Wall clock time and date at job start Tue Mar 31 2020 13:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46900 * 2 1 4 4 C 1.50699 * 109.47416 * 119.99951 * 2 1 3 5 5 C 1.33818 * 124.52247 * 120.00321 * 4 2 1 6 6 C 1.37474 * 115.10384 * 180.02562 * 5 4 2 7 7 C 1.36653 * 113.29497 * 359.97438 * 6 5 4 8 8 C 1.46575 * 125.45919 * 179.97438 * 7 6 5 9 9 O 1.21704 * 120.00017 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00026 * 180.02562 * 8 7 6 11 11 C 1.46507 * 120.00039 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.49694 * 35.05969 * 11 10 8 13 13 C 1.53033 * 109.49839 * 155.16114 * 11 10 8 14 14 C 1.53045 * 109.53702 * 181.31366 * 13 11 10 15 15 C 1.53188 * 109.31606 * 298.63372 * 14 13 11 16 16 N 1.46932 * 108.77384 * 54.63059 * 15 14 13 17 17 C 1.36942 * 120.62572 * 126.41628 * 16 15 14 18 18 H 1.07995 * 120.00093 * 331.81270 * 17 16 15 19 19 C 1.38808 * 119.99580 * 151.81563 * 17 16 15 20 20 N 1.31619 * 120.00377 * 343.07062 * 19 17 16 21 21 Si 1.86805 * 119.99820 * 163.07419 * 19 17 16 22 22 H 1.48495 * 109.47068 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47310 * 119.99965 * 21 19 17 24 24 H 1.48494 * 109.47159 * 239.99876 * 21 19 17 25 25 C 1.46925 * 118.74131 * 306.39693 * 16 15 14 26 26 S 1.70611 * 124.52243 * 299.70610 * 4 2 1 27 27 H 1.08996 * 109.47217 * 60.00410 * 1 2 3 28 28 H 1.09010 * 109.46718 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47478 * 299.99606 * 1 2 3 30 30 H 1.09000 * 109.47478 * 240.00394 * 2 1 3 31 31 H 1.09000 * 109.46733 * 59.99938 * 3 2 1 32 32 H 1.08997 * 109.47121 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47263 * 300.00148 * 3 2 1 34 34 H 1.08003 * 122.44598 * 0.02562 * 5 4 2 35 35 H 1.07990 * 123.35399 * 179.97438 * 6 5 4 36 36 H 0.97001 * 120.00500 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.46106 * 301.33462 * 13 11 10 38 38 H 1.08999 * 109.46187 * 61.29558 * 13 11 10 39 39 H 1.09002 * 109.49787 * 178.68299 * 14 13 11 40 40 H 1.08999 * 109.49774 * 58.58584 * 14 13 11 41 41 H 1.09000 * 109.58427 * 294.85132 * 15 14 13 42 42 H 1.08995 * 109.70814 * 174.48870 * 15 14 13 43 43 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58518 * 293.81724 * 25 16 15 45 45 H 1.09000 * 109.58486 * 173.39705 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8050 -1.8029 1.2131 6 6 3.1506 -2.2925 2.4503 7 6 2.6345 -1.5626 3.4838 8 6 2.8339 -1.8462 4.9080 9 8 3.5078 -2.8002 5.2499 10 7 2.2709 -1.0506 5.8388 11 6 2.4706 -1.3338 7.2623 12 1 3.4740 -1.7305 7.4170 13 6 2.3005 -0.0442 8.0685 14 6 2.5412 -0.3326 9.5521 15 6 1.5077 -1.3505 10.0446 16 7 1.5656 -2.5384 9.1818 17 6 1.7364 -3.7852 9.7218 18 1 2.2651 -3.9011 10.6564 19 6 1.2301 -4.9000 9.0679 20 7 0.3176 -4.7552 8.1305 21 14 1.8437 -6.6059 9.5184 22 1 2.8619 -6.4976 10.5939 23 1 0.7053 -7.4315 9.9952 24 1 2.4522 -7.2445 8.3239 25 6 1.4363 -2.3632 7.7288 26 16 1.6980 -0.2249 2.8315 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6765 1.9563 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 3.1330 -2.2660 0.2942 35 1 3.7684 -3.1669 2.5914 36 1 1.7340 -0.2901 5.5664 37 1 3.0191 0.6983 7.7216 38 1 1.2889 0.3383 7.9324 39 1 2.4428 0.5909 10.1228 40 1 3.5439 -0.7384 9.6858 41 1 0.5110 -0.9119 9.9961 42 1 1.7324 -1.6343 11.0727 43 1 -0.0359 -5.5342 7.6733 44 1 0.4337 -2.0072 7.4915 45 1 1.6163 -3.3147 7.2286 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009668287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:14 Heat of formation + Delta-G solvation = 0.007887 kcal Electronic energy + Delta-G solvation = -25018.306141 eV Core-core repulsion = 21548.257671 eV Total energy + Delta-G solvation = -3470.048470 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.54442 -38.30172 -37.18839 -35.23486 -34.10435 -32.66018 -30.13565 -29.69040 -28.26095 -27.50906 -25.24878 -24.97932 -22.43714 -22.07106 -21.47886 -20.58069 -19.67761 -18.92765 -17.68570 -16.74676 -16.18524 -15.40021 -15.14476 -14.78592 -14.66374 -14.42565 -14.02351 -13.88529 -13.82336 -13.48132 -13.21662 -13.01100 -12.74514 -12.42409 -12.34659 -12.28504 -12.21514 -11.85456 -11.60859 -11.48251 -11.42863 -10.99805 -10.80591 -10.75117 -10.70030 -10.47419 -10.20805 -9.99617 -9.91863 -9.55187 -9.48033 -8.75377 -8.61472 -8.49045 -8.40621 -6.62657 -5.72562 -3.16414 0.53622 1.42027 1.85681 2.42941 3.42722 3.48180 3.52730 3.54194 3.58508 4.29653 4.56254 4.56849 4.77882 5.02875 5.07913 5.26193 5.30935 5.36862 5.40285 5.42241 5.46830 5.52281 5.56072 5.64427 5.66308 5.70089 5.84082 5.88668 5.98955 6.08415 6.15275 6.16060 6.33781 6.35489 6.43593 6.50259 6.71013 6.78253 6.91661 6.98004 7.31540 7.75314 7.84427 7.90234 8.50504 8.58609 9.25774 9.89791 10.44687 11.35395 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.003335 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.758164 B = 8392.819904 C = 9321.177290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.026 4.026 3 C -0.148 4.148 4 C -0.195 4.195 5 C -0.150 4.150 6 C -0.061 4.061 7 C -0.253 4.253 8 C 0.584 3.416 9 O -0.520 6.520 10 N -0.715 5.715 11 C 0.117 3.883 12 H 0.084 0.916 13 C -0.116 4.116 14 C -0.130 4.130 15 C 0.142 3.858 16 N -0.588 5.588 17 C -0.256 4.256 18 H 0.067 0.933 19 C 0.006 3.994 20 N -0.898 5.898 21 Si 0.902 3.098 22 H -0.277 1.277 23 H -0.291 1.291 24 H -0.288 1.288 25 C 0.167 3.833 26 S 0.196 5.804 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.141 0.859 35 H 0.152 0.848 36 H 0.389 0.611 37 H 0.051 0.949 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.018 0.982 42 H 0.056 0.944 43 H 0.253 0.747 44 H 0.018 0.982 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.855 14.661 -16.090 21.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.047 4.047 3 C -0.206 4.206 4 C -0.314 4.314 5 C -0.181 4.181 6 C -0.093 4.093 7 C -0.373 4.373 8 C 0.369 3.631 9 O -0.397 6.397 10 N -0.366 5.366 11 C 0.012 3.988 12 H 0.102 0.898 13 C -0.155 4.155 14 C -0.170 4.170 15 C 0.015 3.985 16 N -0.311 5.311 17 C -0.386 4.386 18 H 0.084 0.916 19 C -0.193 4.193 20 N -0.542 5.542 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.218 1.218 24 H -0.214 1.214 25 C 0.040 3.960 26 S 0.464 5.536 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.222 0.778 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.036 0.964 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.425 15.012 -15.224 21.428 hybrid contribution 0.781 -1.784 -0.783 2.099 sum 2.206 13.228 -16.007 20.883 Atomic orbital electron populations 1.21947 0.93797 1.02652 1.02319 1.19746 0.96011 0.95591 0.93313 1.21940 1.01631 0.94729 1.02312 1.24225 1.05224 1.01959 1.00040 1.19949 1.01810 0.97507 0.98822 1.20747 0.98597 0.99762 0.90230 1.24803 1.10600 1.03941 0.97978 1.16916 0.80040 0.82861 0.83295 1.90872 1.39610 1.28167 1.81090 1.45970 1.52749 1.30523 1.07313 1.22033 1.03058 0.96901 0.76765 0.89768 1.21684 1.00970 0.96391 0.96424 1.21998 1.01331 0.99284 0.94400 1.20962 0.94844 0.88060 0.94589 1.43974 1.84675 1.02039 1.00426 1.19182 1.29241 0.82848 1.07295 0.91550 1.25050 0.96444 0.98358 0.99433 1.70023 1.27739 1.28904 1.27560 0.86237 0.78200 0.84549 0.77863 1.20192 1.21767 1.21419 1.21093 0.92639 0.97686 0.84593 1.82792 1.48283 1.26550 0.95959 0.91844 0.91982 0.92240 0.89409 0.92300 0.92115 0.91835 0.84123 0.83012 0.77822 0.93027 0.92214 0.92568 0.92068 0.96407 0.92572 0.93707 0.96443 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.09 37.16 0.34 -0.74 16 2 C -0.03 -0.20 3.25 -91.77 -0.30 -0.50 16 3 C -0.15 -0.99 9.08 37.16 0.34 -0.65 16 4 C -0.19 -2.01 4.95 -35.86 -0.18 -2.19 16 5 C -0.15 -1.67 9.95 -41.41 -0.41 -2.09 16 6 C -0.06 -0.85 10.01 -40.43 -0.40 -1.25 16 7 C -0.25 -3.87 6.45 -36.79 -0.24 -4.11 16 8 C 0.58 11.16 7.75 -12.90 -0.10 11.06 16 9 O -0.52 -12.24 16.50 5.18 0.09 -12.15 16 10 N -0.72 -12.56 5.08 -55.03 -0.28 -12.84 16 11 C 0.12 2.37 2.60 -67.81 -0.18 2.19 16 12 H 0.08 1.91 7.58 -51.93 -0.39 1.52 16 13 C -0.12 -1.92 5.35 -26.69 -0.14 -2.06 16 14 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 15 C 0.14 2.97 6.52 -3.71 -0.02 2.95 16 16 N -0.59 -15.19 2.99 -172.32 -0.52 -15.71 16 17 C -0.26 -7.29 9.58 -15.06 -0.14 -7.44 16 18 H 0.07 1.85 7.88 -52.49 -0.41 1.43 16 19 C 0.01 0.18 4.92 -17.43 -0.09 0.10 16 20 N -0.90 -27.24 11.20 55.49 0.62 -26.62 16 21 Si 0.90 22.83 29.59 -169.99 -5.03 17.81 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.02 16 25 C 0.17 4.17 4.88 -3.71 -0.02 4.15 16 26 S 0.20 2.22 21.37 -107.50 -2.30 -0.07 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 29 H 0.06 0.45 7.91 -51.93 -0.41 0.04 16 30 H 0.09 0.59 8.07 -51.93 -0.42 0.17 16 31 H 0.06 0.40 7.89 -51.93 -0.41 0.00 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.14 1.24 8.06 -52.48 -0.42 0.82 16 35 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 36 H 0.39 5.58 7.72 -40.82 -0.31 5.26 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 43 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 2.80 6.06 -51.93 -0.31 2.48 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -33.45 375.38 -10.76 -44.21 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -7.30 Total: 2.68 kcal Atomic # 6 Polarization: -1.27 SS G_CDS: -1.71 Total: -2.98 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.17 Total: -55.16 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: 0.09 Total: -12.15 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.03 Total: 17.81 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.30 Total: -0.07 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.45 -10.76 -44.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009668287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.221 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds