Wall clock time and date at job start Tue Mar 31 2020 13:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47532 * 2 1 4 4 C 1.53004 * 109.47068 * 240.00513 * 2 1 3 5 5 C 1.50700 * 109.47247 * 120.00593 * 2 1 3 6 6 C 1.33817 * 124.52075 * 59.99792 * 5 2 1 7 7 C 1.37475 * 115.09764 * 180.02562 * 6 5 2 8 8 C 1.36648 * 113.29975 * 359.97438 * 7 6 5 9 9 C 1.46576 * 125.46018 * 179.97438 * 8 7 6 10 10 O 1.21708 * 119.99846 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00176 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00039 * 180.02562 * 11 9 8 13 13 H 1.09000 * 110.88865 * 31.12068 * 12 11 9 14 14 C 1.55159 * 111.00376 * 155.00269 * 12 11 9 15 15 C 1.54320 * 102.94349 * 82.61054 * 14 12 11 16 16 N 1.47018 * 107.27210 * 22.19183 * 15 14 12 17 17 C 1.36945 * 125.64695 * 181.02594 * 16 15 14 18 18 H 1.08000 * 119.99441 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00031 * 0.02562 * 17 16 15 20 20 N 1.31619 * 120.00283 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46722 * 90.00437 * 21 19 17 23 23 H 1.48497 * 109.47157 * 210.00127 * 21 19 17 24 24 H 1.48494 * 109.47346 * 330.00290 * 21 19 17 25 25 C 1.47421 * 108.70379 * 1.28563 * 16 15 14 26 26 S 1.70614 * 124.52067 * 240.26511 * 5 2 1 27 27 H 1.09002 * 109.47172 * 299.99892 * 1 2 3 28 28 H 1.09007 * 109.47160 * 59.99378 * 1 2 3 29 29 H 1.08999 * 109.47441 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47121 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47623 * 300.00493 * 3 2 1 32 32 H 1.09007 * 109.46754 * 60.00352 * 3 2 1 33 33 H 1.08999 * 109.47013 * 300.00291 * 4 2 1 34 34 H 1.09003 * 109.47106 * 59.99524 * 4 2 1 35 35 H 1.08994 * 109.47532 * 180.02562 * 4 2 1 36 36 H 1.08001 * 122.45014 * 359.97438 * 6 5 2 37 37 H 1.07999 * 123.34725 * 179.97438 * 7 6 5 38 38 H 0.96995 * 120.00280 * 0.02562 * 11 9 8 39 39 H 1.08996 * 110.71852 * 324.24555 * 14 12 11 40 40 H 1.08998 * 110.86977 * 201.04425 * 14 12 11 41 41 H 1.09010 * 109.88205 * 262.77471 * 15 14 12 42 42 H 1.09004 * 110.01290 * 141.68524 * 15 14 12 43 43 H 0.96998 * 120.00243 * 179.97438 * 20 19 17 44 44 H 1.08996 * 110.36244 * 94.48455 * 25 16 15 45 45 H 1.08997 * 110.36930 * 216.80538 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.7654 -1.9868 1.5312 7 6 2.3231 -2.4385 2.7037 8 6 3.0578 -1.4876 3.3543 9 6 3.7655 -1.6806 4.6232 10 8 3.7256 -2.7600 5.1842 11 7 4.4604 -0.6629 5.1689 12 6 5.1682 -0.8561 6.4370 13 1 5.5098 -1.8862 6.5385 14 6 6.3520 0.1381 6.5702 15 6 5.6682 1.4233 7.0821 16 7 4.4015 1.0226 7.7117 17 6 3.4863 1.8718 8.2744 18 1 2.5823 1.4770 8.7140 19 6 3.7206 3.2400 8.2798 20 7 4.8221 3.7213 7.7437 21 14 2.4718 4.3984 9.0467 22 1 2.7913 4.5891 10.4844 23 1 2.5200 5.7093 8.3508 24 1 1.1115 3.8176 8.9148 25 6 4.2827 -0.4452 7.6426 26 16 3.0120 0.0069 2.4289 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9564 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.6766 -1.7488 -1.2494 34 1 1.6765 -0.2073 -2.1393 35 1 3.1299 -0.7216 -1.2492 36 1 1.1556 -2.6158 0.8995 37 1 2.1934 -3.4448 3.0738 38 1 4.4919 0.1974 4.7221 39 1 6.8215 0.3106 5.6017 40 1 7.0835 -0.2237 7.2928 41 1 5.4708 2.0959 6.2473 42 1 6.3058 1.9188 7.8143 43 1 4.9856 4.6773 7.7471 44 1 4.6540 -0.8994 8.5612 45 1 3.2464 -0.7341 7.4675 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001016314689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:30 Heat of formation + Delta-G solvation = 6.724947 kcal Electronic energy + Delta-G solvation = -25031.154157 eV Core-core repulsion = 21561.396961 eV Total energy + Delta-G solvation = -3469.757196 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.64087 -38.78783 -37.24448 -35.87020 -33.73191 -31.86267 -29.52533 -28.89623 -27.71465 -27.55106 -27.19185 -25.08167 -24.29173 -21.71322 -20.61020 -20.10833 -19.84144 -18.87921 -17.64428 -16.84421 -16.07811 -15.77658 -15.23629 -14.85560 -14.62816 -14.49320 -14.26016 -14.02624 -13.78923 -13.46211 -13.03061 -13.02210 -12.71182 -12.50776 -12.17421 -12.09536 -11.97228 -11.92282 -11.81465 -11.52788 -11.25684 -11.23219 -10.95514 -10.90758 -10.72902 -10.65816 -10.35867 -10.13732 -9.96144 -9.73161 -9.67744 -8.83971 -8.65074 -8.57915 -8.46738 -6.82197 -5.72021 -3.04558 0.55266 1.47558 1.92231 2.41973 3.39677 3.40322 3.45446 3.46899 3.51055 4.24731 4.50272 4.54414 4.64609 4.96212 5.02072 5.27424 5.30842 5.31820 5.32598 5.44671 5.46085 5.46619 5.48585 5.56572 5.59566 5.66447 5.76828 5.81815 5.83489 5.90234 5.99704 6.04509 6.16069 6.20783 6.34635 6.36180 6.49188 6.50554 6.69468 7.01935 7.53056 7.55452 7.78846 7.83038 8.24575 8.45741 9.22025 9.81877 10.47647 11.39934 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012905 B = 0.003713 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.186444 B = 7539.437466 C = 8801.920518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.001 3.999 3 C -0.156 4.156 4 C -0.135 4.135 5 C -0.189 4.189 6 C -0.153 4.153 7 C -0.059 4.059 8 C -0.266 4.266 9 C 0.589 3.411 10 O -0.541 6.541 11 N -0.699 5.699 12 C 0.128 3.872 13 H 0.093 0.907 14 C -0.154 4.154 15 C 0.175 3.825 16 N -0.604 5.604 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.923 5.923 21 Si 0.910 3.090 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.125 3.875 26 S 0.220 5.780 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.139 0.861 37 H 0.149 0.851 38 H 0.400 0.600 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.251 0.749 44 H 0.030 0.970 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.499 -7.906 -18.511 20.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.001 4.001 3 C -0.214 4.214 4 C -0.194 4.194 5 C -0.309 4.309 6 C -0.184 4.184 7 C -0.092 4.092 8 C -0.387 4.387 9 C 0.374 3.626 10 O -0.421 6.421 11 N -0.348 5.348 12 C 0.023 3.977 13 H 0.110 0.890 14 C -0.193 4.193 15 C 0.050 3.950 16 N -0.331 5.331 17 C -0.353 4.353 18 H 0.094 0.906 19 C -0.204 4.204 20 N -0.571 5.571 21 Si 0.741 3.259 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.208 1.208 25 C -0.003 4.003 26 S 0.490 5.510 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.157 0.843 37 H 0.167 0.833 38 H 0.235 0.765 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.048 0.952 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.890 -6.967 -17.824 19.355 hybrid contribution -1.315 -0.329 0.064 1.358 sum -4.205 -7.297 -17.761 19.656 Atomic orbital electron populations 1.21897 0.92971 1.02366 1.02268 1.19140 0.95944 0.94520 0.90484 1.22034 1.01705 0.94695 1.02982 1.21884 1.01442 1.00291 0.95737 1.24312 1.05419 0.99035 1.02093 1.19817 1.04757 0.95296 0.98553 1.20668 0.94831 1.00152 0.93508 1.24751 1.11657 0.99548 1.02724 1.16934 0.78416 0.84338 0.82862 1.90788 1.62702 1.25712 1.62873 1.45715 1.51165 1.13807 1.24100 1.22211 0.92906 0.99422 0.83190 0.88952 1.23232 0.96617 0.98334 1.01127 1.21183 0.86530 0.90374 0.96900 1.44483 1.20543 0.99617 1.68440 1.19064 0.98720 0.87310 1.30183 0.90552 1.24760 0.97792 0.96644 1.01198 1.69948 1.25374 1.11990 1.49832 0.86137 0.80542 0.80487 0.78731 1.21638 1.21695 1.20751 1.21993 0.97584 0.86624 0.94052 1.83257 1.45190 1.11092 1.11488 0.92131 0.91983 0.92206 0.91859 0.91316 0.91691 0.92221 0.91992 0.92279 0.84303 0.83296 0.76543 0.91604 0.90760 0.93625 0.93645 0.93821 0.95242 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.06 8.33 37.16 0.31 -0.75 16 2 C 0.00 0.01 0.90 -155.66 -0.14 -0.13 16 3 C -0.16 -1.30 7.52 37.16 0.28 -1.02 16 4 C -0.14 -0.97 8.33 37.16 0.31 -0.66 16 5 C -0.19 -2.04 4.97 -35.86 -0.18 -2.22 16 6 C -0.15 -1.68 9.18 -41.41 -0.38 -2.06 16 7 C -0.06 -0.77 10.01 -40.43 -0.40 -1.18 16 8 C -0.27 -4.00 6.45 -36.80 -0.24 -4.24 16 9 C 0.59 10.51 7.78 -12.90 -0.10 10.41 16 10 O -0.54 -11.04 16.48 5.18 0.09 -10.96 16 11 N -0.70 -12.36 5.20 -52.94 -0.28 -12.64 16 12 C 0.13 2.37 3.43 -65.66 -0.23 2.14 16 13 H 0.09 1.64 7.54 -51.93 -0.39 1.25 16 14 C -0.15 -2.77 6.55 -24.90 -0.16 -2.94 16 15 C 0.17 4.09 5.37 -3.07 -0.02 4.07 16 16 N -0.60 -15.28 3.39 -169.94 -0.58 -15.86 16 17 C -0.22 -6.26 10.28 -15.06 -0.15 -6.42 16 18 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 19 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 20 N -0.92 -26.56 10.31 55.49 0.57 -25.99 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.12 2.71 6.95 -2.41 -0.02 2.69 16 26 S 0.22 2.76 20.43 -107.50 -2.20 0.56 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.44 7.86 -51.93 -0.41 0.03 16 30 H 0.06 0.53 7.91 -51.93 -0.41 0.12 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.59 7.90 -51.93 -0.41 0.18 16 33 H 0.06 0.41 7.86 -51.93 -0.41 0.00 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.14 1.21 7.90 -52.49 -0.41 0.80 16 37 H 0.15 1.89 8.06 -52.49 -0.42 1.46 16 38 H 0.40 6.85 7.78 -40.82 -0.32 6.53 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.16 7.38 -51.92 -0.38 0.77 16 42 H 0.05 1.18 7.50 -51.93 -0.39 0.79 16 43 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 44 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 375.30 15.07 5.66 5.66 Total: -1.00 -31.48 375.30 -10.28 -41.76 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.31 Total: 3.01 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: -1.21 Total: -2.61 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.28 Total: -54.49 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -2.20 Total: 0.56 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.48 -10.28 -41.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016314689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.486 kcal (2) G-P(sol) polarization free energy of solvation -31.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds