Wall clock time and date at job start Tue Mar 31 2020 13:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47278 * 2 1 4 4 C 1.50703 * 109.47240 * 120.00072 * 2 1 3 5 5 C 1.37479 * 123.34933 * 294.40187 * 4 2 1 6 6 C 1.33813 * 115.09583 * 180.29507 * 5 4 2 7 7 S 1.70616 * 110.95819 * 359.71969 * 6 5 4 8 8 C 1.36648 * 123.35423 * 114.17769 * 4 2 1 9 9 C 1.46586 * 125.45568 * 359.97438 * 8 4 2 10 10 O 1.21703 * 120.00006 * 5.78741 * 9 8 4 11 11 N 1.34775 * 120.00079 * 185.77985 * 9 8 4 12 12 C 1.46497 * 120.00246 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.49955 * 35.05920 * 12 11 9 14 14 C 1.53037 * 109.52637 * 155.11592 * 12 11 9 15 15 C 1.53040 * 109.53612 * 181.29816 * 14 12 11 16 16 C 1.53187 * 109.34179 * 298.67956 * 15 14 12 17 17 N 1.46931 * 108.77640 * 54.62197 * 16 15 14 18 18 C 1.36934 * 120.62921 * 126.41287 * 17 16 15 19 19 H 1.08001 * 119.99414 * 211.39866 * 18 17 16 20 20 C 1.38809 * 120.00280 * 31.39380 * 18 17 16 21 21 N 1.31621 * 119.99674 * 10.65185 * 20 18 17 22 22 Si 1.86797 * 120.00032 * 190.64565 * 20 18 17 23 23 H 1.48494 * 109.47385 * 90.00538 * 22 20 18 24 24 H 1.48504 * 109.47274 * 210.00451 * 22 20 18 25 25 H 1.48504 * 109.47205 * 330.00398 * 22 20 18 26 26 C 1.46926 * 118.73473 * 306.39319 * 17 16 15 27 27 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47074 * 300.00060 * 1 2 3 29 29 H 1.08997 * 109.47318 * 60.00042 * 1 2 3 30 30 H 1.09002 * 109.47074 * 239.99940 * 2 1 3 31 31 H 1.09003 * 109.47639 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47187 * 299.99823 * 3 2 1 33 33 H 1.09002 * 109.47117 * 59.99966 * 3 2 1 34 34 H 1.07994 * 122.44974 * 359.97438 * 5 4 2 35 35 H 1.08002 * 124.52363 * 179.74890 * 6 5 4 36 36 H 0.97001 * 119.99450 * 0.02562 * 11 9 8 37 37 H 1.08995 * 109.43077 * 61.29418 * 14 12 11 38 38 H 1.09000 * 109.48198 * 301.33244 * 14 12 11 39 39 H 1.09007 * 109.49116 * 178.71396 * 15 14 12 40 40 H 1.09003 * 109.50234 * 58.65427 * 15 14 12 41 41 H 1.08999 * 109.58497 * 174.41038 * 16 15 14 42 42 H 1.09003 * 109.58833 * 294.69513 * 16 15 14 43 43 H 0.96997 * 119.99329 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.58365 * 173.39297 * 26 17 16 45 45 H 1.09003 * 109.58609 * 293.81854 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.8370 -0.2401 2.5074 6 6 2.3586 -0.9994 3.4780 7 16 3.1307 -2.3751 2.8281 8 6 2.7236 -1.8885 1.1883 9 6 3.0742 -2.6254 -0.0293 10 8 2.8387 -2.1432 -1.1216 11 7 3.6576 -3.8370 0.0607 12 6 4.0086 -4.5734 -1.1561 13 1 4.3235 -3.8713 -1.9281 14 6 5.1510 -5.5458 -0.8540 15 6 5.5396 -6.2919 -2.1325 16 6 4.3377 -7.0981 -2.6346 17 7 3.1918 -6.1917 -2.7897 18 6 2.5116 -6.1237 -3.9762 19 1 2.0544 -5.1949 -4.2840 20 6 2.4100 -7.2483 -4.7835 21 7 2.7792 -8.4246 -4.3227 22 14 1.7493 -7.0922 -6.5237 23 1 2.8729 -6.8287 -7.4581 24 1 1.0698 -8.3548 -6.9104 25 1 0.7797 -5.9691 -6.5862 26 6 2.7893 -5.3601 -1.6473 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.3061 0.6778 2.7120 35 1 2.2985 -0.7722 4.5321 36 1 3.8451 -4.2215 0.9314 37 1 4.8271 -6.2625 -0.0995 38 1 6.0120 -4.9907 -0.4815 39 1 6.3685 -6.9677 -1.9215 40 1 5.8407 -5.5740 -2.8955 41 1 4.5779 -7.5513 -3.5964 42 1 4.0941 -7.8784 -1.9136 43 1 2.7078 -9.2105 -4.8867 44 1 2.0077 -4.6666 -1.9576 45 1 2.4178 -5.9971 -0.8445 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009607094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:52 Heat of formation + Delta-G solvation = 3.226009 kcal Electronic energy + Delta-G solvation = -25365.683809 eV Core-core repulsion = 21895.774888 eV Total energy + Delta-G solvation = -3469.908921 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.01648 -38.54357 -37.11105 -34.41038 -34.03741 -32.44654 -30.45607 -30.14865 -28.32726 -27.14655 -25.26830 -24.88282 -22.51470 -22.07678 -21.71441 -20.71763 -19.66086 -18.51756 -17.71085 -16.72747 -16.26173 -15.62740 -15.17974 -14.95562 -14.62858 -14.22177 -14.02542 -13.66636 -13.63775 -13.55462 -13.31099 -13.06237 -12.75288 -12.55832 -12.38860 -12.33269 -12.14667 -11.80358 -11.58270 -11.15917 -11.10249 -10.95491 -10.84994 -10.80638 -10.76547 -10.25786 -10.19073 -9.90116 -9.80451 -9.64795 -9.36980 -9.00652 -8.75820 -8.59821 -8.40284 -6.59618 -5.75421 -3.23435 0.42381 1.34984 1.73656 2.28501 3.27221 3.37339 3.41380 3.47526 3.50486 4.52966 4.65279 4.81034 4.91571 5.02948 5.20579 5.25610 5.31432 5.41408 5.52484 5.55694 5.58543 5.60356 5.64390 5.73629 5.79490 5.87940 5.99613 6.06690 6.09948 6.15573 6.22090 6.25279 6.25849 6.51160 6.58264 6.64030 6.71406 6.75273 6.87086 7.00982 7.39603 7.68921 7.70503 7.85118 8.37881 8.51907 9.25928 9.86058 10.43418 11.32875 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.003432 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.612659 B = 8157.345428 C = 9333.979702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.070 4.070 3 C -0.137 4.137 4 C -0.014 4.014 5 C -0.142 4.142 6 C -0.233 4.233 7 S 0.187 5.813 8 C -0.262 4.262 9 C 0.588 3.412 10 O -0.519 6.519 11 N -0.717 5.717 12 C 0.127 3.873 13 H 0.088 0.912 14 C -0.115 4.115 15 C -0.140 4.140 16 C 0.168 3.832 17 N -0.587 5.587 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.004 3.996 21 N -0.907 5.907 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.278 1.278 26 C 0.142 3.858 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.124 0.876 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.050 0.950 34 H 0.142 0.858 35 H 0.166 0.834 36 H 0.391 0.609 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.090 0.910 42 H 0.019 0.981 43 H 0.253 0.747 44 H 0.058 0.942 45 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.742 14.584 16.971 22.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.090 4.090 3 C -0.195 4.195 4 C -0.029 4.029 5 C -0.173 4.173 6 C -0.371 4.371 7 S 0.455 5.545 8 C -0.382 4.382 9 C 0.374 3.626 10 O -0.398 6.398 11 N -0.367 5.367 12 C 0.022 3.978 13 H 0.106 0.894 14 C -0.154 4.154 15 C -0.179 4.179 16 C 0.042 3.958 17 N -0.310 5.310 18 C -0.380 4.380 19 H 0.083 0.917 20 C -0.194 4.194 21 N -0.551 5.551 22 Si 0.735 3.265 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.203 1.203 26 C 0.015 3.985 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.142 0.858 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.160 0.840 35 H 0.184 0.816 36 H 0.225 0.775 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.108 0.892 42 H 0.037 0.963 43 H 0.064 0.936 44 H 0.077 0.923 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.349 13.483 16.742 21.624 hybrid contribution -1.045 1.058 -0.647 1.622 sum 1.304 14.541 16.094 21.729 Atomic orbital electron populations 1.21760 0.94263 1.02030 1.01425 1.20435 0.95841 0.95857 0.96848 1.21778 1.01101 0.95128 1.01488 1.19497 0.94919 0.92525 0.95913 1.19868 1.04006 1.02339 0.91114 1.25190 1.06404 1.01061 1.04406 1.82965 1.52408 1.22439 0.96647 1.24553 1.13533 1.03051 0.97077 1.16912 0.77707 0.80882 0.87147 1.90724 1.53771 1.67819 1.27457 1.46061 1.61967 1.18365 1.10288 1.21805 0.97296 0.93507 0.85224 0.89351 1.21686 0.96634 0.97719 0.99319 1.22195 1.00289 0.99574 0.95886 1.20849 0.83839 0.90086 1.00988 1.43958 1.32121 1.46065 1.08864 1.19231 1.29211 0.94351 0.95210 0.91654 1.25146 0.99888 0.94902 0.99465 1.69981 1.51804 0.97836 1.35490 0.86236 0.78723 0.76961 0.84549 1.21376 1.21708 1.20331 1.21196 0.93546 0.93098 0.90695 0.92546 0.93147 0.92137 0.85800 0.92745 0.92187 0.93094 0.84036 0.81601 0.77540 0.92228 0.93068 0.92715 0.92428 0.89157 0.96322 0.93649 0.92302 0.96488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.09 37.16 0.34 -1.19 16 2 C -0.07 -0.87 3.07 -91.77 -0.28 -1.15 16 3 C -0.14 -1.41 8.98 37.15 0.33 -1.07 16 4 C -0.01 -0.17 4.72 -105.47 -0.50 -0.67 16 5 C -0.14 -1.39 9.19 -41.41 -0.38 -1.77 16 6 C -0.23 -2.02 10.92 29.18 0.32 -1.70 16 7 S 0.19 1.81 22.18 -107.50 -2.38 -0.58 16 8 C -0.26 -3.49 6.45 -36.79 -0.24 -3.73 16 9 C 0.59 9.60 7.73 -12.89 -0.10 9.50 16 10 O -0.52 -10.19 13.66 5.19 0.07 -10.12 16 11 N -0.72 -10.95 5.07 -55.03 -0.28 -11.23 16 12 C 0.13 2.32 2.60 -67.81 -0.18 2.14 16 13 H 0.09 1.83 7.58 -51.93 -0.39 1.43 16 14 C -0.12 -1.89 5.36 -26.69 -0.14 -2.03 16 15 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 16 C 0.17 3.99 5.25 -3.71 -0.02 3.97 16 17 N -0.59 -15.06 2.99 -172.31 -0.51 -15.57 16 18 C -0.25 -7.08 9.58 -15.06 -0.14 -7.22 16 19 H 0.07 1.86 7.85 -52.49 -0.41 1.45 16 20 C 0.00 0.12 5.05 -17.43 -0.09 0.03 16 21 N -0.91 -26.42 11.05 55.49 0.61 -25.80 16 22 Si 0.91 22.17 29.57 -169.99 -5.03 17.14 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.14 3.15 6.09 -3.71 -0.02 3.13 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.47 8.01 -51.93 -0.42 0.05 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.12 1.95 4.96 -51.93 -0.26 1.69 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.43 7.49 -51.93 -0.39 0.05 16 34 H 0.14 1.12 7.65 -52.49 -0.40 0.71 16 35 H 0.17 0.98 8.06 -52.49 -0.42 0.56 16 36 H 0.39 4.89 7.74 -40.82 -0.32 4.58 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.05 0.90 8.14 -51.92 -0.42 0.48 16 40 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.09 2.41 6.11 -51.93 -0.32 2.09 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 44 H 0.06 1.40 7.93 -51.93 -0.41 0.98 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 369.11 15.07 5.56 5.56 Total: -1.00 -31.32 369.11 -10.32 -41.64 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -7.10 Total: 3.51 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.26 Total: -4.54 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.18 Total: -52.61 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.07 Total: -10.12 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.03 Total: 17.14 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.38 Total: -0.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.32 -10.32 -41.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009607094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.861 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds