Wall clock time and date at job start Tue Mar 31 2020 13:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46940 * 2 1 4 4 C 1.52995 * 109.47105 * 119.99649 * 2 1 3 5 5 C 1.50704 * 109.47314 * 175.00069 * 4 2 1 6 6 C 1.33815 * 124.51986 * 90.00262 * 5 4 2 7 7 C 1.37477 * 115.09966 * 180.02562 * 6 5 4 8 8 C 1.36644 * 113.29626 * 0.02562 * 7 6 5 9 9 C 1.46581 * 125.45876 * 179.97438 * 8 7 6 10 10 O 1.21704 * 120.00257 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00114 * 179.97438 * 9 8 7 12 12 C 1.47018 * 125.64959 * 359.97276 * 11 9 8 13 13 C 1.54319 * 107.27132 * 178.98567 * 12 11 9 14 14 C 1.55150 * 102.94588 * 337.80878 * 13 12 11 15 15 H 1.09006 * 111.00300 * 277.39064 * 14 13 12 16 16 N 1.46496 * 111.00982 * 153.57493 * 14 13 12 17 17 C 1.36934 * 120.00548 * 154.99761 * 16 14 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.47428 * 125.64687 * 180.02562 * 11 9 8 26 26 S 1.70619 * 124.52249 * 270.27467 * 5 4 2 27 27 H 1.09003 * 109.47083 * 300.00060 * 1 2 3 28 28 H 1.08998 * 109.46653 * 59.99669 * 1 2 3 29 29 H 1.08994 * 109.46442 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47495 * 239.99895 * 2 1 3 31 31 H 1.08999 * 109.47384 * 180.02562 * 3 2 1 32 32 H 1.08993 * 109.47443 * 300.00027 * 3 2 1 33 33 H 1.09003 * 109.47282 * 60.00062 * 3 2 1 34 34 H 1.09004 * 109.47402 * 55.00241 * 4 2 1 35 35 H 1.09001 * 109.47930 * 295.00401 * 4 2 1 36 36 H 1.08000 * 122.45066 * 359.97438 * 6 5 4 37 37 H 1.08001 * 123.35382 * 179.97438 * 7 6 5 38 38 H 1.09009 * 109.88120 * 59.56805 * 12 11 9 39 39 H 1.08998 * 110.01074 * 298.48183 * 12 11 9 40 40 H 1.09007 * 110.72211 * 219.44221 * 13 12 11 41 41 H 1.09001 * 110.71870 * 96.17609 * 13 12 11 42 42 H 0.96999 * 119.99694 * 335.00285 * 16 14 13 43 43 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 44 44 H 1.08993 * 110.36761 * 85.24552 * 25 11 9 45 45 H 1.08999 * 110.36204 * 322.91701 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5420 -0.8293 1.1889 6 6 4.3883 0.0835 1.6800 7 6 5.7215 -0.2110 1.5189 8 6 5.9391 -1.3978 0.8775 9 6 7.2532 -1.9680 0.5668 10 8 8.2657 -1.3727 0.8857 11 7 7.3403 -3.1516 -0.0720 12 6 6.2035 -3.9734 -0.5121 13 6 6.7835 -5.2187 -1.2152 14 6 8.2036 -4.7529 -1.6318 15 1 8.1722 -4.1908 -2.5653 16 7 9.1196 -5.8911 -1.7381 17 6 10.2198 -5.8113 -2.5496 18 1 10.4123 -4.9089 -3.1109 19 6 11.0874 -6.8900 -2.6506 20 7 12.1452 -6.8131 -3.4303 21 14 10.7548 -8.4505 -1.6791 22 1 11.4183 -8.3593 -0.3537 23 1 9.2909 -8.6130 -1.4896 24 1 11.2907 -9.6195 -2.4216 25 6 8.5914 -3.8371 -0.4441 26 16 4.3902 -2.1287 0.4796 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8935 -0.5138 -0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6055 -1.7198 1.2952 35 1 1.7517 -0.1583 2.1370 36 1 4.0489 0.9859 2.1666 37 1 6.5176 0.4321 1.8640 38 1 5.5854 -3.4080 -1.2097 39 1 5.6077 -4.2774 0.3485 40 1 6.1900 -5.4780 -2.0920 41 1 6.8407 -6.0600 -0.5245 42 1 8.9469 -6.7014 -1.2337 43 1 12.7517 -7.5668 -3.5006 44 1 8.9597 -4.4337 0.3903 45 1 9.3435 -3.1117 -0.7542 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018977960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:27 Heat of formation + Delta-G solvation = -0.423105 kcal Electronic energy + Delta-G solvation = -24438.224121 eV Core-core repulsion = 20968.156962 eV Total energy + Delta-G solvation = -3470.067159 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.90313 -38.67393 -37.36260 -36.06007 -34.33950 -31.82448 -30.89826 -30.00869 -28.41423 -27.58516 -26.79926 -24.37154 -23.37043 -22.52887 -21.10472 -20.58939 -20.12566 -18.60716 -18.11837 -17.48402 -16.30148 -16.00619 -15.85782 -15.21266 -14.84927 -14.74012 -14.51586 -14.05995 -13.88653 -13.48018 -13.22816 -13.05847 -12.87679 -12.76041 -12.65286 -12.59220 -12.40303 -12.32845 -12.05589 -11.89744 -11.39298 -11.32606 -11.24153 -11.14654 -11.06408 -10.85423 -10.69865 -10.48853 -10.13784 -9.92670 -9.66601 -9.08683 -8.87710 -8.72702 -8.39754 -7.42022 -5.84872 -3.23623 0.39784 1.33190 1.77063 2.26797 3.04712 3.26503 3.31784 3.35121 3.41123 4.28689 4.43971 4.51378 4.51881 4.53988 4.70403 4.82395 4.99086 5.07691 5.13671 5.15867 5.21782 5.26798 5.30693 5.34384 5.41488 5.49500 5.53706 5.54896 5.57984 5.74131 5.76104 5.80286 5.84483 5.90019 5.94269 6.01538 6.06890 6.18753 6.22743 6.38602 6.48878 6.69875 7.60513 7.88884 8.22044 8.33312 9.09382 9.81105 9.98517 11.32649 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025553 B = 0.002589 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.498689 B =10813.598946 C =11341.237796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.046 4.046 5 C -0.210 4.210 6 C -0.151 4.151 7 C -0.058 4.058 8 C -0.259 4.259 9 C 0.598 3.402 10 O -0.533 6.533 11 N -0.610 5.610 12 C 0.091 3.909 13 C -0.139 4.139 14 C 0.178 3.822 15 H 0.078 0.922 16 N -0.734 5.734 17 C -0.254 4.254 18 H 0.093 0.907 19 C 0.010 3.990 20 N -0.928 5.928 21 Si 0.885 3.115 22 H -0.283 1.283 23 H -0.276 1.276 24 H -0.290 1.290 25 C 0.083 3.917 26 S 0.215 5.785 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.139 0.861 37 H 0.151 0.849 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.365 0.635 43 H 0.261 0.739 44 H 0.068 0.932 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.020 12.350 9.450 30.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.085 4.085 5 C -0.329 4.329 6 C -0.182 4.182 7 C -0.091 4.091 8 C -0.379 4.379 9 C 0.386 3.614 10 O -0.412 6.412 11 N -0.343 5.343 12 C -0.033 4.033 13 C -0.178 4.178 14 C 0.066 3.934 15 H 0.096 0.904 16 N -0.375 5.375 17 C -0.384 4.384 18 H 0.111 0.889 19 C -0.187 4.187 20 N -0.574 5.574 21 Si 0.714 3.286 22 H -0.209 1.209 23 H -0.202 1.202 24 H -0.216 1.216 25 C -0.041 4.041 26 S 0.484 5.516 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.156 0.844 37 H 0.168 0.832 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.096 0.904 42 H 0.198 0.802 43 H 0.071 0.929 44 H 0.087 0.913 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -25.714 11.436 8.735 29.467 hybrid contribution 0.270 0.264 1.515 1.561 sum -25.445 11.699 10.250 29.822 Atomic orbital electron populations 1.21847 0.94744 1.01879 1.02016 1.21134 0.95664 0.96825 0.97563 1.21910 1.01879 0.95412 1.01619 1.20279 0.87535 1.01501 0.99199 1.24543 1.01044 1.01389 1.05898 1.19896 0.91843 1.01340 1.05110 1.20713 0.97115 0.94831 0.96436 1.24599 0.96713 1.02768 1.13808 1.16611 0.87069 0.79800 0.77930 1.90835 1.36164 1.60342 1.53902 1.48358 1.09556 1.19509 1.56926 1.22113 0.89218 0.93048 0.98958 1.22954 0.98429 0.95837 1.00600 1.21284 0.87520 0.89108 0.95520 0.90381 1.42636 1.27864 1.12722 1.54297 1.19082 0.98749 1.01474 1.19093 0.88925 1.24693 0.96854 0.97928 0.99220 1.69703 1.14745 1.31657 1.41342 0.86559 0.77618 0.84268 0.80107 1.20934 1.20218 1.21594 1.23388 0.85333 0.96070 0.99334 1.83377 0.94514 1.20040 1.53669 0.92580 0.92391 0.92564 0.90901 0.91977 0.92723 0.92731 0.90690 0.90035 0.84352 0.83180 0.90994 0.91189 0.89588 0.90431 0.80196 0.92867 0.91327 0.90254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.19 37.16 0.34 -0.40 16 2 C -0.09 -0.57 2.91 -90.62 -0.26 -0.83 16 3 C -0.15 -0.96 8.87 37.16 0.33 -0.63 16 4 C -0.05 -0.30 5.12 -27.88 -0.14 -0.44 16 5 C -0.21 -1.83 5.05 -35.86 -0.18 -2.01 16 6 C -0.15 -1.42 8.50 -41.41 -0.35 -1.77 16 7 C -0.06 -0.68 10.01 -40.44 -0.40 -1.09 16 8 C -0.26 -3.43 6.38 -36.80 -0.23 -3.67 16 9 C 0.60 10.05 7.82 -12.89 -0.10 9.95 16 10 O -0.53 -10.88 17.10 5.19 0.09 -10.79 16 11 N -0.61 -9.66 3.33 -172.10 -0.57 -10.24 16 12 C 0.09 1.13 5.17 -3.07 -0.02 1.11 16 13 C -0.14 -1.88 6.60 -24.90 -0.16 -2.05 16 14 C 0.18 3.21 3.71 -65.79 -0.24 2.97 16 15 H 0.08 1.46 8.09 -51.93 -0.42 1.04 16 16 N -0.73 -16.42 5.05 -51.36 -0.26 -16.67 16 17 C -0.25 -6.93 10.44 -15.06 -0.16 -7.09 16 18 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 19 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 20 N -0.93 -28.61 13.97 55.49 0.78 -27.83 16 21 Si 0.88 21.39 27.74 -169.99 -4.71 16.67 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 C 0.08 1.52 6.60 -2.53 -0.02 1.51 16 26 S 0.21 2.10 18.38 -107.50 -1.98 0.12 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.47 6.38 -51.93 -0.33 0.14 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.15 1.75 8.06 -52.49 -0.42 1.32 16 38 H 0.07 0.78 6.82 -51.92 -0.35 0.43 16 39 H 0.07 0.75 6.99 -51.93 -0.36 0.39 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.02 8.00 -51.93 -0.42 0.61 16 42 H 0.36 7.92 5.62 -40.82 -0.23 7.69 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.33 16 44 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.08 1.60 8.04 -51.93 -0.42 1.19 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -32.46 372.02 -9.95 -42.41 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.20 Total: 4.98 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: -1.70 Total: -4.25 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: -0.06 Total: -54.74 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.71 Total: 16.67 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -1.98 Total: 0.12 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.46 -9.95 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018977960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.983 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds