Wall clock time and date at job start Tue Mar 31 2020 13:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46855 * 2 1 4 4 C 1.52996 * 109.47788 * 119.99806 * 2 1 3 5 5 C 1.50706 * 109.46639 * 64.99901 * 4 2 1 6 6 C 1.33815 * 124.52365 * 90.00436 * 5 4 2 7 7 C 1.37467 * 115.10585 * 180.02562 * 6 5 4 8 8 C 1.36652 * 113.29473 * 0.02562 * 7 6 5 9 9 C 1.46583 * 125.46000 * 180.02562 * 8 7 6 10 10 O 1.21707 * 119.99695 * 359.97438 * 9 8 7 11 11 N 1.34768 * 120.00343 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00312 * 179.97438 * 11 9 8 13 13 H 1.08995 * 110.88448 * 328.88047 * 12 11 9 14 14 C 1.55164 * 111.00382 * 204.99882 * 12 11 9 15 15 C 1.54331 * 102.93823 * 206.42232 * 14 12 11 16 16 N 1.47021 * 107.27039 * 22.19682 * 15 14 12 17 17 C 1.36935 * 125.64388 * 181.02363 * 16 15 14 18 18 H 1.07998 * 120.00302 * 168.93270 * 17 16 15 19 19 C 1.38813 * 120.00049 * 348.92671 * 17 16 15 20 20 N 1.31619 * 119.99946 * 165.68511 * 19 17 16 21 21 Si 1.86794 * 120.00039 * 345.68884 * 19 17 16 22 22 H 1.48507 * 109.46887 * 185.27820 * 21 19 17 23 23 H 1.48502 * 109.47200 * 305.27349 * 21 19 17 24 24 H 1.48502 * 109.47527 * 65.27854 * 21 19 17 25 25 C 1.47419 * 108.70755 * 1.28297 * 16 15 14 26 26 S 1.70618 * 124.52163 * 270.35310 * 5 4 2 27 27 H 1.09006 * 109.46848 * 299.99888 * 1 2 3 28 28 H 1.08994 * 109.47407 * 59.99705 * 1 2 3 29 29 H 1.08998 * 109.46945 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47031 * 240.00189 * 2 1 3 31 31 H 1.09007 * 109.46929 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47229 * 299.99940 * 3 2 1 33 33 H 1.08997 * 109.47147 * 60.00260 * 3 2 1 34 34 H 1.09001 * 109.46958 * 305.00728 * 4 2 1 35 35 H 1.08996 * 109.47664 * 184.99566 * 4 2 1 36 36 H 1.08008 * 122.44707 * 0.05712 * 6 5 4 37 37 H 1.07998 * 123.35802 * 180.02562 * 7 6 5 38 38 H 0.97006 * 120.00266 * 359.97438 * 11 9 8 39 39 H 1.09002 * 110.71803 * 88.06551 * 14 12 11 40 40 H 1.08994 * 110.72079 * 324.78603 * 14 12 11 41 41 H 1.08996 * 109.88013 * 262.77676 * 15 14 12 42 42 H 1.09001 * 110.00368 * 141.68302 * 15 14 12 43 43 H 0.97003 * 119.99939 * 354.92820 * 20 19 17 44 44 H 1.08999 * 110.36652 * 94.48059 * 25 16 15 45 45 H 1.08996 * 110.36976 * 216.80949 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0402 -0.7212 1.2492 5 6 1.6415 -2.1733 1.1888 6 6 2.3829 -3.1410 0.6370 7 6 1.8317 -4.3992 0.6886 8 6 0.6109 -4.4297 1.3020 9 6 -0.2105 -5.6272 1.5022 10 8 0.1836 -6.7085 1.1065 11 7 -1.4021 -5.5307 2.1244 12 6 -2.2233 -6.7273 2.3239 13 1 -2.0683 -7.4439 1.5174 14 6 -3.7239 -6.3561 2.4574 15 6 -4.2930 -7.5158 3.3018 16 7 -3.1678 -8.1166 4.0327 17 6 -3.2483 -9.1895 4.8799 18 1 -2.3467 -9.6696 5.2305 19 6 -4.4888 -9.6600 5.2880 20 7 -4.5888 -10.8404 5.8616 21 14 -6.0163 -8.6180 5.0231 22 1 -7.1843 -9.2820 5.6557 23 1 -5.8155 -7.2803 5.6360 24 1 -6.2637 -8.4632 3.5670 25 6 -1.9396 -7.3690 3.7076 26 16 0.1807 -2.8014 1.8074 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6055 -0.2617 2.1369 35 1 3.1264 -0.6443 1.2950 36 1 3.3444 -2.9477 0.1846 37 1 2.3151 -5.2764 0.2846 38 1 -1.7161 -4.6688 2.4401 39 1 -4.2013 -6.3217 1.4781 40 1 -3.8413 -5.4060 2.9784 41 1 -4.7507 -8.2594 2.6494 42 1 -5.0325 -7.1359 4.0067 43 1 -3.8088 -11.4126 5.9329 44 1 -1.7558 -6.5976 4.4555 45 1 -1.0885 -8.0469 3.6435 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014753435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:18 Heat of formation + Delta-G solvation = 13.548056 kcal Electronic energy + Delta-G solvation = -24331.961829 eV Core-core repulsion = 20862.500505 eV Total energy + Delta-G solvation = -3469.461324 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.87748 -38.60899 -37.57993 -36.26936 -34.24011 -32.22809 -31.03839 -29.51341 -28.31370 -27.63049 -26.86575 -24.25094 -23.64853 -21.82852 -21.02938 -20.77843 -20.18765 -19.25489 -18.16007 -17.44779 -16.40909 -16.22331 -15.60077 -15.35986 -15.05837 -14.89651 -14.60597 -14.21697 -13.98389 -13.63086 -13.44039 -12.99775 -12.82682 -12.76398 -12.68402 -12.50028 -12.43650 -12.18998 -12.11779 -11.56005 -11.45924 -11.33773 -11.20617 -11.10655 -11.09435 -11.05903 -10.67289 -10.13391 -9.96170 -9.31862 -9.10038 -8.97629 -8.85297 -8.79753 -8.65199 -7.03301 -6.29261 -3.21175 0.28059 1.19080 1.61787 2.17723 3.10185 3.18740 3.41492 3.49102 3.72228 4.19860 4.38094 4.43018 4.63237 4.68784 4.79214 4.90404 4.93300 5.07985 5.12542 5.14893 5.19945 5.28985 5.31446 5.37183 5.38353 5.42961 5.47995 5.52306 5.67437 5.72351 5.81640 5.83010 5.86179 5.88651 5.94522 6.07525 6.12552 6.31989 6.36938 6.54976 6.71766 6.75545 7.48011 7.67781 8.17413 8.35464 9.06086 9.56280 10.22774 11.21444 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026890 B = 0.002522 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.047289 B =11101.429523 C =11702.816728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.048 4.048 5 C -0.190 4.190 6 C -0.152 4.152 7 C -0.054 4.054 8 C -0.264 4.264 9 C 0.588 3.412 10 O -0.526 6.526 11 N -0.713 5.713 12 C 0.128 3.872 13 H 0.104 0.896 14 C -0.135 4.135 15 C 0.112 3.888 16 N -0.611 5.611 17 C -0.320 4.320 18 H 0.079 0.921 19 C -0.023 4.023 20 N -0.928 5.928 21 Si 1.073 2.927 22 H -0.301 1.301 23 H -0.298 1.298 24 H -0.286 1.286 25 C 0.129 3.871 26 S 0.200 5.800 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.143 0.857 37 H 0.153 0.847 38 H 0.395 0.605 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.032 0.968 43 H 0.262 0.738 44 H 0.026 0.974 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.491 26.725 -13.200 32.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.112 4.112 3 C -0.205 4.205 4 C -0.087 4.087 5 C -0.310 4.310 6 C -0.183 4.183 7 C -0.087 4.087 8 C -0.384 4.384 9 C 0.374 3.626 10 O -0.404 6.404 11 N -0.364 5.364 12 C 0.023 3.977 13 H 0.122 0.878 14 C -0.174 4.174 15 C -0.013 4.013 16 N -0.339 5.339 17 C -0.447 4.447 18 H 0.096 0.904 19 C -0.222 4.222 20 N -0.570 5.570 21 Si 0.907 3.093 22 H -0.230 1.230 23 H -0.227 1.227 24 H -0.213 1.213 25 C 0.001 3.999 26 S 0.468 5.532 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.161 0.839 37 H 0.170 0.830 38 H 0.229 0.771 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 9.874 26.521 -12.375 30.887 hybrid contribution 2.898 -0.189 -0.788 3.010 sum 12.773 26.332 -13.164 32.090 Atomic orbital electron populations 1.22009 0.94925 1.02476 1.02085 1.21131 0.96360 0.96029 0.97655 1.21843 1.01018 0.95511 1.02098 1.20329 1.01805 0.87639 0.98933 1.24190 1.00205 1.00833 1.05777 1.19945 1.02391 0.91496 1.04466 1.20753 0.92841 0.98592 0.96498 1.24679 1.02239 0.97353 1.14152 1.16961 0.80718 0.87025 0.77893 1.90853 1.71269 1.27684 1.50589 1.45826 1.19455 1.11525 1.59545 1.22390 0.89247 0.86193 0.99827 0.87777 1.22871 0.94488 0.99360 1.00631 1.21987 0.92089 0.93446 0.93783 1.44736 1.02037 1.34848 1.52255 1.20192 0.95510 1.05030 1.24000 0.90358 1.25884 0.99715 0.98956 0.97693 1.70885 1.32267 1.07960 1.45859 0.83810 0.76055 0.73869 0.75599 1.22971 1.22734 1.21330 1.21904 0.91201 0.94609 0.92149 1.82984 1.17357 0.97670 1.55148 0.92475 0.92326 0.92089 0.90724 0.92547 0.92375 0.92501 0.90496 0.89725 0.83944 0.82975 0.77089 0.90516 0.91047 0.93199 0.95058 0.92831 0.95672 0.93145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 8.88 37.16 0.33 -0.60 16 2 C -0.09 -0.50 2.91 -90.62 -0.26 -0.77 16 3 C -0.15 -0.64 9.19 37.16 0.34 -0.30 16 4 C -0.05 -0.28 5.12 -27.88 -0.14 -0.42 16 5 C -0.19 -1.53 4.92 -35.86 -0.18 -1.71 16 6 C -0.15 -1.32 9.99 -41.41 -0.41 -1.73 16 7 C -0.05 -0.59 10.01 -40.44 -0.40 -1.00 16 8 C -0.26 -3.22 6.45 -36.79 -0.24 -3.46 16 9 C 0.59 9.08 7.78 -12.90 -0.10 8.98 16 10 O -0.53 -10.12 16.48 5.18 0.09 -10.04 16 11 N -0.71 -10.20 5.19 -52.94 -0.27 -10.48 16 12 C 0.13 2.23 3.44 -65.66 -0.23 2.00 16 13 H 0.10 1.97 7.54 -51.93 -0.39 1.58 16 14 C -0.13 -2.18 6.60 -24.89 -0.16 -2.35 16 15 C 0.11 2.43 4.62 -3.06 -0.01 2.41 16 16 N -0.61 -15.38 3.32 -169.93 -0.56 -15.94 16 17 C -0.32 -9.44 10.56 -15.06 -0.16 -9.60 16 18 H 0.08 2.45 8.06 -52.49 -0.42 2.02 16 19 C -0.02 -0.70 5.50 -17.43 -0.10 -0.80 16 20 N -0.93 -29.70 13.70 55.49 0.76 -28.94 16 21 Si 1.07 27.00 24.53 -169.99 -4.17 22.83 16 22 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 23 H -0.30 -7.20 6.84 56.52 0.39 -6.81 16 24 H -0.29 -6.52 5.43 56.52 0.31 -6.21 16 25 C 0.13 2.74 6.93 -2.41 -0.02 2.72 16 26 S 0.20 1.78 20.50 -107.50 -2.20 -0.42 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.42 6.10 -51.93 -0.32 0.10 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 37 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 38 H 0.39 4.55 7.68 -40.82 -0.31 4.24 16 39 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 1.00 8.00 -51.93 -0.42 0.58 16 41 H 0.05 1.13 6.78 -51.93 -0.35 0.78 16 42 H 0.03 0.71 3.81 -51.93 -0.20 0.52 16 43 H 0.26 8.30 8.73 -40.82 -0.36 7.95 16 44 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -34.51 368.38 -9.73 -44.24 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.17 Total: -0.19 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -1.74 Total: -6.60 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.08 Total: -55.36 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 27.00 SS G_CDS: -4.17 Total: 22.83 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.20 Total: -0.42 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.51 -9.73 -44.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014753435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.784 kcal (2) G-P(sol) polarization free energy of solvation -34.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds