Wall clock time and date at job start Tue Mar 31 2020 13:32:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50703 * 109.47466 * 180.02562 * 3 2 1 5 5 C 1.37474 * 122.44622 * 265.02613 * 4 3 2 6 6 C 1.36649 * 113.29030 * 179.97438 * 5 4 3 7 7 C 1.46585 * 125.45487 * 179.97438 * 6 5 4 8 8 O 1.21708 * 120.00041 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00118 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99959 * 179.97438 * 9 7 6 11 11 H 1.08996 * 110.88787 * 328.89094 * 10 9 7 12 12 C 1.55153 * 111.00153 * 205.00214 * 10 9 7 13 13 C 1.54322 * 102.94484 * 277.42967 * 12 10 9 14 14 N 1.47023 * 107.27109 * 337.81124 * 13 12 10 15 15 C 1.36937 * 125.64829 * 178.89215 * 14 13 12 16 16 H 1.08002 * 120.00163 * 180.02562 * 15 14 13 17 17 C 1.38813 * 120.00202 * 0.02562 * 15 14 13 18 18 N 1.31623 * 119.99906 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00121 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46901 * 90.00109 * 19 17 15 21 21 H 1.48498 * 109.46985 * 209.99741 * 19 17 15 22 22 H 1.48490 * 109.47080 * 330.00112 * 19 17 15 23 23 C 1.47426 * 108.70260 * 358.93906 * 14 13 12 24 24 S 1.75828 * 109.08841 * 359.97438 * 6 5 4 25 25 C 1.33814 * 122.44896 * 84.73826 * 4 3 2 26 26 C 1.50704 * 124.52054 * 0.02562 * 25 4 3 27 27 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 32 32 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 33 33 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 34 34 H 1.07993 * 123.35419 * 359.93873 * 5 4 3 35 35 H 0.96996 * 119.99489 * 0.02562 * 9 7 6 36 36 H 1.08991 * 110.72274 * 35.79709 * 12 10 9 37 37 H 1.09008 * 110.71637 * 159.07282 * 12 10 9 38 38 H 1.09008 * 109.88131 * 97.22438 * 13 12 10 39 39 H 1.08999 * 109.89029 * 218.23949 * 13 12 10 40 40 H 0.96998 * 120.00129 * 179.97438 * 18 17 15 41 41 H 1.08994 * 110.36277 * 265.28614 * 23 14 13 42 42 H 1.09002 * 110.36355 * 142.96943 * 23 14 13 43 43 H 1.08996 * 109.47144 * 89.99926 * 26 25 4 44 44 H 1.09003 * 109.46684 * 210.00008 * 26 25 4 45 45 H 1.09000 * 109.46869 * 329.99567 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2851 1.5429 1.1548 6 6 5.6341 1.5236 0.9377 7 6 6.6640 1.6143 1.9768 8 8 6.3415 1.7173 3.1459 9 7 7.9680 1.5838 1.6377 10 6 8.9973 1.6751 2.6763 11 1 8.6501 2.2775 3.5156 12 6 10.3224 2.2380 2.0979 13 6 10.9830 0.9920 1.4713 14 7 10.4024 -0.1875 2.1297 15 6 10.7071 -1.4917 1.8442 16 1 10.2232 -2.2905 2.3865 17 6 11.6380 -1.7870 0.8577 18 7 12.2274 -0.8136 0.1963 19 14 12.0531 -3.5661 0.4677 20 1 11.1407 -4.0665 -0.5917 21 1 13.4576 -3.6542 -0.0065 22 1 11.8910 -4.3918 1.6912 23 6 9.4371 0.2664 3.1473 24 16 5.9366 1.3724 -0.7877 25 6 4.2646 1.3391 -1.1254 26 6 3.6744 1.2127 -2.5063 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.8428 1.6291 2.1363 35 1 8.2250 1.5021 0.7060 36 1 10.1216 2.9918 1.3368 37 1 10.9468 2.6471 2.8923 38 1 10.7742 0.9599 0.4019 39 1 12.0598 1.0198 1.6380 40 1 12.8781 -1.0199 -0.4928 41 1 9.9159 0.3254 4.1246 42 1 8.5801 -0.4062 3.1838 43 1 3.5324 2.2055 -2.9331 44 1 4.3509 0.6384 -3.1393 45 1 2.7131 0.7025 -2.4452 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016211217.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:27 Heat of formation + Delta-G solvation = -17.387272 kcal Electronic energy + Delta-G solvation = -24752.697957 eV Core-core repulsion = 21281.895177 eV Total energy + Delta-G solvation = -3470.802780 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.07839 -39.79898 -38.75870 -35.46923 -35.10313 -33.75504 -32.85447 -31.07421 -29.64409 -28.91047 -26.95868 -26.24084 -24.56976 -22.90707 -22.05400 -21.67904 -21.37325 -19.73672 -19.09324 -18.79156 -17.49977 -17.18564 -16.65538 -16.20029 -15.96018 -15.69878 -15.62732 -15.23121 -15.06454 -14.66529 -14.32244 -14.08665 -13.89129 -13.86741 -13.62942 -13.60582 -13.00569 -12.91845 -12.83584 -12.80243 -12.69121 -12.36756 -12.32351 -12.11931 -12.02993 -11.97596 -11.84017 -11.66857 -11.62584 -11.44469 -11.17346 -10.73385 -10.22733 -9.62757 -9.37100 -8.87756 -7.85760 -5.20252 -0.51607 0.45729 0.91146 1.31585 1.45265 1.46224 1.55120 2.04859 2.17093 2.48487 3.32965 3.64238 3.65224 3.81526 3.84667 4.03826 4.05964 4.10785 4.27420 4.28211 4.30582 4.55060 4.63697 4.65045 4.69026 4.71788 4.75594 4.85320 4.89043 4.91344 4.97626 5.01016 5.03447 5.09462 5.18689 5.24213 5.42976 5.43895 5.47370 5.50818 5.55673 5.64828 5.74881 6.18681 6.41405 7.05225 7.10809 7.75589 8.40077 9.24218 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.014237 B = 0.003267 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.258924 B = 8568.086885 C = 9344.650442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C -0.053 4.053 4 C -0.130 4.130 5 C -0.045 4.045 6 C -0.298 4.298 7 C 0.589 3.411 8 O -0.573 6.573 9 N -0.699 5.699 10 C 0.139 3.861 11 H 0.107 0.893 12 C -0.135 4.135 13 C 0.184 3.816 14 N -0.620 5.620 15 C -0.242 4.242 16 H 0.072 0.928 17 C -0.059 4.059 18 N -0.945 5.945 19 Si 0.974 3.026 20 H -0.285 1.285 21 H -0.292 1.292 22 H -0.275 1.275 23 C 0.122 3.878 24 S 0.206 5.794 25 C -0.184 4.184 26 C -0.088 4.088 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.148 0.852 35 H 0.402 0.598 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.019 0.981 39 H 0.013 0.987 40 H 0.248 0.752 41 H 0.037 0.963 42 H 0.026 0.974 43 H 0.095 0.905 44 H 0.076 0.924 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.111 8.073 -5.951 23.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.092 4.092 4 C -0.142 4.142 5 C -0.079 4.079 6 C -0.418 4.418 7 C 0.377 3.623 8 O -0.456 6.456 9 N -0.348 5.348 10 C 0.034 3.966 11 H 0.125 0.875 12 C -0.173 4.173 13 C 0.059 3.941 14 N -0.347 5.347 15 C -0.371 4.371 16 H 0.090 0.910 17 C -0.252 4.252 18 N -0.594 5.594 19 Si 0.803 3.197 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.200 1.200 23 C -0.004 4.004 24 S 0.475 5.525 25 C -0.304 4.304 26 C -0.146 4.146 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.165 0.835 35 H 0.237 0.763 36 H 0.111 0.889 37 H 0.114 0.886 38 H 0.038 0.962 39 H 0.031 0.969 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.113 0.887 44 H 0.095 0.905 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -19.812 7.957 -6.157 22.220 hybrid contribution -0.272 -1.153 0.496 1.285 sum -20.084 6.803 -5.662 21.948 Atomic orbital electron populations 1.21760 0.94411 1.02031 1.02447 1.21505 0.96601 0.95822 1.01842 1.20366 0.87122 0.97770 1.03953 1.18812 0.98730 1.06188 0.90490 1.20765 0.90620 0.95998 1.00512 1.24389 0.97928 1.21525 0.97986 1.17270 0.82089 0.75531 0.87424 1.90754 1.82278 1.52690 1.19830 1.45723 1.04874 1.73195 1.11014 1.22056 0.87373 0.96288 0.90915 0.87474 1.23110 0.94592 0.97875 1.01724 1.20963 0.94828 0.83810 0.94522 1.44700 1.46822 1.02151 1.41052 1.19338 1.19002 0.83123 1.15675 0.90970 1.25535 0.99372 1.01400 0.98902 1.70144 1.31338 1.30942 1.26976 0.85143 0.76804 0.79813 0.77952 1.21200 1.21788 1.19979 1.22067 0.91699 0.94342 0.92334 1.83258 1.04520 1.67442 0.97231 1.24493 0.97480 1.06639 1.01833 1.20578 1.01767 1.04181 0.88088 0.92504 0.92588 0.91584 0.93342 0.91804 0.89111 0.90527 0.83482 0.76288 0.88943 0.88608 0.96248 0.96906 0.94268 0.94533 0.95581 0.88683 0.90526 0.88626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.91 71.98 0.71 -0.90 16 2 C -0.12 -1.70 5.85 30.59 0.18 -1.53 16 3 C -0.05 -0.76 4.82 29.85 0.14 -0.62 16 4 C -0.13 -2.69 5.04 -21.05 -0.11 -2.80 16 5 C -0.04 -1.18 9.78 21.72 0.21 -0.97 16 6 C -0.30 -9.02 6.45 24.08 0.16 -8.86 16 7 C 0.59 21.26 7.78 86.42 0.67 21.93 16 8 O -0.57 -23.68 16.48 -4.37 -0.07 -23.75 16 9 N -0.70 -24.82 5.18 -440.00 -2.28 -27.10 16 10 C 0.14 5.07 3.43 46.38 0.16 5.23 16 11 H 0.11 3.67 7.54 -2.39 -0.02 3.66 16 12 C -0.13 -4.69 6.55 31.78 0.21 -4.48 16 13 C 0.18 8.74 5.36 86.73 0.47 9.21 16 14 N -0.62 -32.06 3.39 -691.98 -2.35 -34.41 16 15 C -0.24 -13.80 10.28 84.03 0.86 -12.94 16 16 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 17 C -0.06 -3.33 5.49 84.86 0.47 -2.86 16 18 N -0.95 -55.66 10.31 21.65 0.22 -55.44 16 19 Si 0.97 45.98 29.55 68.60 2.03 48.01 16 20 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 21 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 22 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 23 C 0.12 5.36 6.93 86.85 0.60 5.96 16 24 S 0.21 5.07 22.10 -56.49 -1.25 3.82 16 25 C -0.18 -3.64 6.28 24.68 0.15 -3.49 16 26 C -0.09 -1.10 9.71 71.24 0.69 -0.41 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.89 7.21 -2.39 -0.02 0.88 16 32 H 0.09 0.99 7.47 -2.39 -0.02 0.97 16 33 H 0.08 1.07 8.10 -2.39 -0.02 1.05 16 34 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 35 H 0.40 13.91 7.78 -92.71 -0.72 13.19 16 36 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 37 H 0.10 2.97 8.14 -2.38 -0.02 2.95 16 38 H 0.02 1.01 7.38 -2.38 -0.02 0.99 16 39 H 0.01 0.68 7.51 -2.39 -0.02 0.67 16 40 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.03 1.21 8.14 -2.39 -0.02 1.20 16 43 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.10 0.93 6.37 -2.39 -0.02 0.91 16 Total: -1.00 -69.48 376.97 2.15 -67.34 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.26 Total: 19.05 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 5.58 Total: 2.48 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -4.41 Total: -116.94 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.07 Total: -23.75 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -1.25 Total: 3.82 kcal Total: -69.48 2.15 -67.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016211217.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.949 kcal (2) G-P(sol) polarization free energy of solvation -69.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds