Wall clock time and date at job start Tue Mar 31 2020 13:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47427 * 2 1 4 4 C 1.50708 * 109.47174 * 119.99888 * 2 1 3 5 5 C 1.37465 * 123.34918 * 305.62565 * 4 2 1 6 6 C 1.33821 * 115.09876 * 180.26867 * 5 4 2 7 7 S 1.70611 * 110.95602 * 359.74446 * 6 5 4 8 8 C 1.36650 * 123.35237 * 125.41706 * 4 2 1 9 9 C 1.46583 * 125.45420 * 0.02562 * 8 4 2 10 10 O 1.21697 * 120.00381 * 353.93826 * 9 8 4 11 11 N 1.34786 * 119.99474 * 173.92856 * 9 8 4 12 12 C 1.46501 * 119.99562 * 180.27740 * 11 9 8 13 13 H 1.08996 * 109.50066 * 324.66344 * 12 11 9 14 14 C 1.53043 * 109.49573 * 204.56614 * 12 11 9 15 15 C 1.53035 * 109.53618 * 178.68563 * 14 12 11 16 16 C 1.53198 * 109.31526 * 61.36710 * 15 14 12 17 17 N 1.46925 * 108.76973 * 305.35904 * 16 15 14 18 18 C 1.36931 * 120.63315 * 233.62588 * 17 16 15 19 19 H 1.08002 * 120.00343 * 148.87390 * 18 17 16 20 20 C 1.38812 * 119.99963 * 328.88385 * 18 17 16 21 21 N 1.31626 * 120.00096 * 164.77161 * 20 18 17 22 22 Si 1.86796 * 120.00136 * 344.76832 * 20 18 17 23 23 H 1.48493 * 109.47058 * 90.86986 * 22 20 18 24 24 H 1.48504 * 109.47362 * 210.87072 * 22 20 18 25 25 H 1.48503 * 109.47050 * 330.86768 * 22 20 18 26 26 C 1.46934 * 118.73966 * 53.61595 * 17 16 15 27 27 H 1.09004 * 109.46685 * 59.99865 * 1 2 3 28 28 H 1.08993 * 109.46977 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46649 * 300.00250 * 1 2 3 30 30 H 1.08999 * 109.47557 * 239.99675 * 2 1 3 31 31 H 1.09002 * 109.47084 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.46840 * 299.99962 * 3 2 1 33 33 H 1.08998 * 109.46892 * 60.00121 * 3 2 1 34 34 H 1.08004 * 122.45549 * 359.97438 * 5 4 2 35 35 H 1.08006 * 124.52281 * 179.76737 * 6 5 4 36 36 H 0.96995 * 119.99931 * 0.02562 * 11 9 8 37 37 H 1.09005 * 109.45819 * 298.70468 * 14 12 11 38 38 H 1.08993 * 109.45814 * 58.66067 * 14 12 11 39 39 H 1.08997 * 109.50331 * 301.41300 * 15 14 12 40 40 H 1.09002 * 109.49470 * 181.31499 * 15 14 12 41 41 H 1.09002 * 109.58664 * 185.57818 * 16 15 14 42 42 H 1.08994 * 109.70221 * 65.22015 * 16 15 14 43 43 H 0.96996 * 119.99912 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.58960 * 186.60031 * 26 17 16 45 45 H 1.08995 * 109.58623 * 66.17045 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.6537 -0.3698 2.5073 6 6 2.2049 -1.1070 3.4787 7 16 3.2430 -2.2947 2.8287 8 6 2.9065 -1.7599 1.1879 9 6 3.4770 -2.3424 -0.0303 10 8 3.0958 -1.9636 -1.1222 11 7 4.4239 -3.2974 0.0590 12 6 4.9985 -3.8752 -1.1585 13 1 4.2290 -3.9422 -1.9276 14 6 5.5402 -5.2737 -0.8537 15 6 6.1111 -5.8912 -2.1323 16 6 7.2678 -5.0248 -2.6407 17 7 6.7906 -3.6442 -2.7984 18 6 6.9466 -2.9836 -3.9876 19 1 6.2225 -2.2428 -4.2930 20 6 8.0355 -3.2662 -4.8009 21 7 8.0396 -2.8706 -6.0563 22 14 9.4952 -4.2077 -4.1136 23 1 9.2932 -5.6625 -4.3324 24 1 10.7354 -3.7708 -4.8037 25 1 9.6173 -3.9382 -2.6584 26 6 6.1424 -2.9859 -1.6559 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6768 1.9563 0.8900 34 1 0.9654 0.4370 2.7120 35 1 2.0174 -0.9687 4.5333 36 1 4.7275 -3.5994 0.9293 37 1 6.3266 -5.2027 -0.1022 38 1 4.7331 -5.9014 -0.4762 39 1 5.3315 -5.9397 -2.8925 40 1 6.4756 -6.8962 -1.9196 41 1 7.6131 -5.4042 -3.6025 42 1 8.0877 -5.0484 -1.9229 43 1 8.8003 -3.0684 -6.6246 44 1 5.7453 -2.0200 -1.9678 45 1 6.8689 -2.8436 -0.8559 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009607087.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:47 Heat of formation + Delta-G solvation = -12.202510 kcal Electronic energy + Delta-G solvation = -25436.487022 eV Core-core repulsion = 21965.909069 eV Total energy + Delta-G solvation = -3470.577952 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.26129 -39.79884 -38.75828 -36.04720 -34.99912 -34.32091 -32.71779 -31.60932 -29.93519 -28.01348 -27.24764 -25.95912 -24.18052 -23.76038 -22.69458 -22.10880 -21.42371 -19.79869 -18.86092 -18.57630 -17.48404 -17.12159 -16.87739 -16.40852 -16.14340 -15.70486 -15.46477 -15.18332 -14.99862 -14.78666 -14.54081 -14.47125 -14.39270 -14.10537 -13.77204 -13.48831 -13.39717 -13.30776 -12.96873 -12.82936 -12.63695 -12.45375 -12.37189 -12.06856 -12.01364 -11.84302 -11.64531 -11.61846 -11.50692 -11.37331 -10.86159 -10.62111 -10.30708 -9.75510 -9.35565 -8.89644 -8.18682 -5.59179 -0.46290 0.52469 0.95396 1.29079 1.40732 1.42267 1.51372 2.01173 2.17984 2.39869 3.07110 3.31022 3.72742 3.83208 3.89463 4.00198 4.02601 4.08138 4.28137 4.29789 4.30038 4.39482 4.44806 4.62527 4.65702 4.71068 4.77301 4.78590 4.90488 4.94519 4.96741 5.00751 5.03677 5.06395 5.16042 5.18224 5.21913 5.32704 5.36233 5.39456 5.49843 5.70611 5.84905 6.09530 6.46000 6.88135 7.17113 7.56471 7.95773 9.01844 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.018067 B = 0.003437 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.420301 B = 8145.139172 C = 9039.782841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.077 4.077 3 C -0.133 4.133 4 C -0.013 4.013 5 C -0.156 4.156 6 C -0.212 4.212 7 S 0.236 5.764 8 C -0.311 4.311 9 C 0.583 3.417 10 O -0.566 6.566 11 N -0.706 5.706 12 C 0.139 3.861 13 H 0.057 0.943 14 C -0.107 4.107 15 C -0.125 4.125 16 C 0.110 3.890 17 N -0.617 5.617 18 C -0.258 4.258 19 H 0.032 0.968 20 C -0.036 4.036 21 N -0.963 5.963 22 Si 0.965 3.035 23 H -0.264 1.264 24 H -0.311 1.311 25 H -0.255 1.255 26 C 0.146 3.854 27 H 0.061 0.939 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.165 0.835 35 H 0.204 0.796 36 H 0.410 0.590 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.049 0.951 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.264 0.736 44 H 0.028 0.972 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.559 -0.848 26.501 29.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.098 4.098 3 C -0.190 4.190 4 C -0.030 4.030 5 C -0.187 4.187 6 C -0.349 4.349 7 S 0.505 5.495 8 C -0.431 4.431 9 C 0.371 3.629 10 O -0.447 6.447 11 N -0.357 5.357 12 C 0.033 3.967 13 H 0.075 0.925 14 C -0.145 4.145 15 C -0.165 4.165 16 C -0.014 4.014 17 N -0.342 5.342 18 C -0.388 4.388 19 H 0.050 0.950 20 C -0.230 4.230 21 N -0.609 5.609 22 Si 0.793 3.207 23 H -0.190 1.190 24 H -0.240 1.240 25 H -0.179 1.179 26 C 0.020 3.980 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.094 0.906 34 H 0.182 0.818 35 H 0.221 0.779 36 H 0.247 0.753 37 H 0.106 0.894 38 H 0.110 0.890 39 H 0.068 0.932 40 H 0.119 0.881 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.047 0.953 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -11.810 -1.755 26.279 28.864 hybrid contribution -0.037 1.151 -1.097 1.591 sum -11.847 -0.604 25.181 27.836 Atomic orbital electron populations 1.21728 0.92706 1.01553 1.02843 1.20374 0.97157 0.96412 0.95824 1.21725 1.00042 0.94447 1.02799 1.19706 0.93357 0.93010 0.96881 1.19991 1.04786 1.04026 0.89874 1.25709 1.02498 1.00759 1.05960 1.82672 1.42076 1.31773 0.92949 1.24351 1.12374 1.08270 0.98096 1.17451 0.78817 0.78852 0.87785 1.90740 1.62408 1.61758 1.29833 1.45766 1.39952 1.40043 1.09977 1.21321 0.94851 0.94467 0.86035 0.92476 1.21664 1.01598 0.92929 0.98284 1.21919 0.97948 0.99506 0.97082 1.21617 0.96437 0.84069 0.99236 1.44325 1.69841 1.10595 1.09471 1.18756 1.04856 1.19808 0.95331 0.94983 1.26120 1.00452 1.00655 0.95819 1.69959 1.32292 1.52007 1.06654 0.85661 0.77867 0.78359 0.78850 1.19045 1.23970 1.17885 1.21261 0.93168 0.94491 0.89120 0.91982 0.93667 0.90557 0.89975 0.94595 0.91954 0.90553 0.81770 0.77922 0.75317 0.89392 0.89021 0.93171 0.88120 0.93061 0.93648 0.92749 0.95292 0.94097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.63 8.98 71.98 0.65 -1.98 16 2 C -0.08 -1.99 3.07 -11.54 -0.04 -2.02 16 3 C -0.13 -2.99 9.09 71.98 0.65 -2.33 16 4 C -0.01 -0.31 4.72 -20.42 -0.10 -0.41 16 5 C -0.16 -2.50 9.18 21.08 0.19 -2.30 16 6 C -0.21 -2.59 10.92 66.82 0.73 -1.86 16 7 S 0.24 3.56 22.17 -56.49 -1.25 2.31 16 8 C -0.31 -7.86 6.45 24.08 0.16 -7.71 16 9 C 0.58 19.09 7.73 86.42 0.67 19.76 16 10 O -0.57 -23.97 13.66 -4.34 -0.06 -24.03 16 11 N -0.71 -19.90 5.08 -446.21 -2.27 -22.16 16 12 C 0.14 4.79 2.60 45.07 0.12 4.91 16 13 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 14 C -0.11 -2.79 5.35 30.62 0.16 -2.63 16 15 C -0.13 -3.91 6.08 30.67 0.19 -3.73 16 16 C 0.11 4.57 4.17 86.36 0.36 4.93 16 17 N -0.62 -30.69 2.74 -699.08 -1.91 -32.61 16 18 C -0.26 -15.80 10.04 84.03 0.84 -14.95 16 19 H 0.03 2.24 8.06 -2.91 -0.02 2.22 16 20 C -0.04 -2.20 5.30 84.86 0.45 -1.75 16 21 N -0.96 -63.28 13.97 21.65 0.30 -62.98 16 22 Si 0.97 47.32 24.29 68.60 1.67 48.98 16 23 H -0.26 -11.89 6.61 99.48 0.66 -11.24 16 24 H -0.31 -15.47 7.11 99.48 0.71 -14.76 16 25 H -0.25 -11.71 6.45 99.48 0.64 -11.07 16 26 C 0.15 6.27 6.09 86.36 0.53 6.80 16 27 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 28 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.08 1.13 7.49 -2.39 -0.02 1.11 16 30 H 0.08 2.86 4.95 -2.39 -0.01 2.85 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.29 8.01 -2.39 -0.02 1.27 16 34 H 0.16 1.84 7.65 -2.91 -0.02 1.82 16 35 H 0.20 1.01 8.06 -2.91 -0.02 0.99 16 36 H 0.41 8.37 7.73 -92.71 -0.72 7.66 16 37 H 0.09 1.91 8.14 -2.38 -0.02 1.89 16 38 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 41 H 0.05 2.35 4.58 -2.39 -0.01 2.34 16 42 H 0.05 1.74 6.87 -2.39 -0.02 1.72 16 43 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 44 H 0.03 1.43 7.93 -2.39 -0.02 1.41 16 45 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -79.97 362.38 2.20 -77.77 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.16 Total: 18.00 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: 5.56 Total: -5.28 kcal Atomic # 7 Polarization: -113.87 SS G_CDS: -3.88 Total: -117.75 kcal Atomic # 8 Polarization: -23.97 SS G_CDS: -0.06 Total: -24.03 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 1.67 Total: 48.98 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.25 Total: 2.31 kcal Total: -79.97 2.20 -77.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009607087.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.566 kcal (2) G-P(sol) polarization free energy of solvation -79.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds