Wall clock time and date at job start Tue Mar 31 2020 13:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46900 * 2 1 4 4 C 1.50699 * 109.47416 * 119.99951 * 2 1 3 5 5 C 1.33818 * 124.52247 * 120.00321 * 4 2 1 6 6 C 1.37474 * 115.10384 * 180.02562 * 5 4 2 7 7 C 1.36653 * 113.29497 * 359.97438 * 6 5 4 8 8 C 1.46575 * 125.45919 * 179.97438 * 7 6 5 9 9 O 1.21704 * 120.00017 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00026 * 180.02562 * 8 7 6 11 11 C 1.46507 * 120.00039 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.49694 * 35.05969 * 11 10 8 13 13 C 1.53033 * 109.49839 * 155.16114 * 11 10 8 14 14 C 1.53045 * 109.53702 * 181.31366 * 13 11 10 15 15 C 1.53188 * 109.31606 * 298.63372 * 14 13 11 16 16 N 1.46932 * 108.77384 * 54.63059 * 15 14 13 17 17 C 1.36942 * 120.62572 * 126.41628 * 16 15 14 18 18 H 1.07995 * 120.00093 * 331.81270 * 17 16 15 19 19 C 1.38808 * 119.99580 * 151.81563 * 17 16 15 20 20 N 1.31619 * 120.00377 * 343.07062 * 19 17 16 21 21 Si 1.86805 * 119.99820 * 163.07419 * 19 17 16 22 22 H 1.48495 * 109.47068 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47310 * 119.99965 * 21 19 17 24 24 H 1.48494 * 109.47159 * 239.99876 * 21 19 17 25 25 C 1.46925 * 118.74131 * 306.39693 * 16 15 14 26 26 S 1.70611 * 124.52243 * 299.70610 * 4 2 1 27 27 H 1.08996 * 109.47217 * 60.00410 * 1 2 3 28 28 H 1.09010 * 109.46718 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47478 * 299.99606 * 1 2 3 30 30 H 1.09000 * 109.47478 * 240.00394 * 2 1 3 31 31 H 1.09000 * 109.46733 * 59.99938 * 3 2 1 32 32 H 1.08997 * 109.47121 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47263 * 300.00148 * 3 2 1 34 34 H 1.08003 * 122.44598 * 0.02562 * 5 4 2 35 35 H 1.07990 * 123.35399 * 179.97438 * 6 5 4 36 36 H 0.97001 * 120.00500 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.46106 * 301.33462 * 13 11 10 38 38 H 1.08999 * 109.46187 * 61.29558 * 13 11 10 39 39 H 1.09002 * 109.49787 * 178.68299 * 14 13 11 40 40 H 1.08999 * 109.49774 * 58.58584 * 14 13 11 41 41 H 1.09000 * 109.58427 * 294.85132 * 15 14 13 42 42 H 1.08995 * 109.70814 * 174.48870 * 15 14 13 43 43 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 44 44 H 1.09003 * 109.58518 * 293.81724 * 25 16 15 45 45 H 1.09000 * 109.58486 * 173.39705 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.8050 -1.8029 1.2131 6 6 3.1506 -2.2925 2.4503 7 6 2.6345 -1.5626 3.4838 8 6 2.8339 -1.8462 4.9080 9 8 3.5078 -2.8002 5.2499 10 7 2.2709 -1.0506 5.8388 11 6 2.4706 -1.3338 7.2623 12 1 3.4740 -1.7305 7.4170 13 6 2.3005 -0.0442 8.0685 14 6 2.5412 -0.3326 9.5521 15 6 1.5077 -1.3505 10.0446 16 7 1.5656 -2.5384 9.1818 17 6 1.7364 -3.7852 9.7218 18 1 2.2651 -3.9011 10.6564 19 6 1.2301 -4.9000 9.0679 20 7 0.3176 -4.7552 8.1305 21 14 1.8437 -6.6059 9.5184 22 1 2.8619 -6.4976 10.5939 23 1 0.7053 -7.4315 9.9952 24 1 2.4522 -7.2445 8.3239 25 6 1.4363 -2.3632 7.7288 26 16 1.6980 -0.2249 2.8315 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.6765 1.9563 0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 3.1330 -2.2660 0.2942 35 1 3.7684 -3.1669 2.5914 36 1 1.7340 -0.2901 5.5664 37 1 3.0191 0.6983 7.7216 38 1 1.2889 0.3383 7.9324 39 1 2.4428 0.5909 10.1228 40 1 3.5439 -0.7384 9.6858 41 1 0.5110 -0.9119 9.9961 42 1 1.7324 -1.6343 11.0727 43 1 -0.0359 -5.5342 7.6733 44 1 0.4337 -2.0072 7.4915 45 1 1.6163 -3.3147 7.2286 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009668287.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:13 Heat of formation + Delta-G solvation = -20.804779 kcal Electronic energy + Delta-G solvation = -25019.208646 eV Core-core repulsion = 21548.257671 eV Total energy + Delta-G solvation = -3470.950975 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.04333 -39.39919 -38.72628 -36.03708 -35.85773 -34.48432 -31.99439 -31.17561 -29.53098 -28.02443 -27.27385 -26.06408 -24.02593 -23.74148 -22.31071 -21.90366 -21.25525 -20.19573 -18.92720 -18.71258 -17.45369 -16.90544 -16.69222 -16.13332 -16.04435 -15.65193 -15.33232 -15.30722 -14.95244 -14.85785 -14.57036 -14.28818 -14.11595 -14.05595 -13.53165 -13.46232 -13.21571 -12.97879 -12.92886 -12.69082 -12.54009 -12.39009 -12.28004 -12.12042 -12.06929 -12.06290 -11.72679 -11.65032 -11.56514 -11.30224 -11.10856 -10.59558 -10.26125 -9.66946 -9.53230 -8.71649 -7.91524 -5.37895 -0.53216 0.42618 0.88767 1.37152 1.38957 1.43474 1.51999 2.03754 2.19688 2.47337 3.25010 3.57035 3.66560 3.81578 3.95884 3.99100 4.10530 4.21555 4.23150 4.30275 4.43562 4.45282 4.57271 4.63054 4.77882 4.79353 4.83026 4.88838 4.96825 5.04645 5.07231 5.10011 5.16693 5.18421 5.22487 5.29141 5.33237 5.36632 5.36807 5.41318 5.50713 5.59832 5.72622 6.33393 6.46634 7.08101 7.15315 7.82267 8.31686 9.13434 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.016518 B = 0.003335 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.758164 B = 8392.819904 C = 9321.177290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.027 4.027 3 C -0.148 4.148 4 C -0.177 4.177 5 C -0.161 4.161 6 C -0.059 4.059 7 C -0.304 4.304 8 C 0.580 3.420 9 O -0.580 6.580 10 N -0.705 5.705 11 C 0.130 3.870 12 H 0.054 0.946 13 C -0.108 4.108 14 C -0.120 4.120 15 C 0.134 3.866 16 N -0.610 5.610 17 C -0.263 4.263 18 H 0.070 0.930 19 C -0.052 4.052 20 N -0.931 5.931 21 Si 0.962 3.038 22 H -0.262 1.262 23 H -0.284 1.284 24 H -0.299 1.299 25 C 0.180 3.820 26 S 0.245 5.755 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.105 0.895 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.167 0.833 35 H 0.139 0.861 36 H 0.407 0.593 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.100 0.900 40 H 0.052 0.948 41 H 0.023 0.977 42 H 0.057 0.943 43 H 0.247 0.753 44 H 0.000 1.000 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.769 17.634 -17.441 24.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.048 4.048 3 C -0.206 4.206 4 C -0.297 4.297 5 C -0.190 4.190 6 C -0.093 4.093 7 C -0.424 4.424 8 C 0.367 3.633 9 O -0.462 6.462 10 N -0.355 5.355 11 C 0.024 3.976 12 H 0.072 0.928 13 C -0.146 4.146 14 C -0.160 4.160 15 C 0.010 3.990 16 N -0.334 5.334 17 C -0.394 4.394 18 H 0.087 0.913 19 C -0.248 4.248 20 N -0.577 5.577 21 Si 0.790 3.210 22 H -0.186 1.186 23 H -0.211 1.211 24 H -0.227 1.227 25 C 0.053 3.947 26 S 0.513 5.487 27 H 0.102 0.898 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.123 0.877 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.185 0.815 35 H 0.157 0.843 36 H 0.243 0.757 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.071 0.929 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.056 0.944 44 H 0.018 0.982 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 1.325 18.059 -16.554 24.534 hybrid contribution 0.756 -2.627 -0.454 2.771 sum 2.081 15.432 -17.008 23.060 Atomic orbital electron populations 1.21978 0.93229 1.02445 1.03209 1.19936 0.96370 0.96179 0.92281 1.21960 1.01578 0.93861 1.03211 1.24771 1.03147 1.01068 1.00741 1.20092 1.02395 0.98052 0.98497 1.20921 0.97848 0.99184 0.91377 1.24526 1.14346 1.07458 0.96031 1.17495 0.78871 0.81833 0.85056 1.90823 1.42299 1.30625 1.82448 1.45776 1.52698 1.30835 1.06220 1.21607 0.99431 0.97841 0.78684 0.92794 1.21669 1.03048 0.94598 0.95267 1.21900 0.99185 0.99739 0.95143 1.21205 0.96466 0.87287 0.94084 1.44259 1.85000 1.02839 1.01255 1.19539 1.28247 0.84394 1.07181 0.91251 1.25827 0.97058 1.01909 0.99973 1.70178 1.29294 1.29247 1.28969 0.85279 0.77985 0.80343 0.77358 1.18578 1.21099 1.22672 1.20758 0.93068 0.96518 0.84373 1.82515 1.46377 1.23812 0.95981 0.89795 0.92758 0.92631 0.87692 0.92551 0.92263 0.89902 0.81517 0.84328 0.75691 0.89470 0.90579 0.88119 0.92943 0.95924 0.92433 0.94444 0.98193 0.94014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.09 71.98 0.65 -1.05 16 2 C -0.03 -0.33 3.25 -11.54 -0.04 -0.36 16 3 C -0.15 -1.45 9.08 71.98 0.65 -0.79 16 4 C -0.18 -3.25 4.95 24.68 0.12 -3.13 16 5 C -0.16 -3.35 9.95 21.08 0.21 -3.14 16 6 C -0.06 -1.69 10.01 21.72 0.22 -1.47 16 7 C -0.30 -9.53 6.45 24.07 0.16 -9.37 16 8 C 0.58 23.36 7.75 86.42 0.67 24.03 16 9 O -0.58 -29.53 16.50 -4.36 -0.07 -29.60 16 10 N -0.70 -25.24 5.08 -446.23 -2.27 -27.51 16 11 C 0.13 5.36 2.60 45.07 0.12 5.48 16 12 H 0.05 2.56 7.58 -2.39 -0.02 2.54 16 13 C -0.11 -3.29 5.35 30.62 0.16 -3.13 16 14 C -0.12 -3.80 6.08 30.67 0.19 -3.62 16 15 C 0.13 5.53 6.52 86.36 0.56 6.09 16 16 N -0.61 -32.31 2.99 -699.09 -2.09 -34.40 16 17 C -0.26 -15.44 9.58 84.03 0.81 -14.63 16 18 H 0.07 3.93 7.88 -2.91 -0.02 3.90 16 19 C -0.05 -3.15 4.92 84.86 0.42 -2.73 16 20 N -0.93 -59.34 11.20 21.65 0.24 -59.09 16 21 Si 0.96 48.69 29.59 68.60 2.03 50.72 16 22 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -13.97 7.11 99.48 0.71 -13.27 16 24 H -0.30 -15.58 7.11 99.48 0.71 -14.88 16 25 C 0.18 9.41 4.88 86.36 0.42 9.83 16 26 S 0.24 5.17 21.37 -56.49 -1.21 3.96 16 27 H 0.08 0.63 8.14 -2.39 -0.02 0.62 16 28 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.05 0.67 7.91 -2.39 -0.02 0.65 16 30 H 0.10 0.98 8.07 -2.39 -0.02 0.96 16 31 H 0.06 0.58 7.89 -2.39 -0.02 0.57 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.14 4.20 8.06 -2.92 -0.02 4.18 16 36 H 0.41 11.37 7.72 -92.71 -0.72 10.65 16 37 H 0.09 2.13 8.14 -2.39 -0.02 2.12 16 38 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 2.31 7.93 -2.39 -0.02 2.29 16 43 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 44 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 45 H 0.04 2.62 6.06 -2.39 -0.01 2.61 16 Total: -1.00 -78.98 375.38 2.22 -76.77 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.26 Total: 17.15 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 5.32 Total: 2.00 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -4.12 Total: -121.00 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.07 Total: -29.60 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.03 Total: 50.72 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -1.21 Total: 3.96 kcal Total: -78.98 2.22 -76.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009668287.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.961 kcal (2) G-P(sol) polarization free energy of solvation -78.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds