Wall clock time and date at job start Tue Mar 31 2020 13:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47278 * 2 1 4 4 C 1.50703 * 109.47240 * 120.00072 * 2 1 3 5 5 C 1.37479 * 123.34933 * 294.40187 * 4 2 1 6 6 C 1.33813 * 115.09583 * 180.29507 * 5 4 2 7 7 S 1.70616 * 110.95819 * 359.71969 * 6 5 4 8 8 C 1.36648 * 123.35423 * 114.17769 * 4 2 1 9 9 C 1.46586 * 125.45568 * 359.97438 * 8 4 2 10 10 O 1.21703 * 120.00006 * 5.78741 * 9 8 4 11 11 N 1.34775 * 120.00079 * 185.77985 * 9 8 4 12 12 C 1.46497 * 120.00246 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.49955 * 35.05920 * 12 11 9 14 14 C 1.53037 * 109.52637 * 155.11592 * 12 11 9 15 15 C 1.53040 * 109.53612 * 181.29816 * 14 12 11 16 16 C 1.53187 * 109.34179 * 298.67956 * 15 14 12 17 17 N 1.46931 * 108.77640 * 54.62197 * 16 15 14 18 18 C 1.36934 * 120.62921 * 126.41287 * 17 16 15 19 19 H 1.08001 * 119.99414 * 211.39866 * 18 17 16 20 20 C 1.38809 * 120.00280 * 31.39380 * 18 17 16 21 21 N 1.31621 * 119.99674 * 10.65185 * 20 18 17 22 22 Si 1.86797 * 120.00032 * 190.64565 * 20 18 17 23 23 H 1.48494 * 109.47385 * 90.00538 * 22 20 18 24 24 H 1.48504 * 109.47274 * 210.00451 * 22 20 18 25 25 H 1.48504 * 109.47205 * 330.00398 * 22 20 18 26 26 C 1.46926 * 118.73473 * 306.39319 * 17 16 15 27 27 H 1.09000 * 109.46951 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47074 * 300.00060 * 1 2 3 29 29 H 1.08997 * 109.47318 * 60.00042 * 1 2 3 30 30 H 1.09002 * 109.47074 * 239.99940 * 2 1 3 31 31 H 1.09003 * 109.47639 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47187 * 299.99823 * 3 2 1 33 33 H 1.09002 * 109.47117 * 59.99966 * 3 2 1 34 34 H 1.07994 * 122.44974 * 359.97438 * 5 4 2 35 35 H 1.08002 * 124.52363 * 179.74890 * 6 5 4 36 36 H 0.97001 * 119.99450 * 0.02562 * 11 9 8 37 37 H 1.08995 * 109.43077 * 61.29418 * 14 12 11 38 38 H 1.09000 * 109.48198 * 301.33244 * 14 12 11 39 39 H 1.09007 * 109.49116 * 178.71396 * 15 14 12 40 40 H 1.09003 * 109.50234 * 58.65427 * 15 14 12 41 41 H 1.08999 * 109.58497 * 174.41038 * 16 15 14 42 42 H 1.09003 * 109.58833 * 294.69513 * 16 15 14 43 43 H 0.96997 * 119.99329 * 179.97438 * 21 20 18 44 44 H 1.09000 * 109.58365 * 173.39297 * 26 17 16 45 45 H 1.09003 * 109.58609 * 293.81854 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 1.8370 -0.2401 2.5074 6 6 2.3586 -0.9994 3.4780 7 16 3.1307 -2.3751 2.8281 8 6 2.7236 -1.8885 1.1883 9 6 3.0742 -2.6254 -0.0293 10 8 2.8387 -2.1432 -1.1216 11 7 3.6576 -3.8370 0.0607 12 6 4.0086 -4.5734 -1.1561 13 1 4.3235 -3.8713 -1.9281 14 6 5.1510 -5.5458 -0.8540 15 6 5.5396 -6.2919 -2.1325 16 6 4.3377 -7.0981 -2.6346 17 7 3.1918 -6.1917 -2.7897 18 6 2.5116 -6.1237 -3.9762 19 1 2.0544 -5.1949 -4.2840 20 6 2.4100 -7.2483 -4.7835 21 7 2.7792 -8.4246 -4.3227 22 14 1.7493 -7.0922 -6.5237 23 1 2.8729 -6.8287 -7.4581 24 1 1.0698 -8.3548 -6.9104 25 1 0.7797 -5.9691 -6.5862 26 6 2.7893 -5.3601 -1.6473 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.3061 0.6778 2.7120 35 1 2.2985 -0.7722 4.5321 36 1 3.8451 -4.2215 0.9314 37 1 4.8271 -6.2625 -0.0995 38 1 6.0120 -4.9907 -0.4815 39 1 6.3685 -6.9677 -1.9215 40 1 5.8407 -5.5740 -2.8955 41 1 4.5779 -7.5513 -3.5964 42 1 4.0941 -7.8784 -1.9136 43 1 2.7078 -9.2105 -4.8867 44 1 2.0077 -4.6666 -1.9576 45 1 2.4178 -5.9971 -0.8445 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009607094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:33:51 Heat of formation + Delta-G solvation = -15.446029 kcal Electronic energy + Delta-G solvation = -25366.493490 eV Core-core repulsion = 21895.774888 eV Total energy + Delta-G solvation = -3470.718602 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.22462 -39.69577 -38.61652 -35.98172 -34.98988 -34.18462 -32.35046 -31.37977 -29.68919 -28.00010 -27.28384 -25.86704 -23.94887 -23.79115 -22.65264 -22.02195 -21.24651 -19.73478 -18.81047 -18.53799 -17.29969 -16.98473 -16.72598 -16.30571 -16.11253 -15.65322 -15.27737 -15.16222 -14.93959 -14.69619 -14.45136 -14.35846 -14.21010 -14.04255 -13.55708 -13.41944 -13.32329 -13.01587 -12.95316 -12.78837 -12.59319 -12.38004 -12.16105 -12.05670 -12.03777 -11.98031 -11.71794 -11.62254 -11.52135 -11.35818 -10.64272 -10.61645 -10.26098 -9.74467 -9.36103 -8.66071 -7.91112 -5.43016 -0.45522 0.52885 0.96268 1.42684 1.43835 1.44380 1.54196 2.03561 2.19336 2.48817 3.23879 3.65969 3.76918 3.85947 3.92340 4.04729 4.07813 4.22378 4.28920 4.31171 4.45133 4.45607 4.53406 4.71357 4.77843 4.78713 4.79589 4.89664 4.95768 4.98908 5.04346 5.09422 5.12089 5.18381 5.22727 5.24716 5.37387 5.40128 5.42833 5.53715 5.61308 5.71748 5.76704 6.37699 6.47352 7.12101 7.17638 7.79736 8.31366 9.13957 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016166 B = 0.003432 C = 0.002999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.612659 B = 8157.345428 C = 9333.979702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.077 4.077 3 C -0.131 4.131 4 C -0.013 4.013 5 C -0.156 4.156 6 C -0.211 4.211 7 S 0.230 5.770 8 C -0.310 4.310 9 C 0.583 3.417 10 O -0.565 6.565 11 N -0.707 5.707 12 C 0.143 3.857 13 H 0.061 0.939 14 C -0.105 4.105 15 C -0.129 4.129 16 C 0.173 3.827 17 N -0.607 5.607 18 C -0.270 4.270 19 H 0.051 0.949 20 C -0.041 4.041 21 N -0.930 5.930 22 Si 0.968 3.032 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.146 3.854 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.166 0.834 35 H 0.204 0.796 36 H 0.408 0.592 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.005 0.995 43 H 0.253 0.747 44 H 0.029 0.971 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 15.922 20.005 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.097 4.097 3 C -0.188 4.188 4 C -0.029 4.029 5 C -0.186 4.186 6 C -0.349 4.349 7 S 0.498 5.502 8 C -0.430 4.430 9 C 0.372 3.628 10 O -0.446 6.446 11 N -0.358 5.358 12 C 0.037 3.963 13 H 0.079 0.921 14 C -0.143 4.143 15 C -0.169 4.169 16 C 0.048 3.952 17 N -0.331 5.331 18 C -0.401 4.401 19 H 0.069 0.931 20 C -0.237 4.237 21 N -0.575 5.575 22 Si 0.796 3.204 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.201 1.201 26 C 0.019 3.981 27 H 0.054 0.946 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.183 0.817 35 H 0.221 0.779 36 H 0.244 0.756 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.023 0.977 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 2.958 14.821 19.829 24.932 hybrid contribution -1.281 0.674 -1.499 2.084 sum 1.677 15.495 18.330 24.061 Atomic orbital electron populations 1.21723 0.93374 1.01067 1.02831 1.20376 0.96637 0.96921 0.95758 1.21729 1.00456 0.93770 1.02873 1.19725 0.94117 0.92100 0.96958 1.20002 1.05075 1.03665 0.89867 1.25703 1.03698 0.99518 1.05980 1.82764 1.51594 1.22431 0.93368 1.24354 1.16508 1.04156 0.98000 1.17428 0.76694 0.80867 0.87847 1.90715 1.55418 1.68868 1.29649 1.45821 1.61916 1.18077 1.10000 1.21305 0.96054 0.92985 0.85930 0.92112 1.21627 0.96856 0.97470 0.98383 1.22027 0.98712 0.99417 0.96726 1.20719 0.85217 0.90245 0.99060 1.44179 1.32940 1.46880 1.09056 1.19392 1.29767 0.94080 0.96818 0.93102 1.25841 1.00328 0.94497 1.02996 1.70122 1.52535 0.98238 1.36631 0.85265 0.78185 0.76891 0.80078 1.20691 1.21284 1.20061 1.21195 0.94793 0.92393 0.89691 0.94648 0.90635 0.91792 0.89826 0.93675 0.91845 0.90627 0.81657 0.77937 0.75586 0.90605 0.89451 0.89557 0.93376 0.92528 0.97705 0.93790 0.95269 0.96318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.09 71.98 0.65 -2.27 16 2 C -0.08 -1.94 3.07 -11.54 -0.04 -1.98 16 3 C -0.13 -2.57 8.98 71.98 0.65 -1.92 16 4 C -0.01 -0.31 4.72 -20.41 -0.10 -0.40 16 5 C -0.16 -2.55 9.19 21.08 0.19 -2.36 16 6 C -0.21 -2.76 10.92 66.81 0.73 -2.03 16 7 S 0.23 3.78 22.18 -56.49 -1.25 2.53 16 8 C -0.31 -8.13 6.45 24.08 0.16 -7.97 16 9 C 0.58 19.72 7.73 86.42 0.67 20.38 16 10 O -0.57 -23.89 13.66 -4.36 -0.06 -23.95 16 11 N -0.71 -21.61 5.07 -446.22 -2.26 -23.87 16 12 C 0.14 5.33 2.60 45.07 0.12 5.45 16 13 H 0.06 2.62 7.58 -2.39 -0.02 2.61 16 14 C -0.11 -3.25 5.36 30.62 0.16 -3.09 16 15 C -0.13 -4.74 6.08 30.67 0.19 -4.55 16 16 C 0.17 8.42 5.25 86.36 0.45 8.87 16 17 N -0.61 -32.47 2.99 -699.08 -2.09 -34.55 16 18 C -0.27 -16.01 9.58 84.03 0.81 -15.21 16 19 H 0.05 3.08 7.85 -2.91 -0.02 3.06 16 20 C -0.04 -2.36 5.05 84.86 0.43 -1.93 16 21 N -0.93 -55.75 11.05 21.65 0.24 -55.52 16 22 Si 0.97 46.80 29.57 68.60 2.03 48.83 16 23 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 25 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 26 C 0.15 6.79 6.09 86.36 0.53 7.31 16 27 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.07 1.26 8.01 -2.39 -0.02 1.24 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.08 2.86 4.96 -2.39 -0.01 2.84 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.09 7.49 -2.39 -0.02 1.08 16 34 H 0.17 1.88 7.65 -2.91 -0.02 1.86 16 35 H 0.20 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.41 9.60 7.74 -92.71 -0.72 8.88 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 40 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.06 3.12 6.11 -2.39 -0.01 3.11 16 42 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 43 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 44 H 0.03 1.48 7.93 -2.39 -0.02 1.46 16 45 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -73.33 369.11 2.47 -70.86 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.27 Total: 17.36 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 5.60 Total: -1.70 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -4.11 Total: -113.94 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.06 Total: -23.95 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 2.03 Total: 48.83 kcal Atomic # 16 Polarization: 3.78 SS G_CDS: -1.25 Total: 2.53 kcal Total: -73.33 2.47 -70.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009607094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.416 kcal (2) G-P(sol) polarization free energy of solvation -73.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds