.38 -1.73 16 6 C -0.23 -1.93 10.92 29.18 0.32 -1.61 16 7 S 0.18 1.69 22.17 -107.50 -2.38 -0.69 16 8 C -0.26 -3.37 6.45 -36.79 -0.24 -3.61 16 9 C 0.59 9.23 7.73 -12.89 -0.10 9.13 16 10 O -0.52 -9.90 13.66 5.19 0.07 -9.83 16 11 N -0.72 -10.27 5.08 -55.02 -0.28 -10.55 16 12 C 0.13 2.15 2.60 -67.81 -0.18 1.98 16 13 H 0.09 1.83 7.58 -51.93 -0.39 1.44 16 14 C -0.12 -1.72 5.35 -26.69 -0.14 -1.86 16 15 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 16 C 0.12 2.57 4.17 -3.71 -0.02 2.55 16 17 N -0.60 -14.59 2.74 -172.32 -0.47 -15.06 16 18 C -0.26 -7.46 10.04 -15.06 -0.15 -7.61 16 19 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 20 C 0.02 0.71 5.30 -17.43 -0.09 0.62 16 21 N -0.91 -28.49 13.97 55.49 0.78 -27.71 16 22 Si 0.89 22.63 24.29 -169.99 -4.13 18.50 16 23 H -0.29 -6.99 6.61 56.52 0.37 -6.62 16 24 H -0.30 -7.88 7.11 56.52 0.40 -7.47 16 25 H -0.27 -6.71 6.45 56.52 0.36 -6.35 16 26 C 0.14 3.00 6.09 -3.71 -0.02 2.98 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.43 7.49 -51.93 -0.39 0.04 16 30 H 0.12 1.94 4.95 -51.93 -0.26 1.68 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.46 8.01 -51.93 -0.42 0.05 16 34 H 0.14 1.08 7.65 -52.48 -0.40 0.68 16 35 H 0.17 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.39 4.46 7.73 -40.82 -0.32 4.15 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.07 1.74 4.58 -51.93 -0.24 1.51 16 42 H 0.03 0.57 6.87 -51.93 -0.36 0.21 16 43 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 44 H 0.07 1.57 7.93 -51.93 -0.41 1.16 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 362.38 15.07 5.46 5.46 Total: -1.00 -32.78 362.38 -9.26 -42.04 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.03 Total: 3.41 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -1.27 Total: -5.56 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: 0.02 Total: -53.32 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.07 Total: -9.83 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -4.13 Total: 18.50 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.38 Total: -0.69 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.78 -9.26 -42.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009607087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.817 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds