Wall clock time and date at job start Tue Mar 31 2020 13:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46879 * 2 1 4 4 C 1.53000 * 109.47220 * 119.99806 * 2 1 3 5 5 C 1.50693 * 109.47159 * 65.00380 * 4 2 1 6 6 C 1.33815 * 124.52751 * 89.99930 * 5 4 2 7 7 C 1.37466 * 115.10734 * 179.97438 * 6 5 4 8 8 C 1.36651 * 113.29644 * 359.97438 * 7 6 5 9 9 C 1.46581 * 125.45819 * 180.02562 * 8 7 6 10 10 O 1.21706 * 120.00169 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99817 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99796 * 179.97438 * 11 9 8 13 13 H 1.08993 * 110.88715 * 31.11705 * 12 11 9 14 14 C 1.55159 * 111.00248 * 155.00033 * 12 11 9 15 15 C 1.54320 * 102.94349 * 82.57245 * 14 12 11 16 16 N 1.47018 * 107.27210 * 22.19183 * 15 14 12 17 17 C 1.36945 * 125.64695 * 181.02594 * 16 15 14 18 18 H 1.08000 * 119.99441 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00031 * 0.02562 * 17 16 15 20 20 N 1.31619 * 120.00283 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46722 * 90.00437 * 21 19 17 23 23 H 1.48497 * 109.47157 * 210.00127 * 21 19 17 24 24 H 1.48494 * 109.47346 * 330.00290 * 21 19 17 25 25 C 1.47421 * 108.70379 * 1.28563 * 16 15 14 26 26 S 1.70625 * 124.52305 * 270.27499 * 5 4 2 27 27 H 1.09005 * 109.47221 * 60.00270 * 1 2 3 28 28 H 1.09007 * 109.46872 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47353 * 299.99885 * 1 2 3 30 30 H 1.09000 * 109.47435 * 240.00082 * 2 1 3 31 31 H 1.09001 * 109.47118 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47062 * 299.99718 * 3 2 1 33 33 H 1.09000 * 109.47020 * 59.99828 * 3 2 1 34 34 H 1.08996 * 109.47262 * 305.00112 * 4 2 1 35 35 H 1.09008 * 109.47279 * 185.00178 * 4 2 1 36 36 H 1.08005 * 122.44531 * 359.94405 * 6 5 4 37 37 H 1.07998 * 123.35462 * 179.97438 * 7 6 5 38 38 H 0.97002 * 120.00333 * 359.97438 * 11 9 8 39 39 H 1.08996 * 110.71852 * 324.20747 * 14 12 11 40 40 H 1.08998 * 110.86977 * 201.00616 * 14 12 11 41 41 H 1.09010 * 109.88205 * 262.77471 * 15 14 12 42 42 H 1.09004 * 110.01290 * 141.68524 * 15 14 12 43 43 H 0.96998 * 120.00243 * 179.97438 * 20 19 17 44 44 H 1.08996 * 110.36244 * 94.48455 * 25 16 15 45 45 H 1.08997 * 110.36930 * 216.80538 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 -2.1732 1.1889 6 6 2.3828 -3.1410 0.6372 7 6 1.8322 -4.3994 0.6898 8 6 0.6123 -4.4303 1.3050 9 6 -0.2083 -5.6280 1.5065 10 8 0.1856 -6.7093 1.1105 11 7 -1.3995 -5.5316 2.1295 12 6 -2.2200 -6.7286 2.3305 13 1 -1.5943 -7.6129 2.4507 14 6 -3.1729 -6.5526 3.5423 15 6 -4.3586 -5.7707 2.9389 16 7 -4.3438 -6.0065 1.4878 17 6 -5.2229 -5.4727 0.5835 18 1 -5.1275 -5.7087 -0.4661 19 6 -6.2363 -4.6284 1.0159 20 7 -6.3521 -4.3404 2.2949 21 14 -7.4348 -3.8998 -0.2178 22 1 -8.5983 -4.8093 -0.3741 23 1 -7.9025 -2.5769 0.2683 24 1 -6.7566 -3.7340 -1.5284 25 6 -3.2299 -6.9178 1.1683 26 16 0.1814 -2.8018 1.8091 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6054 -0.2617 2.1370 35 1 3.1264 -0.6443 1.2952 36 1 3.3435 -2.9473 0.1832 37 1 2.3154 -5.2764 0.2852 38 1 -1.7137 -4.6697 2.4449 39 1 -2.6912 -5.9747 4.3309 40 1 -3.5019 -7.5202 3.9212 41 1 -4.2427 -4.7061 3.1426 42 1 -5.2965 -6.1291 3.3632 43 1 -7.0600 -3.7501 2.5970 44 1 -3.5817 -7.9488 1.1324 45 1 -2.7720 -6.6390 0.2192 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001014753436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:23 Heat of formation + Delta-G solvation = 2.888613 kcal Electronic energy + Delta-G solvation = -24896.748174 eV Core-core repulsion = 21426.824622 eV Total energy + Delta-G solvation = -3469.923552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.63021 -38.37062 -37.18494 -36.02136 -33.73931 -31.91230 -30.72811 -29.20801 -27.68419 -27.38469 -26.54530 -24.49426 -23.71396 -21.79039 -20.55983 -20.11310 -19.86461 -19.01333 -17.90725 -16.86988 -16.09133 -15.92659 -15.30903 -14.91066 -14.67687 -14.58744 -14.47200 -13.82543 -13.78942 -13.66332 -13.21924 -12.79964 -12.64439 -12.44855 -12.28814 -12.20083 -11.95257 -11.90477 -11.81749 -11.22523 -11.10693 -10.96091 -10.95024 -10.90988 -10.83282 -10.71803 -10.36213 -10.13985 -9.96475 -9.74226 -9.68037 -8.84826 -8.64977 -8.55755 -8.47811 -6.82451 -5.72240 -3.04787 0.52459 1.45336 1.89013 2.39664 3.38571 3.39701 3.45282 3.46680 3.49700 4.42082 4.50044 4.59908 4.65193 4.99039 5.02116 5.12111 5.28893 5.31622 5.35963 5.43405 5.45717 5.47958 5.48336 5.58394 5.66607 5.70862 5.76397 5.83071 5.89729 5.93661 6.06435 6.12739 6.14909 6.19542 6.34376 6.35782 6.48831 6.49949 6.69030 7.01223 7.52798 7.55191 7.78451 7.82103 8.24325 8.44473 9.21792 9.81644 10.47387 11.39709 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011135 B = 0.003946 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.098518 B = 7094.385764 C = 8882.998145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.047 4.047 5 C -0.196 4.196 6 C -0.154 4.154 7 C -0.059 4.059 8 C -0.263 4.263 9 C 0.588 3.412 10 O -0.540 6.540 11 N -0.698 5.698 12 C 0.128 3.872 13 H 0.093 0.907 14 C -0.154 4.154 15 C 0.175 3.825 16 N -0.604 5.604 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.923 5.923 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.125 3.875 26 S 0.216 5.784 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.140 0.860 37 H 0.150 0.850 38 H 0.400 0.600 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.251 0.749 44 H 0.030 0.970 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.041 8.074 0.780 19.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.086 4.086 5 C -0.316 4.316 6 C -0.185 4.185 7 C -0.092 4.092 8 C -0.383 4.383 9 C 0.374 3.626 10 O -0.420 6.420 11 N -0.348 5.348 12 C 0.023 3.977 13 H 0.111 0.889 14 C -0.193 4.193 15 C 0.050 3.950 16 N -0.331 5.331 17 C -0.353 4.353 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.571 5.571 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.208 1.208 25 C -0.003 4.003 26 S 0.485 5.515 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.158 0.842 37 H 0.168 0.832 38 H 0.235 0.765 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 16.838 8.073 1.267 18.716 hybrid contribution 0.359 0.220 -1.280 1.348 sum 17.197 8.293 -0.013 19.092 Atomic orbital electron populations 1.22016 0.94662 1.02803 1.02139 1.21132 0.96523 0.95881 0.97617 1.21838 1.00804 0.95657 1.02093 1.20305 1.01527 0.87779 0.98948 1.24225 1.00373 1.00778 1.06253 1.19892 1.02346 0.91549 1.04702 1.20682 0.93053 0.98480 0.97007 1.24724 1.01949 0.97605 1.14057 1.16934 0.80738 0.86949 0.77966 1.90790 1.72464 1.27795 1.50966 1.45720 1.18294 1.12062 1.58700 1.22212 0.91304 0.87060 0.97144 0.88939 1.23234 0.98004 1.01808 0.96276 1.21184 0.93278 0.97165 0.83364 1.44481 1.31864 1.53457 1.03268 1.19062 1.05468 1.21843 0.88908 0.90554 1.24758 0.99111 1.00231 0.96272 1.69947 1.34458 1.40250 1.12477 0.86141 0.81219 0.78389 0.80176 1.21632 1.21695 1.20752 1.21994 0.88473 0.94076 0.95722 1.83296 1.16402 0.97526 1.54304 0.92308 0.91890 0.92440 0.90791 0.92685 0.92402 0.92534 0.90574 0.89922 0.84189 0.83209 0.76533 0.91598 0.90753 0.93623 0.93641 0.93818 0.95235 0.93901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 8.88 37.16 0.33 -1.20 16 2 C -0.09 -0.76 2.91 -90.62 -0.26 -1.02 16 3 C -0.15 -0.98 9.19 37.16 0.34 -0.64 16 4 C -0.05 -0.38 5.12 -27.89 -0.14 -0.52 16 5 C -0.20 -2.08 4.92 -35.86 -0.18 -2.26 16 6 C -0.15 -1.66 9.99 -41.42 -0.41 -2.08 16 7 C -0.06 -0.77 10.01 -40.44 -0.40 -1.18 16 8 C -0.26 -3.91 6.45 -36.79 -0.24 -4.15 16 9 C 0.59 10.44 7.78 -12.90 -0.10 10.34 16 10 O -0.54 -10.96 16.48 5.18 0.09 -10.88 16 11 N -0.70 -12.29 5.19 -52.95 -0.27 -12.57 16 12 C 0.13 2.36 3.43 -65.66 -0.23 2.13 16 13 H 0.09 1.64 7.54 -51.93 -0.39 1.25 16 14 C -0.15 -2.77 6.54 -24.90 -0.16 -2.93 16 15 C 0.17 4.08 5.37 -3.07 -0.02 4.06 16 16 N -0.60 -15.23 3.39 -169.94 -0.58 -15.81 16 17 C -0.22 -6.25 10.28 -15.06 -0.15 -6.40 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 20 N -0.92 -26.52 10.31 55.49 0.57 -25.95 16 21 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.12 2.70 6.95 -2.41 -0.02 2.68 16 26 S 0.22 2.68 20.51 -107.50 -2.20 0.48 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.71 6.11 -51.93 -0.32 0.40 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.14 1.18 8.06 -52.48 -0.42 0.76 16 37 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 38 H 0.40 6.81 7.78 -40.82 -0.32 6.50 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 41 H 0.05 1.15 7.38 -51.92 -0.38 0.77 16 42 H 0.05 1.18 7.50 -51.93 -0.39 0.79 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 376.33 15.07 5.67 5.67 Total: -1.00 -31.31 376.33 -10.75 -42.07 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -7.26 Total: 3.43 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.74 Total: -3.48 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.28 Total: -54.32 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 2.68 SS G_CDS: -2.20 Total: 0.48 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.31 -10.75 -42.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014753436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.955 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.066 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds