Wall clock time and date at job start Tue Mar 31 2020 13:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46879 * 2 1 4 4 C 1.53000 * 109.47220 * 119.99806 * 2 1 3 5 5 C 1.50693 * 109.47159 * 65.00380 * 4 2 1 6 6 C 1.33815 * 124.52751 * 89.99930 * 5 4 2 7 7 C 1.37466 * 115.10734 * 179.97438 * 6 5 4 8 8 C 1.36651 * 113.29644 * 359.97438 * 7 6 5 9 9 C 1.46581 * 125.45819 * 180.02562 * 8 7 6 10 10 O 1.21706 * 120.00169 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99817 * 180.02562 * 9 8 7 12 12 C 1.46501 * 119.99796 * 179.97438 * 11 9 8 13 13 H 1.08993 * 110.88715 * 31.11705 * 12 11 9 14 14 C 1.55159 * 111.00248 * 155.00033 * 12 11 9 15 15 C 1.54320 * 102.94349 * 82.57245 * 14 12 11 16 16 N 1.47018 * 107.27210 * 22.19183 * 15 14 12 17 17 C 1.36945 * 125.64695 * 181.02594 * 16 15 14 18 18 H 1.08000 * 119.99441 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00031 * 0.02562 * 17 16 15 20 20 N 1.31619 * 120.00283 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46722 * 90.00437 * 21 19 17 23 23 H 1.48497 * 109.47157 * 210.00127 * 21 19 17 24 24 H 1.48494 * 109.47346 * 330.00290 * 21 19 17 25 25 C 1.47421 * 108.70379 * 1.28563 * 16 15 14 26 26 S 1.70625 * 124.52305 * 270.27499 * 5 4 2 27 27 H 1.09005 * 109.47221 * 60.00270 * 1 2 3 28 28 H 1.09007 * 109.46872 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47353 * 299.99885 * 1 2 3 30 30 H 1.09000 * 109.47435 * 240.00082 * 2 1 3 31 31 H 1.09001 * 109.47118 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47062 * 299.99718 * 3 2 1 33 33 H 1.09000 * 109.47020 * 59.99828 * 3 2 1 34 34 H 1.08996 * 109.47262 * 305.00112 * 4 2 1 35 35 H 1.09008 * 109.47279 * 185.00178 * 4 2 1 36 36 H 1.08005 * 122.44531 * 359.94405 * 6 5 4 37 37 H 1.07998 * 123.35462 * 179.97438 * 7 6 5 38 38 H 0.97002 * 120.00333 * 359.97438 * 11 9 8 39 39 H 1.08996 * 110.71852 * 324.20747 * 14 12 11 40 40 H 1.08998 * 110.86977 * 201.00616 * 14 12 11 41 41 H 1.09010 * 109.88205 * 262.77471 * 15 14 12 42 42 H 1.09004 * 110.01290 * 141.68524 * 15 14 12 43 43 H 0.96998 * 120.00243 * 179.97438 * 20 19 17 44 44 H 1.08996 * 110.36244 * 94.48455 * 25 16 15 45 45 H 1.08997 * 110.36930 * 216.80538 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6414 -2.1732 1.1889 6 6 2.3828 -3.1410 0.6372 7 6 1.8322 -4.3994 0.6898 8 6 0.6123 -4.4303 1.3050 9 6 -0.2083 -5.6280 1.5065 10 8 0.1856 -6.7093 1.1105 11 7 -1.3995 -5.5316 2.1295 12 6 -2.2200 -6.7286 2.3305 13 1 -1.5943 -7.6129 2.4507 14 6 -3.1729 -6.5526 3.5423 15 6 -4.3586 -5.7707 2.9389 16 7 -4.3438 -6.0065 1.4878 17 6 -5.2229 -5.4727 0.5835 18 1 -5.1275 -5.7087 -0.4661 19 6 -6.2363 -4.6284 1.0159 20 7 -6.3521 -4.3404 2.2949 21 14 -7.4348 -3.8998 -0.2178 22 1 -8.5983 -4.8093 -0.3741 23 1 -7.9025 -2.5769 0.2683 24 1 -6.7566 -3.7340 -1.5284 25 6 -3.2299 -6.9178 1.1683 26 16 0.1814 -2.8018 1.8091 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6054 -0.2617 2.1370 35 1 3.1264 -0.6443 1.2952 36 1 3.3435 -2.9473 0.1832 37 1 2.3154 -5.2764 0.2852 38 1 -1.7137 -4.6697 2.4449 39 1 -2.6912 -5.9747 4.3309 40 1 -3.5019 -7.5202 3.9212 41 1 -4.2427 -4.7061 3.1426 42 1 -5.2965 -6.1291 3.3632 43 1 -7.0600 -3.7501 2.5970 44 1 -3.5817 -7.9488 1.1324 45 1 -2.7720 -6.6390 0.2192 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001014753436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:22 Heat of formation + Delta-G solvation = -14.801053 kcal Electronic energy + Delta-G solvation = -24897.515256 eV Core-core repulsion = 21426.824622 eV Total energy + Delta-G solvation = -3470.690633 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.02655 -39.40234 -38.69086 -36.84351 -35.45610 -33.72093 -31.74495 -30.96752 -29.20960 -28.03987 -27.73740 -26.38837 -24.67135 -23.04307 -21.97048 -21.42766 -21.25230 -20.16246 -19.03799 -18.77296 -17.40911 -17.09579 -16.66604 -16.26912 -16.15117 -15.75434 -15.58711 -15.31920 -15.16689 -14.65388 -14.41601 -14.13373 -13.87772 -13.61850 -13.56563 -13.37844 -13.17818 -12.91046 -12.89587 -12.83163 -12.66341 -12.34119 -12.12271 -12.04402 -11.93224 -11.87017 -11.83624 -11.71447 -11.62372 -11.53146 -11.15562 -10.73054 -10.22488 -9.61445 -9.50519 -8.87345 -7.85477 -5.19910 -0.49858 0.46848 0.93968 1.39671 1.45273 1.46262 1.54924 2.07633 2.20053 2.48635 3.33407 3.64708 3.65877 3.70228 3.89869 3.96069 4.01079 4.03812 4.25899 4.28539 4.38320 4.43596 4.64713 4.69255 4.72098 4.75380 4.80252 4.85941 4.92751 4.94117 5.00002 5.00523 5.04080 5.12086 5.19804 5.28733 5.37753 5.43317 5.45162 5.48363 5.50967 5.65252 5.75169 6.19073 6.42593 7.06524 7.11166 7.76012 8.40470 9.24478 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.011135 B = 0.003946 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2514.098518 B = 7094.385764 C = 8882.998145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.088 4.088 3 C -0.143 4.143 4 C -0.047 4.047 5 C -0.176 4.176 6 C -0.158 4.158 7 C -0.049 4.049 8 C -0.304 4.304 9 C 0.588 3.412 10 O -0.574 6.574 11 N -0.699 5.699 12 C 0.139 3.861 13 H 0.107 0.893 14 C -0.135 4.135 15 C 0.183 3.817 16 N -0.620 5.620 17 C -0.244 4.244 18 H 0.072 0.928 19 C -0.056 4.056 20 N -0.945 5.945 21 Si 0.973 3.027 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.275 1.275 25 C 0.122 3.878 26 S 0.209 5.791 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.108 0.892 36 H 0.171 0.829 37 H 0.152 0.848 38 H 0.402 0.598 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.019 0.981 42 H 0.013 0.987 43 H 0.248 0.752 44 H 0.037 0.963 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.993 9.411 0.698 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.108 4.108 3 C -0.201 4.201 4 C -0.086 4.086 5 C -0.296 4.296 6 C -0.188 4.188 7 C -0.084 4.084 8 C -0.424 4.424 9 C 0.376 3.624 10 O -0.456 6.456 11 N -0.348 5.348 12 C 0.034 3.966 13 H 0.125 0.875 14 C -0.173 4.173 15 C 0.059 3.941 16 N -0.347 5.347 17 C -0.373 4.373 18 H 0.090 0.910 19 C -0.250 4.250 20 N -0.593 5.593 21 Si 0.801 3.199 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.200 1.200 25 C -0.005 4.005 26 S 0.478 5.522 27 H 0.078 0.922 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.189 0.811 37 H 0.169 0.831 38 H 0.237 0.763 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.038 0.962 42 H 0.031 0.969 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 18.804 9.407 1.189 21.059 hybrid contribution -0.202 -0.140 -1.307 1.330 sum 18.601 9.267 -0.117 20.782 Atomic orbital electron populations 1.22056 0.96160 1.01469 1.02352 1.21101 0.95171 0.97021 0.97461 1.21808 1.01656 0.94305 1.02282 1.20466 1.03114 0.85806 0.99221 1.24610 0.98756 1.02073 1.04184 1.20127 1.03517 0.90357 1.04789 1.20935 0.92252 0.99658 0.95505 1.24528 1.02880 0.97722 1.17272 1.17305 0.80616 0.87517 0.76943 1.90753 1.73197 1.29283 1.52364 1.45721 1.18349 1.11868 1.58889 1.22072 0.90896 0.88083 0.95583 0.87494 1.23102 0.95458 1.02420 0.96339 1.20969 0.94133 0.96344 0.82694 1.44700 1.32328 1.53855 1.03845 1.19344 1.06294 1.22207 0.89413 0.90980 1.25505 1.00690 1.00786 0.98004 1.70141 1.34762 1.40565 1.13876 0.85167 0.78982 0.77358 0.78343 1.21381 1.21629 1.19977 1.22109 0.88356 0.93595 0.96397 1.83321 1.17898 0.96344 1.54617 0.92246 0.93927 0.92191 0.90994 0.91294 0.92419 0.92223 0.89869 0.87411 0.81128 0.83072 0.76314 0.88983 0.88624 0.96233 0.96922 0.94274 0.94520 0.95581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 8.88 71.98 0.64 -2.32 16 2 C -0.09 -1.22 2.91 -10.79 -0.03 -1.25 16 3 C -0.14 -1.49 9.19 71.98 0.66 -0.83 16 4 C -0.05 -0.62 5.12 29.85 0.15 -0.47 16 5 C -0.18 -3.34 4.92 24.68 0.12 -3.21 16 6 C -0.16 -3.02 9.99 21.08 0.21 -2.81 16 7 C -0.05 -1.23 10.01 21.72 0.22 -1.02 16 8 C -0.30 -8.99 6.45 24.08 0.16 -8.84 16 9 C 0.59 21.04 7.78 86.42 0.67 21.71 16 10 O -0.57 -23.51 16.48 -4.37 -0.07 -23.58 16 11 N -0.70 -24.71 5.19 -439.64 -2.28 -26.99 16 12 C 0.14 5.06 3.43 46.46 0.16 5.22 16 13 H 0.11 3.66 7.54 -2.39 -0.02 3.64 16 14 C -0.13 -4.69 6.54 31.78 0.21 -4.48 16 15 C 0.18 8.72 5.37 86.73 0.47 9.19 16 16 N -0.62 -32.00 3.39 -691.56 -2.35 -34.35 16 17 C -0.24 -13.86 10.28 84.03 0.86 -12.99 16 18 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 19 C -0.06 -3.19 5.49 84.86 0.47 -2.72 16 20 N -0.94 -55.49 10.31 21.65 0.22 -55.27 16 21 Si 0.97 45.89 29.55 68.60 2.03 47.91 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 25 C 0.12 5.34 6.95 86.93 0.60 5.95 16 26 S 0.21 5.07 20.51 -56.49 -1.16 3.91 16 27 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.04 0.94 6.11 -2.38 -0.01 0.93 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.17 2.20 8.06 -2.91 -0.02 2.18 16 37 H 0.15 3.66 8.06 -2.91 -0.02 3.64 16 38 H 0.40 13.85 7.78 -92.71 -0.72 13.13 16 39 H 0.09 2.75 8.14 -2.39 -0.02 2.74 16 40 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 41 H 0.02 1.02 7.38 -2.38 -0.02 1.00 16 42 H 0.01 0.67 7.50 -2.38 -0.02 0.66 16 43 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -69.01 376.33 2.21 -66.79 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.26 Total: 20.44 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 5.57 Total: 1.12 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -4.41 Total: -116.60 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.07 Total: -23.58 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -1.16 Total: 3.91 kcal Total: -69.01 2.21 -66.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001014753436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.992 kcal (2) G-P(sol) polarization free energy of solvation -69.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds