Wall clock time and date at job start Tue Mar 31 2020 13:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46862 * 2 1 4 4 C 1.50707 * 109.46810 * 179.97438 * 3 2 1 5 5 C 1.37465 * 122.45072 * 265.02367 * 4 3 2 6 6 C 1.36654 * 113.29887 * 179.97438 * 5 4 3 7 7 C 1.46582 * 125.45940 * 180.02562 * 6 5 4 8 8 O 1.21701 * 119.99707 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99855 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99762 * 179.97438 * 9 7 6 11 11 H 1.08996 * 110.78262 * 36.78476 * 10 9 7 12 12 C 1.55159 * 110.71743 * 160.02139 * 10 9 7 13 13 C 1.55129 * 101.48377 * 82.69799 * 12 10 9 14 14 N 1.47421 * 104.72458 * 37.29063 * 13 12 10 15 15 C 1.36945 * 125.64870 * 155.81551 * 14 13 12 16 16 H 1.07999 * 120.00077 * 179.69717 * 15 14 13 17 17 C 1.38812 * 119.99637 * 359.69551 * 15 14 13 18 18 N 1.31617 * 120.00227 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99854 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47102 * 119.99824 * 19 17 15 22 22 H 1.48500 * 109.47389 * 240.00173 * 19 17 15 23 23 C 1.47018 * 108.70379 * 335.55582 * 14 13 12 24 24 S 1.75834 * 109.08016 * 0.26314 * 6 5 4 25 25 C 1.33814 * 122.44545 * 85.00583 * 4 3 2 26 26 C 1.50703 * 124.52545 * 0.05121 * 25 4 3 27 27 H 1.09009 * 109.47113 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47380 * 299.99620 * 1 2 3 29 29 H 1.09002 * 109.47738 * 59.99879 * 1 2 3 30 30 H 1.09000 * 109.47380 * 240.00380 * 2 1 3 31 31 H 1.09003 * 109.47340 * 119.99769 * 2 1 3 32 32 H 1.09002 * 109.47314 * 60.00103 * 3 2 1 33 33 H 1.08994 * 109.47075 * 299.99888 * 3 2 1 34 34 H 1.08003 * 123.35469 * 0.02562 * 5 4 3 35 35 H 0.96994 * 119.99689 * 359.97438 * 9 7 6 36 36 H 1.09004 * 111.00410 * 200.93528 * 12 10 9 37 37 H 1.08993 * 111.00686 * 324.74875 * 12 10 9 38 38 H 1.08996 * 110.49705 * 278.45279 * 13 12 10 39 39 H 1.08997 * 110.34301 * 156.05884 * 13 12 10 40 40 H 0.97005 * 120.00046 * 179.97438 * 18 17 15 41 41 H 1.09010 * 109.88204 * 120.70275 * 23 14 13 42 42 H 1.08994 * 109.88560 * 241.86474 * 23 14 13 43 43 H 1.09005 * 109.46674 * 90.00710 * 26 25 4 44 44 H 1.09003 * 109.46820 * 209.99876 * 26 25 4 45 45 H 1.08998 * 109.47260 * 330.00520 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.2841 1.5433 1.1566 6 6 5.6333 1.5239 0.9406 7 6 6.6623 1.6139 1.9807 8 8 6.3388 1.7162 3.1494 9 7 7.9666 1.5843 1.6425 10 6 8.9950 1.6748 2.6819 11 1 8.6852 1.1406 3.5800 12 6 10.3517 1.1316 2.1606 13 6 10.9076 2.3655 1.4024 14 7 10.4988 3.5226 2.2192 15 6 11.1162 4.7449 2.2371 16 1 10.7352 5.5331 2.8694 17 6 12.2319 4.9706 1.4425 18 7 12.6959 4.0101 0.6716 19 14 13.0737 6.6380 1.4664 20 1 12.3620 7.5383 2.4089 21 1 14.4825 6.4750 1.9068 22 1 13.0460 7.2261 0.1031 23 6 9.3148 3.1492 3.0066 24 16 5.9372 1.3804 -0.7853 25 6 4.2653 1.3441 -1.1240 26 6 3.6764 1.2242 -2.5060 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6765 1.9563 -0.8899 34 1 3.8410 1.6285 2.1378 35 1 8.2243 1.5031 0.7110 36 1 11.0038 0.8506 2.9876 37 1 10.2015 0.2923 1.4816 38 1 10.4696 2.4306 0.4064 39 1 11.9943 2.3121 1.3371 40 1 13.4754 4.1679 0.1160 41 1 9.5279 3.2568 4.0702 42 1 8.4711 3.7812 2.7298 43 1 3.5353 2.2192 -2.9283 44 1 4.3532 0.6526 -3.1411 45 1 2.7147 0.7143 -2.4482 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016211219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:31 Heat of formation + Delta-G solvation = 2.507359 kcal Electronic energy + Delta-G solvation = -24544.774175 eV Core-core repulsion = 21074.834091 eV Total energy + Delta-G solvation = -3469.940084 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.78316 -38.80126 -37.13873 -34.43617 -33.84417 -32.28079 -31.66577 -29.29147 -28.70804 -27.37765 -25.88429 -24.52119 -23.53873 -22.13439 -20.63344 -20.21705 -19.84761 -18.75093 -17.96602 -16.94001 -16.35024 -15.85642 -15.05795 -14.93227 -14.79224 -14.67393 -14.29055 -13.88676 -13.75505 -13.63092 -13.31968 -13.11204 -12.88952 -12.60944 -12.35133 -12.13857 -12.05720 -11.95160 -11.62152 -11.55450 -11.38145 -11.06686 -10.98229 -10.89893 -10.79672 -10.74527 -10.43078 -10.09740 -9.90862 -9.79029 -9.57413 -8.85082 -8.68724 -8.61250 -8.45921 -6.84130 -5.66508 -3.07491 0.46829 1.39311 1.81392 2.27263 3.32566 3.39648 3.42076 3.45697 3.48069 4.49136 4.54153 4.61905 4.72518 4.84408 4.91239 5.00016 5.20775 5.24316 5.31277 5.33904 5.38724 5.44386 5.49490 5.52288 5.54969 5.63378 5.71992 5.74447 5.80800 5.85282 5.88978 6.02727 6.21621 6.24461 6.33822 6.34707 6.47718 6.53019 6.73284 7.02894 7.41769 7.62187 7.72833 7.82487 8.33435 8.39307 9.21629 9.82143 10.46529 11.37774 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021220 B = 0.002716 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.207003 B =10306.739471 C =10726.170806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.058 4.058 4 C -0.120 4.120 5 C -0.052 4.052 6 C -0.258 4.258 7 C 0.589 3.411 8 O -0.536 6.536 9 N -0.705 5.705 10 C 0.132 3.868 11 H 0.090 0.910 12 C -0.154 4.154 13 C 0.150 3.850 14 N -0.603 5.603 15 C -0.218 4.218 16 H 0.078 0.922 17 C -0.013 4.013 18 N -0.924 5.924 19 Si 0.915 3.085 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.127 3.873 24 S 0.204 5.796 25 C -0.201 4.201 26 C -0.085 4.085 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.151 0.849 35 H 0.397 0.603 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.010 0.990 39 H 0.110 0.890 40 H 0.251 0.749 41 H 0.033 0.967 42 H 0.026 0.974 43 H 0.076 0.924 44 H 0.070 0.930 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.324 -10.388 -6.135 23.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.098 4.098 4 C -0.133 4.133 5 C -0.085 4.085 6 C -0.379 4.379 7 C 0.374 3.626 8 O -0.415 6.415 9 N -0.355 5.355 10 C 0.027 3.973 11 H 0.108 0.892 12 C -0.193 4.193 13 C 0.026 3.974 14 N -0.330 5.330 15 C -0.346 4.346 16 H 0.096 0.904 17 C -0.208 4.208 18 N -0.573 5.573 19 Si 0.745 3.255 20 H -0.205 1.205 21 H -0.217 1.217 22 H -0.218 1.218 23 C 0.000 4.000 24 S 0.473 5.527 25 C -0.321 4.321 26 C -0.143 4.143 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.168 0.832 35 H 0.232 0.768 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.028 0.972 39 H 0.128 0.872 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.044 0.956 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.996 -10.261 -6.279 22.484 hybrid contribution -0.754 1.003 0.333 1.299 sum -19.750 -9.258 -5.946 22.608 Atomic orbital electron populations 1.21788 0.95706 1.01661 1.01850 1.21517 0.95520 0.96255 1.02463 1.20321 0.89217 0.97309 1.02905 1.18602 0.97298 1.06073 0.91347 1.20567 0.90932 0.97245 0.99713 1.24605 0.98083 1.18092 0.97107 1.16921 0.81766 0.76629 0.87249 1.90803 1.81716 1.50517 1.18429 1.45882 1.05029 1.73623 1.10983 1.22035 0.87240 0.97715 0.90268 0.89188 1.23393 0.94726 0.99888 1.01268 1.22016 1.02704 0.82098 0.90622 1.44532 1.29542 1.10895 1.48021 1.19146 1.06959 0.88095 1.20435 0.90443 1.24773 0.98699 0.98234 0.99109 1.69779 1.26172 1.30880 1.30486 0.85986 0.79242 0.82987 0.77237 1.20542 1.21738 1.21797 1.21694 0.90677 0.92249 0.95369 1.83163 1.02969 1.67576 0.98955 1.24020 0.98573 1.09180 1.00294 1.20395 1.01055 1.02861 0.90021 0.92729 0.92619 0.92769 0.91927 0.91722 0.90857 0.90999 0.83180 0.76833 0.90342 0.91717 0.97195 0.87206 0.93813 0.94883 0.95595 0.90506 0.91148 0.90296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.15 0.37 -0.54 16 2 C -0.12 -0.86 5.85 -26.73 -0.16 -1.02 16 3 C -0.06 -0.47 4.82 -27.88 -0.13 -0.60 16 4 C -0.12 -1.28 5.04 -106.45 -0.54 -1.82 16 5 C -0.05 -0.67 9.78 -40.44 -0.40 -1.06 16 6 C -0.26 -3.74 6.45 -36.79 -0.24 -3.98 16 7 C 0.59 10.26 7.78 -12.90 -0.10 10.16 16 8 O -0.54 -10.84 16.57 5.19 0.09 -10.75 16 9 N -0.71 -12.08 5.11 -53.37 -0.27 -12.35 16 10 C 0.13 2.46 3.24 -66.10 -0.21 2.25 16 11 H 0.09 1.63 7.70 -51.93 -0.40 1.23 16 12 C -0.15 -2.82 6.65 -24.46 -0.16 -2.98 16 13 C 0.15 3.55 5.88 -2.41 -0.01 3.54 16 14 N -0.60 -15.59 3.39 -169.94 -0.58 -16.17 16 15 C -0.22 -6.15 10.27 -15.06 -0.15 -6.31 16 16 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 17 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 18 N -0.92 -26.66 10.08 55.49 0.56 -26.10 16 19 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 C 0.13 2.84 6.98 -3.07 -0.02 2.82 16 24 S 0.20 2.39 22.10 -107.50 -2.38 0.02 16 25 C -0.20 -2.06 6.28 -35.86 -0.23 -2.28 16 26 C -0.08 -0.62 9.71 36.01 0.35 -0.27 16 27 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.44 7.24 -51.93 -0.38 0.07 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 33 H 0.07 0.51 7.46 -51.93 -0.39 0.12 16 34 H 0.15 1.89 8.06 -52.48 -0.42 1.47 16 35 H 0.40 6.30 7.73 -40.82 -0.32 5.98 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.97 16 37 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.11 2.92 5.86 -51.93 -0.30 2.62 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.03 0.74 8.14 -51.92 -0.42 0.32 16 42 H 0.03 0.62 8.04 -51.93 -0.42 0.20 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.48 6.40 -51.93 -0.33 0.14 16 LS Contribution 376.42 15.07 5.67 5.67 Total: -1.00 -31.89 376.42 -10.81 -42.70 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -7.15 Total: 2.35 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.73 Total: -2.57 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.29 Total: -54.63 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -2.38 Total: 0.02 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.89 -10.81 -42.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016211219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.206 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds