Wall clock time and date at job start Tue Mar 31 2020 13:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50703 * 109.47466 * 180.02562 * 3 2 1 5 5 C 1.37474 * 122.44622 * 265.02613 * 4 3 2 6 6 C 1.36649 * 113.29030 * 179.97438 * 5 4 3 7 7 C 1.46585 * 125.45487 * 179.97438 * 6 5 4 8 8 O 1.21708 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00118 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99959 * 179.97438 * 9 7 6 11 11 H 1.08996 * 110.88787 * 328.89094 * 10 9 7 12 12 C 1.55153 * 111.00153 * 205.00214 * 10 9 7 13 13 C 1.54322 * 102.94484 * 277.42967 * 12 10 9 14 14 N 1.47023 * 107.27109 * 337.81124 * 13 12 10 15 15 C 1.36937 * 125.64829 * 178.89215 * 14 13 12 16 16 H 1.08002 * 120.00163 * 180.02562 * 15 14 13 17 17 C 1.38813 * 120.00202 * 0.02562 * 15 14 13 18 18 N 1.31623 * 119.99906 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00121 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46901 * 90.00109 * 19 17 15 21 21 H 1.48498 * 109.46985 * 209.99741 * 19 17 15 22 22 H 1.48490 * 109.47080 * 330.00112 * 19 17 15 23 23 C 1.47426 * 108.70260 * 358.93906 * 14 13 12 24 24 S 1.75828 * 109.08841 * 359.97438 * 6 5 4 25 25 C 1.33814 * 122.44896 * 84.73826 * 4 3 2 26 26 C 1.50704 * 124.52054 * 0.02562 * 25 4 3 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 34 34 H 1.07993 * 123.35419 * 359.93873 * 5 4 3 35 35 H 0.96996 * 119.99489 * 0.02562 * 9 7 6 36 36 H 1.08991 * 110.72274 * 35.79709 * 12 10 9 37 37 H 1.09008 * 110.71637 * 159.07282 * 12 10 9 38 38 H 1.09008 * 109.88131 * 97.22438 * 13 12 10 39 39 H 1.08999 * 109.89029 * 218.23949 * 13 12 10 40 40 H 0.96998 * 120.00129 * 179.97438 * 18 17 15 41 41 H 1.08994 * 110.36277 * 265.28614 * 23 14 13 42 42 H 1.09002 * 110.36355 * 142.96943 * 23 14 13 43 43 H 1.08996 * 109.47144 * 89.99926 * 26 25 4 44 44 H 1.09003 * 109.46684 * 210.00008 * 26 25 4 45 45 H 1.09000 * 109.46869 * 329.99567 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2851 1.5429 1.1548 6 6 5.6341 1.5236 0.9377 7 6 6.6640 1.6143 1.9768 8 8 6.3415 1.7173 3.1459 9 7 7.9680 1.5838 1.6377 10 6 8.9973 1.6751 2.6763 11 1 8.6501 2.2775 3.5156 12 6 10.3224 2.2380 2.0979 13 6 10.9830 0.9920 1.4713 14 7 10.4024 -0.1875 2.1297 15 6 10.7071 -1.4917 1.8442 16 1 10.2232 -2.2905 2.3865 17 6 11.6380 -1.7870 0.8577 18 7 12.2274 -0.8136 0.1963 19 14 12.0531 -3.5661 0.4677 20 1 11.1407 -4.0665 -0.5917 21 1 13.4576 -3.6542 -0.0065 22 1 11.8910 -4.3918 1.6912 23 6 9.4371 0.2664 3.1473 24 16 5.9366 1.3724 -0.7877 25 6 4.2646 1.3391 -1.1254 26 6 3.6744 1.2127 -2.5063 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.8428 1.6291 2.1363 35 1 8.2250 1.5021 0.7060 36 1 10.1216 2.9918 1.3368 37 1 10.9468 2.6471 2.8923 38 1 10.7742 0.9599 0.4019 39 1 12.0598 1.0198 1.6380 40 1 12.8781 -1.0199 -0.4928 41 1 9.9159 0.3254 4.1246 42 1 8.5801 -0.4062 3.1838 43 1 3.5324 2.2055 -2.9331 44 1 4.3509 0.6384 -3.1393 45 1 2.7131 0.7025 -2.4452 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016211217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:27 Heat of formation + Delta-G solvation = 0.521131 kcal Electronic energy + Delta-G solvation = -24751.921391 eV Core-core repulsion = 21281.895177 eV Total energy + Delta-G solvation = -3470.026214 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.71819 -38.74477 -37.13999 -34.37976 -33.73856 -32.23535 -31.65903 -29.28205 -28.68459 -27.39436 -25.84897 -24.47832 -23.49886 -22.08965 -20.63717 -20.09202 -19.85015 -18.70278 -17.91091 -16.91198 -16.29072 -15.82132 -15.00283 -14.87733 -14.74186 -14.61492 -14.23723 -13.89140 -13.75960 -13.57410 -13.30763 -13.13108 -12.84763 -12.52662 -12.30191 -12.03780 -11.98756 -11.90964 -11.81766 -11.49739 -11.32067 -10.97147 -10.92285 -10.88867 -10.74223 -10.68514 -10.36973 -10.13532 -9.96539 -9.74312 -9.67809 -8.82663 -8.64056 -8.52879 -8.39133 -6.82366 -5.72093 -3.04641 0.53058 1.46507 1.88863 2.32601 3.37633 3.39760 3.45368 3.47061 3.48980 4.50176 4.59781 4.67482 4.78510 4.89863 4.97223 5.06349 5.25570 5.28626 5.32101 5.36964 5.43794 5.46195 5.48062 5.57242 5.59185 5.68915 5.76842 5.77335 5.83106 5.86330 5.93870 6.08971 6.18577 6.27528 6.35947 6.39214 6.48774 6.49950 6.69182 7.01320 7.52987 7.55157 7.78546 7.82124 8.24369 8.44480 9.21920 9.81720 10.47486 11.39885 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.003267 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.258924 B = 8568.086885 C = 9344.650442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.057 4.057 4 C -0.121 4.121 5 C -0.053 4.053 6 C -0.259 4.259 7 C 0.589 3.411 8 O -0.540 6.540 9 N -0.699 5.699 10 C 0.128 3.872 11 H 0.093 0.907 12 C -0.154 4.154 13 C 0.175 3.825 14 N -0.604 5.604 15 C -0.224 4.224 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.924 5.924 19 Si 0.911 3.089 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.125 3.875 24 S 0.210 5.790 25 C -0.203 4.203 26 C -0.085 4.085 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.150 0.850 35 H 0.400 0.600 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.045 0.955 39 H 0.045 0.955 40 H 0.251 0.749 41 H 0.030 0.970 42 H 0.043 0.957 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.188 7.635 -4.742 21.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.096 4.096 4 C -0.134 4.134 5 C -0.086 4.086 6 C -0.379 4.379 7 C 0.375 3.625 8 O -0.420 6.420 9 N -0.348 5.348 10 C 0.023 3.977 11 H 0.111 0.889 12 C -0.193 4.193 13 C 0.050 3.950 14 N -0.331 5.331 15 C -0.352 4.352 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.572 5.572 19 Si 0.742 3.258 20 H -0.217 1.217 21 H -0.217 1.217 22 H -0.207 1.207 23 C -0.003 4.003 24 S 0.480 5.520 25 C -0.322 4.322 26 C -0.143 4.143 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.167 0.833 35 H 0.235 0.765 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -17.873 7.510 -4.953 20.010 hybrid contribution -0.791 -0.996 0.146 1.281 sum -18.664 6.514 -4.807 20.345 Atomic orbital electron populations 1.21785 0.95734 1.01680 1.01744 1.21527 0.95478 0.96274 1.02616 1.20306 0.89263 0.97311 1.02743 1.18594 0.97252 1.06207 0.91361 1.20544 0.90916 0.97498 0.99630 1.24602 0.98063 1.17986 0.97261 1.16919 0.81802 0.76622 0.87199 1.90790 1.81808 1.51039 1.18362 1.45729 1.04822 1.73119 1.11131 1.22193 0.86894 0.98418 0.90209 0.88920 1.23242 0.95383 0.99947 1.00754 1.21178 0.96276 0.81958 0.95550 1.44477 1.46057 1.02311 1.40211 1.19058 1.18869 0.81767 1.15519 0.90551 1.24772 0.99282 0.97576 0.98851 1.69949 1.31100 1.29345 1.26766 0.86127 0.77393 0.84211 0.78111 1.21661 1.21704 1.20735 1.21954 0.92934 0.92711 0.92659 1.83275 1.02668 1.67201 0.98875 1.24034 0.98724 1.09184 1.00301 1.20391 1.01125 1.02703 0.90110 0.92667 0.92712 0.92816 0.91655 0.91871 0.91080 0.90940 0.83255 0.76525 0.91569 0.90746 0.93639 0.93647 0.93816 0.95249 0.93901 0.90618 0.91084 0.90322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.16 0.37 -0.64 16 2 C -0.12 -0.98 5.85 -26.73 -0.16 -1.14 16 3 C -0.06 -0.48 4.82 -27.88 -0.13 -0.62 16 4 C -0.12 -1.36 5.04 -106.45 -0.54 -1.89 16 5 C -0.05 -0.71 9.78 -40.43 -0.40 -1.10 16 6 C -0.26 -3.90 6.45 -36.79 -0.24 -4.14 16 7 C 0.59 10.50 7.78 -12.89 -0.10 10.40 16 8 O -0.54 -10.99 16.48 5.18 0.09 -10.91 16 9 N -0.70 -12.36 5.18 -53.06 -0.28 -12.64 16 10 C 0.13 2.37 3.43 -65.78 -0.23 2.14 16 11 H 0.09 1.64 7.54 -51.93 -0.39 1.25 16 12 C -0.15 -2.78 6.55 -24.90 -0.16 -2.94 16 13 C 0.18 4.10 5.36 -3.06 -0.02 4.08 16 14 N -0.60 -15.29 3.39 -170.07 -0.58 -15.86 16 15 C -0.22 -6.25 10.28 -15.06 -0.15 -6.40 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.25 5.49 -17.43 -0.10 -0.35 16 18 N -0.92 -26.64 10.31 55.49 0.57 -26.06 16 19 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 C 0.12 2.71 6.93 -2.53 -0.02 2.69 16 24 S 0.21 2.66 22.10 -107.50 -2.38 0.29 16 25 C -0.20 -2.21 6.28 -35.86 -0.23 -2.44 16 26 C -0.08 -0.67 9.71 36.01 0.35 -0.32 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.52 7.21 -51.93 -0.37 0.14 16 32 H 0.07 0.52 7.47 -51.93 -0.39 0.13 16 33 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.40 6.87 7.78 -40.82 -0.32 6.55 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 38 H 0.05 1.16 7.38 -51.92 -0.38 0.77 16 39 H 0.05 1.18 7.51 -51.93 -0.39 0.79 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.08 0.54 6.37 -51.93 -0.33 0.21 16 LS Contribution 376.97 15.07 5.68 5.68 Total: -1.00 -31.58 376.97 -10.85 -42.42 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -7.19 Total: 2.63 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -1.74 Total: -2.66 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -0.28 Total: -54.56 kcal Atomic # 8 Polarization: -10.99 SS G_CDS: 0.09 Total: -10.91 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -2.38 Total: 0.29 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.58 -10.85 -42.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016211217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.943 kcal (2) G-P(sol) polarization free energy of solvation -31.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds