Wall clock time and date at job start Tue Mar 31 2020 13:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47417 * 2 1 4 4 C 1.50699 * 109.46839 * 119.99775 * 2 1 3 5 5 C 1.33823 * 124.51678 * 119.72609 * 4 2 1 6 6 C 1.37479 * 115.09556 * 180.26628 * 5 4 2 7 7 C 1.36647 * 113.30021 * 359.97438 * 6 5 4 8 8 C 1.46575 * 125.46017 * 179.97438 * 7 6 5 9 9 O 1.21706 * 120.00331 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00028 * 180.02562 * 8 7 6 11 11 C 1.46509 * 119.99801 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.49575 * 325.00139 * 11 10 8 13 13 C 1.53041 * 109.49268 * 204.94021 * 11 10 8 14 14 C 1.53045 * 109.53342 * 178.71686 * 13 11 10 15 15 C 1.53196 * 109.34120 * 61.31603 * 14 13 11 16 16 N 1.46927 * 108.77385 * 305.38083 * 15 14 13 17 17 C 1.36933 * 120.62877 * 233.58728 * 16 15 14 18 18 H 1.08004 * 120.00078 * 152.30790 * 17 16 15 19 19 C 1.38816 * 120.00251 * 332.30438 * 17 16 15 20 20 N 1.31626 * 119.99523 * 342.60223 * 19 17 16 21 21 Si 1.86801 * 120.00063 * 162.60014 * 19 17 16 22 22 H 1.48493 * 109.47049 * 94.35353 * 21 19 17 23 23 H 1.48503 * 109.46953 * 214.34929 * 21 19 17 24 24 H 1.48491 * 109.47019 * 334.35011 * 21 19 17 25 25 C 1.46932 * 118.74098 * 53.60693 * 16 15 14 26 26 S 1.70612 * 124.52495 * 300.02126 * 4 2 1 27 27 H 1.08996 * 109.47189 * 300.00230 * 1 2 3 28 28 H 1.09000 * 109.46712 * 59.99865 * 1 2 3 29 29 H 1.09000 * 109.46965 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47189 * 239.99770 * 2 1 3 31 31 H 1.08996 * 109.47129 * 59.99733 * 3 2 1 32 32 H 1.08998 * 109.47510 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47290 * 299.99781 * 3 2 1 34 34 H 1.07991 * 122.45704 * 0.23813 * 5 4 2 35 35 H 1.08006 * 123.34868 * 179.97438 * 6 5 4 36 36 H 0.96996 * 119.99977 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.45626 * 298.69765 * 13 11 10 38 38 H 1.08990 * 109.46332 * 58.66392 * 13 11 10 39 39 H 1.08994 * 109.47066 * 301.35938 * 14 13 11 40 40 H 1.09000 * 109.51920 * 181.29568 * 14 13 11 41 41 H 1.08991 * 109.58821 * 185.59264 * 15 14 13 42 42 H 1.08996 * 109.58605 * 65.16376 * 15 14 13 43 43 H 0.97001 * 119.99419 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58569 * 186.60624 * 25 16 15 45 45 H 1.08992 * 109.69856 * 66.24899 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8005 -1.8060 1.2131 6 6 3.1426 -2.2980 2.4505 7 6 2.6282 -1.5668 3.4839 8 6 2.8247 -1.8524 4.9081 9 8 3.4943 -2.8094 5.2502 10 7 2.2637 -1.0552 5.8389 11 6 2.4597 -1.3411 7.2624 12 1 2.4950 -2.4197 7.4154 13 6 1.3000 -0.7489 8.0666 14 6 1.4872 -1.0745 9.5502 15 6 2.7923 -0.4448 10.0471 16 7 3.8936 -0.8976 9.1863 17 6 5.0087 -1.4790 9.7281 18 1 5.5833 -2.1876 9.1499 19 6 5.4008 -1.1578 11.0204 20 7 4.9327 -0.0723 11.5994 21 14 6.5925 -2.2659 11.9377 22 1 7.9771 -1.7608 11.7568 23 1 6.2520 -2.2699 13.3831 24 1 6.4956 -3.6475 11.4024 25 6 3.7758 -0.7144 7.7333 26 16 1.6915 -0.2293 2.8315 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 3.1274 -2.2700 0.2945 35 1 3.7567 -3.1751 2.5916 36 1 1.7297 -0.2928 5.5664 37 1 1.2800 0.3326 7.9324 38 1 0.3601 -1.1756 7.7165 39 1 1.5315 -2.1555 9.6822 40 1 0.6493 -0.6725 10.1198 41 1 2.9801 -0.7558 11.0747 42 1 2.7149 0.6414 10.0002 43 1 5.2063 0.1520 12.5026 44 1 4.6125 -1.2034 7.2343 45 1 3.7797 0.3493 7.4956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009668284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:10 Heat of formation + Delta-G solvation = -0.534507 kcal Electronic energy + Delta-G solvation = -24690.105817 eV Core-core repulsion = 21220.033828 eV Total energy + Delta-G solvation = -3470.071990 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.72743 -38.41862 -37.25127 -35.34308 -34.30098 -32.42972 -30.45589 -29.78617 -28.22494 -27.58907 -25.27094 -25.08329 -22.49185 -22.07625 -21.58234 -20.72656 -19.79211 -19.00278 -17.80565 -16.77798 -16.25704 -15.56082 -15.11702 -14.91389 -14.75975 -14.61349 -14.13907 -13.99292 -13.84860 -13.43199 -13.36674 -13.11044 -12.82773 -12.47896 -12.40869 -12.37678 -12.29135 -11.81936 -11.69908 -11.56980 -11.52566 -11.08067 -10.91617 -10.88891 -10.75181 -10.24984 -10.22991 -10.01937 -9.88428 -9.62903 -9.58170 -8.93732 -8.75569 -8.71993 -8.37534 -6.65060 -5.76058 -3.17702 0.39724 1.29136 1.73052 2.29091 3.29896 3.36924 3.41520 3.48303 3.53280 4.19903 4.47711 4.54428 4.69418 4.88122 4.98317 5.18649 5.18870 5.29343 5.30902 5.39104 5.39865 5.41979 5.55044 5.57953 5.62827 5.72345 5.75319 5.80059 5.87519 6.01625 6.09216 6.15656 6.21151 6.25372 6.53149 6.62120 6.66230 6.70705 6.85309 7.00104 7.37595 7.66378 7.68629 7.85986 8.36381 8.48906 9.24728 9.87010 10.42697 11.32791 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.002684 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.985917 B =10430.579686 C =10890.294824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.027 4.027 3 C -0.150 4.150 4 C -0.192 4.192 5 C -0.152 4.152 6 C -0.058 4.058 7 C -0.258 4.258 8 C 0.585 3.415 9 O -0.524 6.524 10 N -0.718 5.718 11 C 0.126 3.874 12 H 0.089 0.911 13 C -0.115 4.115 14 C -0.139 4.139 15 C 0.167 3.833 16 N -0.587 5.587 17 C -0.249 4.249 18 H 0.067 0.933 19 C 0.001 3.999 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.142 3.858 26 S 0.199 5.801 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.142 0.858 35 H 0.153 0.847 36 H 0.391 0.609 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.055 0.945 41 H 0.090 0.910 42 H 0.019 0.981 43 H 0.253 0.747 44 H 0.058 0.942 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.710 2.490 -22.865 25.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.047 4.047 3 C -0.207 4.207 4 C -0.311 4.311 5 C -0.182 4.182 6 C -0.091 4.091 7 C -0.379 4.379 8 C 0.370 3.630 9 O -0.402 6.402 10 N -0.368 5.368 11 C 0.021 3.979 12 H 0.107 0.893 13 C -0.153 4.153 14 C -0.179 4.179 15 C 0.041 3.959 16 N -0.310 5.310 17 C -0.379 4.379 18 H 0.084 0.916 19 C -0.197 4.197 20 N -0.549 5.549 21 Si 0.732 3.268 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.203 1.203 25 C 0.014 3.986 26 S 0.467 5.533 27 H 0.077 0.923 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.107 0.893 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.160 0.840 35 H 0.170 0.830 36 H 0.224 0.776 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.037 0.963 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -12.002 3.045 -21.752 25.030 hybrid contribution 1.224 -1.294 -0.382 1.821 sum -10.779 1.751 -22.134 24.681 Atomic orbital electron populations 1.21944 0.93813 1.02509 1.02391 1.19763 0.95972 0.95727 0.93286 1.21947 1.01785 0.94592 1.02397 1.24259 1.05126 1.01667 1.00086 1.19966 1.01932 0.97466 0.98878 1.20753 0.98245 0.99841 0.90219 1.24759 1.11261 1.04025 0.97848 1.16952 0.79807 0.82863 0.83372 1.90862 1.39172 1.28950 1.81201 1.46042 1.53077 1.30339 1.07311 1.21806 0.97732 1.01673 0.76642 0.89336 1.21687 0.96360 1.00330 0.96971 1.22179 1.00537 1.01529 0.93637 1.20851 0.83346 0.95107 0.96580 1.44003 1.17152 1.70660 0.99186 1.19227 1.03386 1.17286 0.97988 0.91552 1.25021 0.98856 0.96457 0.99340 1.70049 1.47303 1.23087 1.14456 0.86274 0.80715 0.80720 0.79097 1.21461 1.21551 1.20328 1.21179 0.94135 0.96521 0.86723 1.82851 1.47800 1.26695 0.95973 0.92272 0.91764 0.92081 0.89343 0.92251 0.92001 0.91762 0.84041 0.82978 0.77561 0.92202 0.93013 0.92370 0.92647 0.89210 0.96279 0.93696 0.92334 0.96453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.08 37.16 0.34 -0.53 16 2 C -0.03 -0.18 3.25 -91.77 -0.30 -0.48 16 3 C -0.15 -0.91 9.08 37.16 0.34 -0.58 16 4 C -0.19 -1.72 4.94 -35.86 -0.18 -1.90 16 5 C -0.15 -1.46 9.95 -41.41 -0.41 -1.88 16 6 C -0.06 -0.70 10.01 -40.43 -0.40 -1.10 16 7 C -0.26 -3.45 6.45 -36.80 -0.24 -3.69 16 8 C 0.58 9.83 7.75 -12.90 -0.10 9.73 16 9 O -0.52 -10.94 16.50 5.18 0.09 -10.85 16 10 N -0.72 -11.16 5.08 -55.02 -0.28 -11.44 16 11 C 0.13 2.35 2.60 -67.81 -0.18 2.17 16 12 H 0.09 1.87 7.58 -51.93 -0.39 1.47 16 13 C -0.12 -1.90 5.36 -26.69 -0.14 -2.04 16 14 C -0.14 -2.61 6.08 -26.61 -0.16 -2.78 16 15 C 0.17 3.98 5.31 -3.71 -0.02 3.96 16 16 N -0.59 -15.18 2.99 -172.32 -0.52 -15.70 16 17 C -0.25 -7.11 9.58 -15.06 -0.14 -7.26 16 18 H 0.07 1.91 7.89 -52.48 -0.41 1.50 16 19 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 20 N -0.90 -26.53 11.19 55.49 0.62 -25.91 16 21 Si 0.90 22.29 29.59 -169.99 -5.03 17.26 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.14 3.19 6.09 -3.71 -0.02 3.16 16 26 S 0.20 1.96 21.37 -107.50 -2.30 -0.34 16 27 H 0.06 0.36 7.90 -51.93 -0.41 -0.05 16 28 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 31 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.15 1.83 8.06 -52.48 -0.42 1.41 16 36 H 0.39 4.93 7.72 -40.82 -0.31 4.62 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 44 H 0.06 1.41 7.93 -51.93 -0.41 1.00 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 375.36 15.07 5.66 5.66 Total: -1.00 -32.38 375.36 -10.76 -43.15 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -7.30 Total: 1.42 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -1.71 Total: -3.25 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.17 Total: -53.04 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.85 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.26 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.30 Total: -0.34 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.38 -10.76 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009668284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.612 kcal (2) G-P(sol) polarization free energy of solvation -32.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds