Wall clock time and date at job start Tue Mar 31 2020 13:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47532 * 2 1 4 4 C 1.53004 * 109.47068 * 240.00513 * 2 1 3 5 5 C 1.50700 * 109.47247 * 120.00593 * 2 1 3 6 6 C 1.33817 * 124.52075 * 59.99792 * 5 2 1 7 7 C 1.37475 * 115.09764 * 180.02562 * 6 5 2 8 8 C 1.36648 * 113.29975 * 359.97438 * 7 6 5 9 9 C 1.46576 * 125.46018 * 179.97438 * 8 7 6 10 10 O 1.21708 * 119.99846 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00176 * 179.97438 * 9 8 7 12 12 C 1.46506 * 120.00039 * 180.02562 * 11 9 8 13 13 H 1.09000 * 110.88865 * 31.12068 * 12 11 9 14 14 C 1.55159 * 111.00376 * 155.00269 * 12 11 9 15 15 C 1.54320 * 102.94349 * 82.61054 * 14 12 11 16 16 N 1.47018 * 107.27210 * 22.19183 * 15 14 12 17 17 C 1.36945 * 125.64695 * 181.02594 * 16 15 14 18 18 H 1.08000 * 119.99441 * 180.02562 * 17 16 15 19 19 C 1.38811 * 120.00031 * 0.02562 * 17 16 15 20 20 N 1.31619 * 120.00283 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48507 * 109.46722 * 90.00437 * 21 19 17 23 23 H 1.48497 * 109.47157 * 210.00127 * 21 19 17 24 24 H 1.48494 * 109.47346 * 330.00290 * 21 19 17 25 25 C 1.47421 * 108.70379 * 1.28563 * 16 15 14 26 26 S 1.70614 * 124.52067 * 240.26511 * 5 2 1 27 27 H 1.09002 * 109.47172 * 299.99892 * 1 2 3 28 28 H 1.09007 * 109.47160 * 59.99378 * 1 2 3 29 29 H 1.08999 * 109.47441 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47121 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47623 * 300.00493 * 3 2 1 32 32 H 1.09007 * 109.46754 * 60.00352 * 3 2 1 33 33 H 1.08999 * 109.47013 * 300.00291 * 4 2 1 34 34 H 1.09003 * 109.47106 * 59.99524 * 4 2 1 35 35 H 1.08994 * 109.47532 * 180.02562 * 4 2 1 36 36 H 1.08001 * 122.45014 * 359.97438 * 6 5 2 37 37 H 1.07999 * 123.34725 * 179.97438 * 7 6 5 38 38 H 0.96995 * 120.00280 * 0.02562 * 11 9 8 39 39 H 1.08996 * 110.71852 * 324.24555 * 14 12 11 40 40 H 1.08998 * 110.86977 * 201.04425 * 14 12 11 41 41 H 1.09010 * 109.88205 * 262.77471 * 15 14 12 42 42 H 1.09004 * 110.01290 * 141.68524 * 15 14 12 43 43 H 0.96998 * 120.00243 * 179.97438 * 20 19 17 44 44 H 1.08996 * 110.36244 * 94.48455 * 25 16 15 45 45 H 1.08997 * 110.36930 * 216.80538 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 6 1.7654 -1.9868 1.5312 7 6 2.3231 -2.4385 2.7037 8 6 3.0578 -1.4876 3.3543 9 6 3.7655 -1.6806 4.6232 10 8 3.7256 -2.7600 5.1842 11 7 4.4604 -0.6629 5.1689 12 6 5.1682 -0.8561 6.4370 13 1 5.5098 -1.8862 6.5385 14 6 6.3520 0.1381 6.5702 15 6 5.6682 1.4233 7.0821 16 7 4.4015 1.0226 7.7117 17 6 3.4863 1.8718 8.2744 18 1 2.5823 1.4770 8.7140 19 6 3.7206 3.2400 8.2798 20 7 4.8221 3.7213 7.7437 21 14 2.4718 4.3984 9.0467 22 1 2.7913 4.5891 10.4844 23 1 2.5200 5.7093 8.3508 24 1 1.1115 3.8176 8.9148 25 6 4.2827 -0.4452 7.6426 26 16 3.0120 0.0069 2.4289 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9564 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 1.6766 -1.7488 -1.2494 34 1 1.6765 -0.2073 -2.1393 35 1 3.1299 -0.7216 -1.2492 36 1 1.1556 -2.6158 0.8995 37 1 2.1934 -3.4448 3.0738 38 1 4.4919 0.1974 4.7221 39 1 6.8215 0.3106 5.6017 40 1 7.0835 -0.2237 7.2928 41 1 5.4708 2.0959 6.2473 42 1 6.3058 1.9188 7.8143 43 1 4.9856 4.6773 7.7471 44 1 4.6540 -0.8994 8.5612 45 1 3.2464 -0.7341 7.4675 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001016314689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:29 Heat of formation + Delta-G solvation = -11.303935 kcal Electronic energy + Delta-G solvation = -25031.935948 eV Core-core repulsion = 21561.396961 eV Total energy + Delta-G solvation = -3470.538987 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.03094 -39.72374 -38.83025 -36.77828 -35.45589 -33.70323 -31.19427 -30.20960 -28.84675 -28.32396 -28.11261 -26.61907 -25.79105 -23.00376 -21.96620 -21.51344 -21.30587 -20.07454 -18.88811 -18.59403 -17.41923 -16.91907 -16.65404 -16.30688 -16.16319 -15.64856 -15.36937 -15.26263 -14.99038 -14.89424 -14.17118 -14.03044 -13.85853 -13.71824 -13.59866 -13.54761 -12.96225 -12.88707 -12.85037 -12.80191 -12.57724 -12.39518 -12.32079 -12.08872 -12.04094 -11.94418 -11.90929 -11.83696 -11.62732 -11.48245 -11.15966 -10.73082 -10.22631 -9.64912 -9.53173 -8.87441 -7.85479 -5.19986 -0.49059 0.47218 0.94865 1.39858 1.45436 1.46468 1.55183 2.07805 2.20175 2.48741 3.33370 3.50053 3.64705 3.68594 3.87583 3.91814 4.01327 4.03737 4.24843 4.28432 4.40742 4.53344 4.64635 4.69320 4.71157 4.76434 4.85806 4.87477 4.91908 4.94236 4.99576 5.00598 5.01655 5.08377 5.17172 5.32086 5.35703 5.42017 5.43262 5.44428 5.48433 5.65149 5.75071 6.19040 6.42698 7.06676 7.11115 7.75947 8.40423 9.24478 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.012905 B = 0.003713 C = 0.003180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.186444 B = 7539.437466 C = 8801.920518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.000 4.000 3 C -0.159 4.159 4 C -0.133 4.133 5 C -0.171 4.171 6 C -0.157 4.157 7 C -0.048 4.048 8 C -0.307 4.307 9 C 0.588 3.412 10 O -0.574 6.574 11 N -0.699 5.699 12 C 0.139 3.861 13 H 0.107 0.893 14 C -0.134 4.134 15 C 0.183 3.817 16 N -0.621 5.621 17 C -0.244 4.244 18 H 0.072 0.928 19 C -0.057 4.057 20 N -0.945 5.945 21 Si 0.974 3.026 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.274 1.274 25 C 0.122 3.878 26 S 0.214 5.786 27 H 0.046 0.954 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.168 0.832 37 H 0.151 0.849 38 H 0.402 0.598 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.019 0.981 42 H 0.013 0.987 43 H 0.248 0.752 44 H 0.037 0.963 45 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.325 -8.357 -20.619 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.002 4.002 3 C -0.217 4.217 4 C -0.191 4.191 5 C -0.291 4.291 6 C -0.187 4.187 7 C -0.082 4.082 8 C -0.427 4.427 9 C 0.377 3.623 10 O -0.456 6.456 11 N -0.348 5.348 12 C 0.033 3.967 13 H 0.125 0.875 14 C -0.173 4.173 15 C 0.059 3.941 16 N -0.348 5.348 17 C -0.373 4.373 18 H 0.090 0.910 19 C -0.250 4.250 20 N -0.594 5.594 21 Si 0.802 3.198 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.200 1.200 25 C -0.004 4.004 26 S 0.485 5.515 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.185 0.815 37 H 0.169 0.831 38 H 0.237 0.763 39 H 0.110 0.890 40 H 0.114 0.886 41 H 0.038 0.962 42 H 0.031 0.969 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -3.712 -7.432 -19.939 21.600 hybrid contribution -1.125 -0.194 0.652 1.315 sum -4.837 -7.625 -19.286 21.296 Atomic orbital electron populations 1.21911 0.92021 1.02951 1.02559 1.19304 0.96590 0.94455 0.89897 1.22073 1.01559 0.94741 1.03329 1.21886 1.01139 1.00702 0.95404 1.24748 1.03485 0.98949 1.01903 1.20013 1.04941 0.95645 0.98090 1.20912 0.93623 0.99922 0.93780 1.24563 1.13889 1.01470 1.02782 1.17294 0.77862 0.83671 0.83503 1.90752 1.63968 1.26779 1.64129 1.45715 1.51310 1.14038 1.23758 1.22076 0.92168 1.00102 0.82315 0.87507 1.23100 0.96350 0.95050 1.02799 1.20969 0.85734 0.92496 0.94940 1.44704 1.20810 1.00932 1.68308 1.19348 0.99285 0.88221 1.30436 0.90971 1.25514 0.99631 0.97946 1.01932 1.70142 1.26714 1.11852 1.50647 0.85156 0.78657 0.78273 0.77690 1.21395 1.21615 1.19967 1.22105 0.97461 0.84887 0.95974 1.83278 1.45972 1.10309 1.11964 0.93449 0.90157 0.91500 0.92176 0.89417 0.92935 0.91548 0.90238 0.92806 0.81480 0.83124 0.76318 0.88991 0.88621 0.96229 0.96917 0.94270 0.94521 0.95587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.33 71.98 0.60 -1.13 16 2 C 0.00 -0.01 0.90 -52.93 -0.05 -0.05 16 3 C -0.16 -2.34 7.52 71.98 0.54 -1.80 16 4 C -0.13 -1.48 8.33 71.98 0.60 -0.88 16 5 C -0.17 -3.39 4.97 24.68 0.12 -3.26 16 6 C -0.16 -3.11 9.18 21.08 0.19 -2.92 16 7 C -0.05 -1.23 10.01 21.72 0.22 -1.01 16 8 C -0.31 -9.19 6.45 24.07 0.16 -9.04 16 9 C 0.59 21.19 7.78 86.42 0.67 21.87 16 10 O -0.57 -23.64 16.48 -4.38 -0.07 -23.72 16 11 N -0.70 -24.83 5.20 -439.63 -2.28 -27.11 16 12 C 0.14 5.07 3.43 46.46 0.16 5.23 16 13 H 0.11 3.67 7.54 -2.39 -0.02 3.65 16 14 C -0.13 -4.69 6.55 31.78 0.21 -4.48 16 15 C 0.18 8.74 5.37 86.73 0.47 9.20 16 16 N -0.62 -32.08 3.39 -691.56 -2.35 -34.43 16 17 C -0.24 -13.90 10.28 84.03 0.86 -13.03 16 18 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 19 C -0.06 -3.21 5.49 84.86 0.47 -2.75 16 20 N -0.94 -55.54 10.31 21.65 0.22 -55.32 16 21 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 24 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 25 C 0.12 5.37 6.95 86.93 0.60 5.97 16 26 S 0.21 5.30 20.43 -56.49 -1.15 4.14 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.07 0.76 7.86 -2.39 -0.02 0.74 16 30 H 0.06 0.92 7.91 -2.39 -0.02 0.90 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.05 0.90 7.90 -2.38 -0.02 0.88 16 33 H 0.07 0.67 7.86 -2.39 -0.02 0.65 16 34 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.17 2.35 7.90 -2.91 -0.02 2.33 16 37 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 38 H 0.40 13.92 7.78 -92.71 -0.72 13.20 16 39 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.10 2.97 8.14 -2.39 -0.02 2.95 16 41 H 0.02 1.02 7.38 -2.38 -0.02 1.00 16 42 H 0.01 0.68 7.50 -2.38 -0.02 0.66 16 43 H 0.25 14.18 8.31 -92.71 -0.77 13.40 16 44 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -69.13 375.30 2.47 -66.66 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.26 Total: 19.93 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: 5.82 Total: 1.91 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -4.41 Total: -116.86 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: -0.07 Total: -23.72 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: 5.30 SS G_CDS: -1.15 Total: 4.14 kcal Total: -69.13 2.47 -66.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001016314689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.354 kcal (2) G-P(sol) polarization free energy of solvation -69.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds