Wall clock time and date at job start Tue Mar 31 2020 13:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46855 * 2 1 4 4 C 1.52996 * 109.47788 * 119.99806 * 2 1 3 5 5 C 1.50706 * 109.46639 * 64.99901 * 4 2 1 6 6 C 1.33815 * 124.52365 * 90.00436 * 5 4 2 7 7 C 1.37467 * 115.10585 * 180.02562 * 6 5 4 8 8 C 1.36652 * 113.29473 * 0.02562 * 7 6 5 9 9 C 1.46583 * 125.46000 * 180.02562 * 8 7 6 10 10 O 1.21707 * 119.99695 * 359.97438 * 9 8 7 11 11 N 1.34768 * 120.00343 * 179.97438 * 9 8 7 12 12 C 1.46498 * 120.00312 * 179.97438 * 11 9 8 13 13 H 1.08995 * 110.88448 * 328.88047 * 12 11 9 14 14 C 1.55164 * 111.00382 * 204.99882 * 12 11 9 15 15 C 1.54331 * 102.93823 * 206.42232 * 14 12 11 16 16 N 1.47021 * 107.27039 * 22.19682 * 15 14 12 17 17 C 1.36935 * 125.64388 * 181.02363 * 16 15 14 18 18 H 1.07998 * 120.00302 * 168.93270 * 17 16 15 19 19 C 1.38813 * 120.00049 * 348.92671 * 17 16 15 20 20 N 1.31619 * 119.99946 * 165.68511 * 19 17 16 21 21 Si 1.86794 * 120.00039 * 345.68884 * 19 17 16 22 22 H 1.48507 * 109.46887 * 185.27820 * 21 19 17 23 23 H 1.48502 * 109.47200 * 305.27349 * 21 19 17 24 24 H 1.48502 * 109.47527 * 65.27854 * 21 19 17 25 25 C 1.47419 * 108.70755 * 1.28297 * 16 15 14 26 26 S 1.70618 * 124.52163 * 270.35310 * 5 4 2 27 27 H 1.09006 * 109.46848 * 299.99888 * 1 2 3 28 28 H 1.08994 * 109.47407 * 59.99705 * 1 2 3 29 29 H 1.08998 * 109.46945 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47031 * 240.00189 * 2 1 3 31 31 H 1.09007 * 109.46929 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.47229 * 299.99940 * 3 2 1 33 33 H 1.08997 * 109.47147 * 60.00260 * 3 2 1 34 34 H 1.09001 * 109.46958 * 305.00728 * 4 2 1 35 35 H 1.08996 * 109.47664 * 184.99566 * 4 2 1 36 36 H 1.08008 * 122.44707 * 0.05712 * 6 5 4 37 37 H 1.07998 * 123.35802 * 180.02562 * 7 6 5 38 38 H 0.97006 * 120.00266 * 359.97438 * 11 9 8 39 39 H 1.09002 * 110.71803 * 88.06551 * 14 12 11 40 40 H 1.08994 * 110.72079 * 324.78603 * 14 12 11 41 41 H 1.08996 * 109.88013 * 262.77676 * 15 14 12 42 42 H 1.09001 * 110.00368 * 141.68302 * 15 14 12 43 43 H 0.97003 * 119.99939 * 354.92820 * 20 19 17 44 44 H 1.08999 * 110.36652 * 94.48059 * 25 16 15 45 45 H 1.08996 * 110.36976 * 216.80949 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0402 -0.7212 1.2492 5 6 1.6415 -2.1733 1.1888 6 6 2.3829 -3.1410 0.6370 7 6 1.8317 -4.3992 0.6886 8 6 0.6109 -4.4297 1.3020 9 6 -0.2105 -5.6272 1.5022 10 8 0.1836 -6.7085 1.1065 11 7 -1.4021 -5.5307 2.1244 12 6 -2.2233 -6.7273 2.3239 13 1 -2.0683 -7.4439 1.5174 14 6 -3.7239 -6.3561 2.4574 15 6 -4.2930 -7.5158 3.3018 16 7 -3.1678 -8.1166 4.0327 17 6 -3.2483 -9.1895 4.8799 18 1 -2.3467 -9.6696 5.2305 19 6 -4.4888 -9.6600 5.2880 20 7 -4.5888 -10.8404 5.8616 21 14 -6.0163 -8.6180 5.0231 22 1 -7.1843 -9.2820 5.6557 23 1 -5.8155 -7.2803 5.6360 24 1 -6.2637 -8.4632 3.5670 25 6 -1.9396 -7.3690 3.7076 26 16 0.1807 -2.8014 1.8074 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6055 -0.2617 2.1369 35 1 3.1264 -0.6443 1.2950 36 1 3.3444 -2.9477 0.1846 37 1 2.3151 -5.2764 0.2846 38 1 -1.7161 -4.6688 2.4401 39 1 -4.2013 -6.3217 1.4781 40 1 -3.8413 -5.4060 2.9784 41 1 -4.7507 -8.2594 2.6494 42 1 -5.0325 -7.1359 4.0067 43 1 -3.8088 -11.4126 5.9329 44 1 -1.7558 -6.5976 4.4555 45 1 -1.0885 -8.0469 3.6435 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014753435.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:18 Heat of formation + Delta-G solvation = -9.542883 kcal Electronic energy + Delta-G solvation = -24332.963127 eV Core-core repulsion = 20862.500505 eV Total energy + Delta-G solvation = -3470.462622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.12265 -39.54446 -38.91730 -36.85709 -35.82141 -34.22159 -31.91761 -31.14239 -29.78318 -28.00421 -27.82065 -25.87198 -24.61028 -22.95850 -22.72168 -21.79852 -21.25697 -20.27599 -19.57104 -18.99038 -17.68596 -17.22870 -16.95839 -16.41250 -16.16122 -15.88566 -15.55946 -15.47012 -15.29603 -14.74626 -14.49907 -14.41014 -14.23301 -14.03031 -13.59111 -13.45053 -13.22511 -13.13138 -13.08642 -12.89118 -12.67169 -12.57249 -12.35160 -11.95787 -11.90220 -11.80149 -11.70813 -11.52050 -11.43827 -11.27381 -11.07447 -10.74269 -10.33775 -9.64607 -9.48964 -9.14554 -8.70082 -5.53378 -0.54600 0.43512 0.87745 1.35239 1.40734 1.51863 1.73505 1.92051 2.10652 2.55999 3.09546 3.28021 3.49801 3.65733 3.78564 3.81321 3.97962 4.02336 4.03084 4.25137 4.26481 4.38284 4.42357 4.42643 4.65493 4.71548 4.76489 4.77284 4.81968 4.84276 4.91436 4.95784 5.01899 5.05303 5.11410 5.11945 5.18837 5.30119 5.32471 5.38265 5.45643 5.50148 5.51985 6.04584 6.34626 6.77609 7.02223 7.36931 8.02414 8.82395 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.026890 B = 0.002522 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.047289 B =11101.429523 C =11702.816728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.090 4.090 3 C -0.145 4.145 4 C -0.049 4.049 5 C -0.176 4.176 6 C -0.161 4.161 7 C -0.053 4.053 8 C -0.306 4.306 9 C 0.587 3.413 10 O -0.577 6.577 11 N -0.700 5.700 12 C 0.144 3.856 13 H 0.086 0.914 14 C -0.116 4.116 15 C 0.098 3.902 16 N -0.632 5.632 17 C -0.317 4.317 18 H 0.037 0.963 19 C -0.082 4.082 20 N -0.961 5.961 21 Si 1.115 2.885 22 H -0.312 1.312 23 H -0.277 1.277 24 H -0.244 1.244 25 C 0.126 3.874 26 S 0.242 5.758 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.100 0.900 36 H 0.165 0.835 37 H 0.143 0.857 38 H 0.412 0.588 39 H 0.112 0.888 40 H 0.105 0.895 41 H 0.041 0.959 42 H 0.038 0.962 43 H 0.245 0.755 44 H 0.037 0.963 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.967 31.519 -14.588 36.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.109 4.109 3 C -0.203 4.203 4 C -0.088 4.088 5 C -0.296 4.296 6 C -0.191 4.191 7 C -0.087 4.087 8 C -0.426 4.426 9 C 0.376 3.624 10 O -0.458 6.458 11 N -0.351 5.351 12 C 0.038 3.962 13 H 0.104 0.896 14 C -0.154 4.154 15 C -0.026 4.026 16 N -0.360 5.360 17 C -0.446 4.446 18 H 0.055 0.945 19 C -0.274 4.274 20 N -0.605 5.605 21 Si 0.941 3.059 22 H -0.241 1.241 23 H -0.204 1.204 24 H -0.169 1.169 25 C -0.001 4.001 26 S 0.511 5.489 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.183 0.817 37 H 0.161 0.839 38 H 0.250 0.750 39 H 0.130 0.870 40 H 0.124 0.876 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 9.375 31.387 -13.785 35.539 hybrid contribution 3.257 -1.625 -0.349 3.656 sum 12.632 29.762 -14.134 35.286 Atomic orbital electron populations 1.22044 0.95311 1.01874 1.02588 1.21107 0.96012 0.96643 0.97162 1.21822 1.01421 0.94646 1.02368 1.20480 1.02917 0.85865 0.99550 1.24606 0.99377 1.01938 1.03690 1.20081 1.03487 0.90457 1.05088 1.20916 0.92568 0.99490 0.95739 1.24435 1.02820 0.98134 1.17163 1.17420 0.80740 0.87452 0.76818 1.90823 1.72355 1.29930 1.52694 1.45582 1.18972 1.11263 1.59284 1.21947 0.90980 0.86923 0.96374 0.89636 1.22864 0.92319 0.98424 1.01832 1.22223 0.91354 0.95022 0.94015 1.44763 1.04735 1.34511 1.51994 1.20041 0.94171 1.06045 1.24313 0.94492 1.27407 1.03387 0.99209 0.97397 1.71006 1.31605 1.09350 1.48560 0.83372 0.71575 0.72878 0.78124 1.24144 1.20388 1.16893 1.22006 0.88945 0.94086 0.95070 1.82757 1.17327 0.94679 1.54125 0.91885 0.92051 0.93139 0.91166 0.91933 0.92275 0.92113 0.89520 0.88203 0.81742 0.83896 0.75049 0.86982 0.87630 0.94079 0.94512 0.94593 0.94548 0.96291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.88 71.98 0.64 -0.78 16 2 C -0.09 -0.69 2.91 -10.79 -0.03 -0.72 16 3 C -0.15 -0.81 9.19 71.98 0.66 -0.15 16 4 C -0.05 -0.39 5.12 29.85 0.15 -0.24 16 5 C -0.18 -2.30 4.92 24.68 0.12 -2.18 16 6 C -0.16 -2.44 9.99 21.08 0.21 -2.23 16 7 C -0.05 -1.12 10.01 21.72 0.22 -0.91 16 8 C -0.31 -7.16 6.45 24.08 0.16 -7.00 16 9 C 0.59 18.01 7.78 86.42 0.67 18.69 16 10 O -0.58 -23.00 16.48 -4.37 -0.07 -23.07 16 11 N -0.70 -18.85 5.19 -439.64 -2.28 -21.13 16 12 C 0.14 4.81 3.44 46.47 0.16 4.97 16 13 H 0.09 3.23 7.54 -2.39 -0.02 3.21 16 14 C -0.12 -3.29 6.60 31.79 0.21 -3.08 16 15 C 0.10 3.99 4.62 86.73 0.40 4.39 16 16 N -0.63 -31.94 3.32 -691.55 -2.30 -34.23 16 17 C -0.32 -19.42 10.56 84.03 0.89 -18.53 16 18 H 0.04 2.49 8.06 -2.91 -0.02 2.46 16 19 C -0.08 -5.04 5.50 84.86 0.47 -4.58 16 20 N -0.96 -63.91 13.70 21.65 0.30 -63.62 16 21 Si 1.11 53.55 24.53 68.60 1.68 55.23 16 22 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 23 H -0.28 -12.24 6.84 99.48 0.68 -11.55 16 24 H -0.24 -10.09 5.43 99.48 0.54 -9.55 16 25 C 0.13 5.40 6.93 86.94 0.60 6.01 16 26 S 0.24 3.66 20.50 -56.49 -1.16 2.50 16 27 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 28 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.55 6.10 -2.39 -0.01 0.54 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.61 16 31 H 0.06 0.29 8.14 -2.38 -0.02 0.27 16 32 H 0.06 0.33 8.14 -2.38 -0.02 0.31 16 33 H 0.06 0.30 8.14 -2.39 -0.02 0.29 16 34 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.17 1.70 8.06 -2.91 -0.02 1.67 16 37 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 38 H 0.41 8.21 7.68 -92.70 -0.71 7.49 16 39 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.11 2.33 8.00 -2.39 -0.02 2.31 16 41 H 0.04 1.75 6.78 -2.39 -0.02 1.73 16 42 H 0.04 1.51 3.81 -2.39 -0.01 1.50 16 43 H 0.25 16.51 8.73 -92.71 -0.81 15.70 16 44 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -80.13 368.38 1.74 -78.39 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.04 Total: 12.27 kcal Atomic # 6 Polarization: -11.87 SS G_CDS: 5.53 Total: -6.34 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -4.28 Total: -118.98 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: -0.07 Total: -23.07 kcal Atomic # 14 Polarization: 53.55 SS G_CDS: 1.68 Total: 55.23 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.16 Total: 2.50 kcal Total: -80.13 1.74 -78.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014753435.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.846 kcal (2) G-P(sol) polarization free energy of solvation -80.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds