Wall clock time and date at job start Tue Mar 31 2020 13:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47417 * 2 1 4 4 C 1.50699 * 109.46839 * 119.99775 * 2 1 3 5 5 C 1.33823 * 124.51678 * 119.72609 * 4 2 1 6 6 C 1.37479 * 115.09556 * 180.26628 * 5 4 2 7 7 C 1.36647 * 113.30021 * 359.97438 * 6 5 4 8 8 C 1.46575 * 125.46017 * 179.97438 * 7 6 5 9 9 O 1.21706 * 120.00331 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00028 * 180.02562 * 8 7 6 11 11 C 1.46509 * 119.99801 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.49575 * 325.00139 * 11 10 8 13 13 C 1.53041 * 109.49268 * 204.94021 * 11 10 8 14 14 C 1.53045 * 109.53342 * 178.71686 * 13 11 10 15 15 C 1.53196 * 109.34120 * 61.31603 * 14 13 11 16 16 N 1.46927 * 108.77385 * 305.38083 * 15 14 13 17 17 C 1.36933 * 120.62877 * 233.58728 * 16 15 14 18 18 H 1.08004 * 120.00078 * 152.30790 * 17 16 15 19 19 C 1.38816 * 120.00251 * 332.30438 * 17 16 15 20 20 N 1.31626 * 119.99523 * 342.60223 * 19 17 16 21 21 Si 1.86801 * 120.00063 * 162.60014 * 19 17 16 22 22 H 1.48493 * 109.47049 * 94.35353 * 21 19 17 23 23 H 1.48503 * 109.46953 * 214.34929 * 21 19 17 24 24 H 1.48491 * 109.47019 * 334.35011 * 21 19 17 25 25 C 1.46932 * 118.74098 * 53.60693 * 16 15 14 26 26 S 1.70612 * 124.52495 * 300.02126 * 4 2 1 27 27 H 1.08996 * 109.47189 * 300.00230 * 1 2 3 28 28 H 1.09000 * 109.46712 * 59.99865 * 1 2 3 29 29 H 1.09000 * 109.46965 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47189 * 239.99770 * 2 1 3 31 31 H 1.08996 * 109.47129 * 59.99733 * 3 2 1 32 32 H 1.08998 * 109.47510 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47290 * 299.99781 * 3 2 1 34 34 H 1.07991 * 122.45704 * 0.23813 * 5 4 2 35 35 H 1.08006 * 123.34868 * 179.97438 * 6 5 4 36 36 H 0.96996 * 119.99977 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.45626 * 298.69765 * 13 11 10 38 38 H 1.08990 * 109.46332 * 58.66392 * 13 11 10 39 39 H 1.08994 * 109.47066 * 301.35938 * 14 13 11 40 40 H 1.09000 * 109.51920 * 181.29568 * 14 13 11 41 41 H 1.08991 * 109.58821 * 185.59264 * 15 14 13 42 42 H 1.08996 * 109.58605 * 65.16376 * 15 14 13 43 43 H 0.97001 * 119.99419 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58569 * 186.60624 * 25 16 15 45 45 H 1.08992 * 109.69856 * 66.24899 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.8005 -1.8060 1.2131 6 6 3.1426 -2.2980 2.4505 7 6 2.6282 -1.5668 3.4839 8 6 2.8247 -1.8524 4.9081 9 8 3.4943 -2.8094 5.2502 10 7 2.2637 -1.0552 5.8389 11 6 2.4597 -1.3411 7.2624 12 1 2.4950 -2.4197 7.4154 13 6 1.3000 -0.7489 8.0666 14 6 1.4872 -1.0745 9.5502 15 6 2.7923 -0.4448 10.0471 16 7 3.8936 -0.8976 9.1863 17 6 5.0087 -1.4790 9.7281 18 1 5.5833 -2.1876 9.1499 19 6 5.4008 -1.1578 11.0204 20 7 4.9327 -0.0723 11.5994 21 14 6.5925 -2.2659 11.9377 22 1 7.9771 -1.7608 11.7568 23 1 6.2520 -2.2699 13.3831 24 1 6.4956 -3.6475 11.4024 25 6 3.7758 -0.7144 7.7333 26 16 1.6915 -0.2293 2.8315 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 3.1274 -2.2700 0.2945 35 1 3.7567 -3.1751 2.5916 36 1 1.7297 -0.2928 5.5664 37 1 1.2800 0.3326 7.9324 38 1 0.3601 -1.1756 7.7165 39 1 1.5315 -2.1555 9.6822 40 1 0.6493 -0.6725 10.1198 41 1 2.9801 -0.7558 11.0747 42 1 2.7149 0.6414 10.0002 43 1 5.2063 0.1520 12.5026 44 1 4.6125 -1.2034 7.2343 45 1 3.7797 0.3493 7.4956 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009668284.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:09 Heat of formation + Delta-G solvation = -19.824364 kcal Electronic energy + Delta-G solvation = -24690.942288 eV Core-core repulsion = 21220.033828 eV Total energy + Delta-G solvation = -3470.908461 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.07837 -39.40484 -38.74121 -36.07694 -35.93463 -34.20431 -32.37035 -31.10397 -29.46082 -28.02277 -27.28835 -26.04898 -23.96034 -23.82284 -22.33267 -21.92203 -21.30158 -20.18951 -18.90724 -18.70662 -17.40940 -16.88599 -16.66055 -16.30352 -16.05644 -15.65168 -15.32491 -15.29773 -14.98388 -14.87727 -14.57731 -14.32046 -14.13877 -14.05902 -13.46639 -13.45554 -13.20931 -13.04962 -12.92415 -12.76210 -12.60130 -12.37019 -12.16741 -12.11134 -12.06457 -11.99156 -11.79247 -11.62919 -11.55115 -11.35029 -11.13565 -10.65043 -10.27011 -9.66556 -9.52305 -8.72215 -7.92821 -5.38082 -0.52548 0.43917 0.90011 1.37745 1.42826 1.43835 1.55476 2.01119 2.15773 2.49119 3.21404 3.57756 3.64663 3.75643 3.91591 3.99128 4.06783 4.21036 4.21902 4.31664 4.44285 4.44845 4.52098 4.63704 4.77001 4.78009 4.84218 4.88331 4.97166 4.97887 5.03486 5.09067 5.10896 5.12935 5.23079 5.23431 5.34205 5.36782 5.39330 5.42246 5.51773 5.61028 5.74425 6.34456 6.42666 7.08789 7.12049 7.79527 8.29814 9.13102 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.024112 B = 0.002684 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.985917 B =10430.579686 C =10890.294824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.028 4.028 3 C -0.151 4.151 4 C -0.177 4.177 5 C -0.162 4.162 6 C -0.056 4.056 7 C -0.303 4.303 8 C 0.583 3.417 9 O -0.578 6.578 10 N -0.705 5.705 11 C 0.142 3.858 12 H 0.061 0.939 13 C -0.105 4.105 14 C -0.129 4.129 15 C 0.170 3.830 16 N -0.607 5.607 17 C -0.269 4.269 18 H 0.052 0.948 19 C -0.043 4.043 20 N -0.928 5.928 21 Si 0.966 3.034 22 H -0.284 1.284 23 H -0.283 1.283 24 H -0.276 1.276 25 C 0.145 3.855 26 S 0.242 5.758 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.058 0.942 30 H 0.104 0.896 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.081 0.919 34 H 0.166 0.834 35 H 0.143 0.857 36 H 0.409 0.591 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.048 0.952 40 H 0.088 0.912 41 H 0.056 0.944 42 H 0.007 0.993 43 H 0.253 0.747 44 H 0.028 0.972 45 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.739 3.438 -25.110 28.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.048 4.048 3 C -0.208 4.208 4 C -0.297 4.297 5 C -0.191 4.191 6 C -0.090 4.090 7 C -0.423 4.423 8 C 0.371 3.629 9 O -0.459 6.459 10 N -0.356 5.356 11 C 0.035 3.965 12 H 0.079 0.921 13 C -0.143 4.143 14 C -0.168 4.168 15 C 0.045 3.955 16 N -0.330 5.330 17 C -0.399 4.399 18 H 0.069 0.931 19 C -0.239 4.239 20 N -0.574 5.574 21 Si 0.793 3.207 22 H -0.211 1.211 23 H -0.209 1.209 24 H -0.201 1.201 25 C 0.018 3.982 26 S 0.511 5.489 27 H 0.075 0.925 28 H 0.099 0.901 29 H 0.077 0.923 30 H 0.122 0.878 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.184 0.816 35 H 0.160 0.840 36 H 0.245 0.755 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.106 0.894 41 H 0.075 0.925 42 H 0.025 0.975 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -14.076 4.031 -24.027 28.136 hybrid contribution 1.859 -1.517 0.169 2.406 sum -12.217 2.514 -23.857 26.921 Atomic orbital electron populations 1.21964 0.92940 1.02619 1.03166 1.19928 0.96604 0.95881 0.92424 1.21972 1.01463 0.94240 1.03158 1.24750 1.03346 1.00886 1.00730 1.20114 1.02390 0.97939 0.98677 1.20923 0.97506 0.99367 0.91183 1.24482 1.14691 1.07134 0.96003 1.17448 0.78578 0.81951 0.84906 1.90825 1.41511 1.31215 1.82391 1.45792 1.53068 1.30861 1.05899 1.21343 0.96713 0.99741 0.78662 0.92120 1.21634 0.96588 1.01470 0.94636 1.22015 0.98543 1.00554 0.95695 1.20750 0.85253 0.94544 0.94923 1.44228 1.17250 1.70900 1.00659 1.19385 1.04461 1.17476 0.98628 0.93052 1.25727 1.00714 0.97671 0.99819 1.70172 1.48416 1.24234 1.14556 0.85296 0.78636 0.78879 0.77852 1.21076 1.20858 1.20133 1.21189 0.95454 0.96539 0.84991 1.82618 1.46070 1.24276 0.95976 0.92546 0.90055 0.92316 0.87771 0.92612 0.92570 0.89995 0.81629 0.83969 0.75465 0.90451 0.89342 0.93330 0.89389 0.92520 0.97531 0.93771 0.95349 0.96089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.08 71.98 0.65 -0.57 16 2 C -0.03 -0.27 3.25 -11.54 -0.04 -0.31 16 3 C -0.15 -1.36 9.08 71.98 0.65 -0.70 16 4 C -0.18 -2.71 4.94 24.68 0.12 -2.59 16 5 C -0.16 -2.81 9.95 21.09 0.21 -2.60 16 6 C -0.06 -1.34 10.01 21.72 0.22 -1.12 16 7 C -0.30 -8.04 6.45 24.07 0.16 -7.88 16 8 C 0.58 20.12 7.75 86.42 0.67 20.79 16 9 O -0.58 -25.55 16.50 -4.37 -0.07 -25.62 16 10 N -0.71 -21.72 5.08 -446.21 -2.27 -23.99 16 11 C 0.14 5.29 2.60 45.07 0.12 5.41 16 12 H 0.06 2.64 7.58 -2.39 -0.02 2.63 16 13 C -0.11 -3.23 5.36 30.62 0.16 -3.07 16 14 C -0.13 -4.68 6.08 30.67 0.19 -4.49 16 15 C 0.17 8.27 5.31 86.36 0.46 8.73 16 16 N -0.61 -32.50 2.99 -699.10 -2.09 -34.60 16 17 C -0.27 -16.02 9.58 84.04 0.81 -15.21 16 18 H 0.05 3.13 7.89 -2.91 -0.02 3.11 16 19 C -0.04 -2.53 4.91 84.86 0.42 -2.11 16 20 N -0.93 -55.79 11.19 21.65 0.24 -55.55 16 21 Si 0.97 46.96 29.59 68.60 2.03 48.99 16 22 H -0.28 -13.58 7.11 99.48 0.71 -12.88 16 23 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 24 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 25 C 0.15 6.75 6.09 86.36 0.53 7.28 16 26 S 0.24 4.27 21.37 -56.49 -1.21 3.06 16 27 H 0.06 0.50 7.90 -2.39 -0.02 0.48 16 28 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.77 8.07 -2.39 -0.02 0.75 16 31 H 0.05 0.55 7.90 -2.39 -0.02 0.53 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.17 2.02 8.06 -2.92 -0.02 2.00 16 35 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 36 H 0.41 9.61 7.72 -92.71 -0.72 8.89 16 37 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.09 2.65 8.14 -2.39 -0.02 2.64 16 41 H 0.06 3.11 6.04 -2.39 -0.01 3.10 16 42 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 44 H 0.03 1.45 7.93 -2.39 -0.02 1.43 16 45 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -74.21 375.36 2.21 -72.00 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 0.26 Total: 14.16 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 5.32 Total: 1.55 kcal Atomic # 7 Polarization: -110.01 SS G_CDS: -4.12 Total: -114.13 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.07 Total: -25.62 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.21 Total: 3.06 kcal Total: -74.21 2.21 -72.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009668284.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.171 kcal (2) G-P(sol) polarization free energy of solvation -74.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds