Wall clock time and date at job start Tue Mar 31 2020 13:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.46862 * 2 1 4 4 C 1.50707 * 109.46810 * 179.97438 * 3 2 1 5 5 C 1.37465 * 122.45072 * 265.02367 * 4 3 2 6 6 C 1.36654 * 113.29887 * 179.97438 * 5 4 3 7 7 C 1.46582 * 125.45940 * 180.02562 * 6 5 4 8 8 O 1.21701 * 119.99707 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99855 * 180.02562 * 7 6 5 10 10 C 1.46497 * 119.99762 * 179.97438 * 9 7 6 11 11 H 1.08996 * 110.78262 * 36.78476 * 10 9 7 12 12 C 1.55159 * 110.71743 * 160.02139 * 10 9 7 13 13 C 1.55129 * 101.48377 * 82.69799 * 12 10 9 14 14 N 1.47421 * 104.72458 * 37.29063 * 13 12 10 15 15 C 1.36945 * 125.64870 * 155.81551 * 14 13 12 16 16 H 1.07999 * 120.00077 * 179.69717 * 15 14 13 17 17 C 1.38812 * 119.99637 * 359.69551 * 15 14 13 18 18 N 1.31617 * 120.00227 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99854 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47057 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47102 * 119.99824 * 19 17 15 22 22 H 1.48500 * 109.47389 * 240.00173 * 19 17 15 23 23 C 1.47018 * 108.70379 * 335.55582 * 14 13 12 24 24 S 1.75834 * 109.08016 * 0.26314 * 6 5 4 25 25 C 1.33814 * 122.44545 * 85.00583 * 4 3 2 26 26 C 1.50703 * 124.52545 * 0.05121 * 25 4 3 27 27 H 1.09009 * 109.47113 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47380 * 299.99620 * 1 2 3 29 29 H 1.09002 * 109.47738 * 59.99879 * 1 2 3 30 30 H 1.09000 * 109.47380 * 240.00380 * 2 1 3 31 31 H 1.09003 * 109.47340 * 119.99769 * 2 1 3 32 32 H 1.09002 * 109.47314 * 60.00103 * 3 2 1 33 33 H 1.08994 * 109.47075 * 299.99888 * 3 2 1 34 34 H 1.08003 * 123.35469 * 0.02562 * 5 4 3 35 35 H 0.96994 * 119.99689 * 359.97438 * 9 7 6 36 36 H 1.09004 * 111.00410 * 200.93528 * 12 10 9 37 37 H 1.08993 * 111.00686 * 324.74875 * 12 10 9 38 38 H 1.08996 * 110.49705 * 278.45279 * 13 12 10 39 39 H 1.08997 * 110.34301 * 156.05884 * 13 12 10 40 40 H 0.97005 * 120.00046 * 179.97438 * 18 17 15 41 41 H 1.09010 * 109.88204 * 120.70275 * 23 14 13 42 42 H 1.08994 * 109.88560 * 241.86474 * 23 14 13 43 43 H 1.09005 * 109.46674 * 90.00710 * 26 25 4 44 44 H 1.09003 * 109.46820 * 209.99876 * 26 25 4 45 45 H 1.08998 * 109.47260 * 330.00520 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 6 4.2841 1.5433 1.1566 6 6 5.6333 1.5239 0.9406 7 6 6.6623 1.6139 1.9807 8 8 6.3388 1.7162 3.1494 9 7 7.9666 1.5843 1.6425 10 6 8.9950 1.6748 2.6819 11 1 8.6852 1.1406 3.5800 12 6 10.3517 1.1316 2.1606 13 6 10.9076 2.3655 1.4024 14 7 10.4988 3.5226 2.2192 15 6 11.1162 4.7449 2.2371 16 1 10.7352 5.5331 2.8694 17 6 12.2319 4.9706 1.4425 18 7 12.6959 4.0101 0.6716 19 14 13.0737 6.6380 1.4664 20 1 12.3620 7.5383 2.4089 21 1 14.4825 6.4750 1.9068 22 1 13.0460 7.2261 0.1031 23 6 9.3148 3.1492 3.0066 24 16 5.9372 1.3804 -0.7853 25 6 4.2653 1.3441 -1.1240 26 6 3.6764 1.2242 -2.5060 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6765 1.9564 0.8900 33 1 1.6765 1.9563 -0.8899 34 1 3.8410 1.6285 2.1378 35 1 8.2243 1.5031 0.7110 36 1 11.0038 0.8506 2.9876 37 1 10.2015 0.2923 1.4816 38 1 10.4696 2.4306 0.4064 39 1 11.9943 2.3121 1.3371 40 1 13.4754 4.1679 0.1160 41 1 9.5279 3.2568 4.0702 42 1 8.4711 3.7812 2.7298 43 1 3.5353 2.2192 -2.9283 44 1 4.3532 0.6526 -3.1411 45 1 2.7147 0.7143 -2.4482 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016211219.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:30 Heat of formation + Delta-G solvation = -15.657796 kcal Electronic energy + Delta-G solvation = -24545.561875 eV Core-core repulsion = 21074.834091 eV Total energy + Delta-G solvation = -3470.727785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.12332 -39.81254 -38.76371 -35.56826 -35.10405 -33.75986 -32.86288 -31.06995 -29.63760 -28.90469 -26.98251 -26.26209 -24.56574 -22.88722 -22.12556 -21.70208 -21.40787 -19.73779 -19.10185 -18.85183 -17.51394 -17.21293 -16.70050 -16.25001 -15.94909 -15.70372 -15.62526 -15.16194 -15.07274 -14.61277 -14.36118 -14.31021 -13.89327 -13.86151 -13.63319 -13.43736 -13.06106 -12.96319 -12.84666 -12.81965 -12.70164 -12.41073 -12.33751 -12.15526 -12.00646 -11.97340 -11.87571 -11.67673 -11.49633 -11.44346 -11.19175 -10.78212 -10.26413 -9.63386 -9.37246 -8.91960 -7.79910 -5.24133 -0.53143 0.44298 0.89043 1.30425 1.45887 1.46290 1.56926 2.01720 2.13754 2.47688 3.29990 3.58821 3.70876 3.79772 3.82800 4.01927 4.05054 4.10403 4.25756 4.27724 4.31124 4.54801 4.61399 4.64317 4.67145 4.71682 4.75453 4.85124 4.88828 4.91814 4.98530 5.00321 5.03787 5.09933 5.18632 5.24273 5.41106 5.43295 5.47586 5.51104 5.55383 5.59054 5.77879 6.29461 6.38265 7.02903 7.09980 7.74413 8.37962 9.21754 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.021220 B = 0.002716 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.207003 B =10306.739471 C =10726.170806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.055 4.055 4 C -0.131 4.131 5 C -0.045 4.045 6 C -0.299 4.299 7 C 0.588 3.412 8 O -0.573 6.573 9 N -0.703 5.703 10 C 0.144 3.856 11 H 0.102 0.898 12 C -0.133 4.133 13 C 0.153 3.847 14 N -0.622 5.622 15 C -0.241 4.241 16 H 0.073 0.927 17 C -0.062 4.062 18 N -0.944 5.944 19 Si 0.980 3.020 20 H -0.273 1.273 21 H -0.288 1.288 22 H -0.290 1.290 23 C 0.126 3.874 24 S 0.213 5.787 25 C -0.184 4.184 26 C -0.088 4.088 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.145 0.855 35 H 0.404 0.596 36 H 0.088 0.912 37 H 0.098 0.902 38 H -0.005 1.005 39 H 0.080 0.920 40 H 0.249 0.751 41 H 0.031 0.969 42 H 0.007 0.993 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.859 -11.001 -7.609 25.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.094 4.094 4 C -0.143 4.143 5 C -0.080 4.080 6 C -0.419 4.419 7 C 0.377 3.623 8 O -0.455 6.455 9 N -0.353 5.353 10 C 0.039 3.961 11 H 0.119 0.881 12 C -0.172 4.172 13 C 0.028 3.972 14 N -0.348 5.348 15 C -0.370 4.370 16 H 0.091 0.909 17 C -0.254 4.254 18 N -0.593 5.593 19 Si 0.808 3.192 20 H -0.197 1.197 21 H -0.214 1.214 22 H -0.217 1.217 23 C -0.001 4.001 24 S 0.483 5.517 25 C -0.304 4.304 26 C -0.146 4.146 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.163 0.837 35 H 0.239 0.761 36 H 0.107 0.893 37 H 0.116 0.884 38 H 0.013 0.987 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.025 0.975 43 H 0.108 0.892 44 H 0.100 0.900 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -20.543 -10.891 -7.765 24.513 hybrid contribution -0.358 1.205 0.731 1.454 sum -20.901 -9.686 -7.034 24.086 Atomic orbital electron populations 1.21770 0.94626 1.02098 1.02294 1.21486 0.96406 0.95482 1.02087 1.20379 0.87238 0.98097 1.03725 1.18796 0.98695 1.06250 0.90534 1.20765 0.90728 0.95940 1.00523 1.24367 0.97801 1.21677 0.98086 1.17304 0.82102 0.75458 0.87480 1.90766 1.82252 1.52312 1.20120 1.45804 1.04875 1.73617 1.10972 1.21827 0.87886 0.95070 0.91285 0.88054 1.23242 0.93982 0.98451 1.01485 1.21845 1.00959 0.83768 0.90592 1.44791 1.30469 1.10942 1.48632 1.19419 1.07615 0.89252 1.20733 0.90948 1.25568 0.99259 1.01694 0.98924 1.70005 1.26252 1.32329 1.30748 0.84994 0.78007 0.79067 0.77131 1.19745 1.21429 1.21675 1.21770 0.88939 0.94538 0.94809 1.83082 1.04413 1.67428 0.96755 1.24496 0.97576 1.06540 1.01761 1.20585 1.01970 1.04054 0.88028 0.92334 0.92743 0.91779 0.91436 0.93012 0.90893 0.89362 0.83684 0.76078 0.89349 0.88382 0.98673 0.90178 0.94104 0.95056 0.97483 0.89240 0.90023 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.12 -1.44 5.85 30.59 0.18 -1.26 16 3 C -0.05 -0.77 4.82 29.85 0.14 -0.62 16 4 C -0.13 -2.58 5.04 -21.05 -0.11 -2.68 16 5 C -0.05 -1.16 9.78 21.72 0.21 -0.95 16 6 C -0.30 -8.67 6.45 24.08 0.16 -8.51 16 7 C 0.59 20.81 7.78 86.42 0.67 21.48 16 8 O -0.57 -23.75 16.57 -4.35 -0.07 -23.82 16 9 N -0.70 -24.06 5.11 -440.97 -2.25 -26.31 16 10 C 0.14 5.35 3.24 46.18 0.15 5.50 16 11 H 0.10 3.59 7.70 -2.39 -0.02 3.57 16 12 C -0.13 -4.73 6.65 32.06 0.21 -4.52 16 13 C 0.15 7.31 5.88 86.93 0.51 7.82 16 14 N -0.62 -32.83 3.39 -691.57 -2.35 -35.17 16 15 C -0.24 -13.90 10.27 84.03 0.86 -13.04 16 16 H 0.07 4.11 7.83 -2.91 -0.02 4.09 16 17 C -0.06 -3.51 5.49 84.86 0.47 -3.04 16 18 N -0.94 -55.30 10.08 21.65 0.22 -55.08 16 19 Si 0.98 46.08 29.55 68.60 2.03 48.10 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 21 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 C 0.13 5.76 6.98 86.73 0.61 6.36 16 24 S 0.21 4.77 22.10 -56.49 -1.25 3.52 16 25 C -0.18 -3.35 6.28 24.68 0.15 -3.19 16 26 C -0.09 -0.97 9.71 71.24 0.69 -0.27 16 27 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 28 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.76 7.24 -2.39 -0.02 0.75 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 1.03 8.10 -2.39 -0.02 1.01 16 33 H 0.09 0.96 7.46 -2.39 -0.02 0.94 16 34 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 35 H 0.40 12.70 7.73 -92.71 -0.72 11.99 16 36 H 0.09 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.10 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.08 4.35 5.86 -2.39 -0.01 4.34 16 40 H 0.25 14.08 8.31 -92.70 -0.77 13.31 16 41 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 42 H 0.01 0.35 8.04 -2.39 -0.02 0.33 16 43 H 0.09 0.84 8.14 -2.38 -0.02 0.83 16 44 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.10 0.77 6.40 -2.39 -0.02 0.75 16 Total: -1.00 -70.11 376.42 2.22 -67.89 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.27 Total: 18.52 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 5.63 Total: 2.35 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -4.38 Total: -116.56 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.07 Total: -23.82 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Atomic # 16 Polarization: 4.77 SS G_CDS: -1.25 Total: 3.52 kcal Total: -70.11 2.22 -67.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016211219.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.228 kcal (2) G-P(sol) polarization free energy of solvation -70.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds