Wall clock time and date at job start Tue Mar 31 2020 13:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46940 * 2 1 4 4 C 1.52995 * 109.47105 * 119.99649 * 2 1 3 5 5 C 1.50704 * 109.47314 * 175.00069 * 4 2 1 6 6 C 1.33815 * 124.51986 * 90.00262 * 5 4 2 7 7 C 1.37477 * 115.09966 * 180.02562 * 6 5 4 8 8 C 1.36644 * 113.29626 * 0.02562 * 7 6 5 9 9 C 1.46581 * 125.45876 * 179.97438 * 8 7 6 10 10 O 1.21704 * 120.00257 * 359.97438 * 9 8 7 11 11 N 1.34782 * 120.00114 * 179.97438 * 9 8 7 12 12 C 1.47018 * 125.64959 * 359.97276 * 11 9 8 13 13 C 1.54319 * 107.27132 * 178.98567 * 12 11 9 14 14 C 1.55150 * 102.94588 * 337.80878 * 13 12 11 15 15 H 1.09006 * 111.00300 * 277.39064 * 14 13 12 16 16 N 1.46496 * 111.00982 * 153.57493 * 14 13 12 17 17 C 1.36934 * 120.00548 * 154.99761 * 16 14 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.47428 * 125.64687 * 180.02562 * 11 9 8 26 26 S 1.70619 * 124.52249 * 270.27467 * 5 4 2 27 27 H 1.09003 * 109.47083 * 300.00060 * 1 2 3 28 28 H 1.08998 * 109.46653 * 59.99669 * 1 2 3 29 29 H 1.08994 * 109.46442 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47495 * 239.99895 * 2 1 3 31 31 H 1.08999 * 109.47384 * 180.02562 * 3 2 1 32 32 H 1.08993 * 109.47443 * 300.00027 * 3 2 1 33 33 H 1.09003 * 109.47282 * 60.00062 * 3 2 1 34 34 H 1.09004 * 109.47402 * 55.00241 * 4 2 1 35 35 H 1.09001 * 109.47930 * 295.00401 * 4 2 1 36 36 H 1.08000 * 122.45066 * 359.97438 * 6 5 4 37 37 H 1.08001 * 123.35382 * 179.97438 * 7 6 5 38 38 H 1.09009 * 109.88120 * 59.56805 * 12 11 9 39 39 H 1.08998 * 110.01074 * 298.48183 * 12 11 9 40 40 H 1.09007 * 110.72211 * 219.44221 * 13 12 11 41 41 H 1.09001 * 110.71870 * 96.17609 * 13 12 11 42 42 H 0.96999 * 119.99694 * 335.00285 * 16 14 13 43 43 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 44 44 H 1.08993 * 110.36761 * 85.24552 * 25 11 9 45 45 H 1.08999 * 110.36204 * 322.91701 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 6 3.5420 -0.8293 1.1889 6 6 4.3883 0.0835 1.6800 7 6 5.7215 -0.2110 1.5189 8 6 5.9391 -1.3978 0.8775 9 6 7.2532 -1.9680 0.5668 10 8 8.2657 -1.3727 0.8857 11 7 7.3403 -3.1516 -0.0720 12 6 6.2035 -3.9734 -0.5121 13 6 6.7835 -5.2187 -1.2152 14 6 8.2036 -4.7529 -1.6318 15 1 8.1722 -4.1908 -2.5653 16 7 9.1196 -5.8911 -1.7381 17 6 10.2198 -5.8113 -2.5496 18 1 10.4123 -4.9089 -3.1109 19 6 11.0874 -6.8900 -2.6506 20 7 12.1452 -6.8131 -3.4303 21 14 10.7548 -8.4505 -1.6791 22 1 11.4183 -8.3593 -0.3537 23 1 9.2909 -8.6130 -1.4896 24 1 11.2907 -9.6195 -2.4216 25 6 8.5914 -3.8371 -0.4441 26 16 4.3902 -2.1287 0.4796 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8935 -0.5138 -0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9564 0.8900 34 1 1.6055 -1.7198 1.2952 35 1 1.7517 -0.1583 2.1370 36 1 4.0489 0.9859 2.1666 37 1 6.5176 0.4321 1.8640 38 1 5.5854 -3.4080 -1.2097 39 1 5.6077 -4.2774 0.3485 40 1 6.1900 -5.4780 -2.0920 41 1 6.8407 -6.0600 -0.5245 42 1 8.9469 -6.7014 -1.2337 43 1 12.7517 -7.5668 -3.5006 44 1 8.9597 -4.4337 0.3903 45 1 9.3435 -3.1117 -0.7542 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018977960.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:26 Heat of formation + Delta-G solvation = -20.274848 kcal Electronic energy + Delta-G solvation = -24439.084957 eV Core-core repulsion = 20968.156962 eV Total energy + Delta-G solvation = -3470.927995 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17851 -39.51611 -38.61157 -36.72833 -36.11044 -33.66897 -31.90306 -31.33106 -29.69358 -28.11235 -27.70225 -25.73988 -24.56170 -23.83319 -22.26355 -21.58238 -21.04201 -19.96582 -19.38316 -18.92634 -17.62336 -16.97020 -16.92626 -16.42961 -15.83815 -15.68285 -15.63638 -15.33600 -15.11803 -14.79365 -14.47302 -14.14006 -14.08105 -13.93981 -13.65949 -13.50760 -13.43898 -13.10401 -13.02094 -12.96066 -12.69926 -12.51441 -12.37977 -12.20474 -11.94869 -11.86824 -11.71265 -11.67192 -11.59753 -11.39421 -11.26306 -11.04865 -9.99945 -9.56227 -9.45718 -9.36027 -8.04241 -5.41322 -0.50428 0.48600 0.96012 1.36827 1.38781 1.43864 1.50593 1.80547 2.11668 2.48011 3.23430 3.41452 3.45135 3.70694 3.75147 3.97674 3.99175 4.07081 4.09754 4.24142 4.25030 4.39516 4.40799 4.51831 4.54067 4.72553 4.76240 4.76702 4.85921 4.88144 4.96189 4.99968 5.06525 5.10508 5.13324 5.15830 5.21701 5.27752 5.33111 5.42724 5.49150 5.51091 5.74013 6.18783 6.36410 6.93816 7.03994 7.75791 7.96762 9.16730 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.025553 B = 0.002589 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.498689 B =10813.598946 C =11341.237796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C -0.152 4.152 4 C -0.047 4.047 5 C -0.192 4.192 6 C -0.159 4.159 7 C -0.055 4.055 8 C -0.303 4.303 9 C 0.592 3.408 10 O -0.587 6.587 11 N -0.611 5.611 12 C 0.091 3.909 13 C -0.124 4.124 14 C 0.170 3.830 15 H 0.066 0.934 16 N -0.735 5.735 17 C -0.240 4.240 18 H 0.054 0.946 19 C -0.062 4.062 20 N -0.982 5.982 21 Si 0.958 3.042 22 H -0.283 1.283 23 H -0.239 1.239 24 H -0.296 1.296 25 C 0.091 3.909 26 S 0.260 5.740 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.047 0.953 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.160 0.840 37 H 0.141 0.859 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.090 0.910 42 H 0.372 0.628 43 H 0.259 0.741 44 H 0.061 0.939 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.808 11.450 10.934 34.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.110 4.110 3 C -0.209 4.209 4 C -0.086 4.086 5 C -0.312 4.312 6 C -0.188 4.188 7 C -0.089 4.089 8 C -0.423 4.423 9 C 0.382 3.618 10 O -0.470 6.470 11 N -0.343 5.343 12 C -0.033 4.033 13 C -0.163 4.163 14 C 0.060 3.940 15 H 0.084 0.916 16 N -0.377 5.377 17 C -0.371 4.371 18 H 0.072 0.928 19 C -0.254 4.254 20 N -0.632 5.632 21 Si 0.784 3.216 22 H -0.209 1.209 23 H -0.163 1.163 24 H -0.223 1.223 25 C -0.035 4.035 26 S 0.529 5.471 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.114 0.886 36 H 0.177 0.823 37 H 0.158 0.842 38 H 0.110 0.890 39 H 0.115 0.885 40 H 0.130 0.870 41 H 0.109 0.891 42 H 0.207 0.793 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -30.596 10.541 10.230 33.939 hybrid contribution 1.660 0.734 1.037 2.090 sum -28.935 11.275 11.267 33.035 Atomic orbital electron populations 1.21824 0.93630 1.02415 1.02385 1.21122 0.96544 0.96357 0.97015 1.21921 1.00965 0.95901 1.02161 1.20432 0.85477 1.02712 0.99960 1.24941 1.02361 1.00283 1.03601 1.20000 0.90597 1.02469 1.05737 1.20873 0.98262 0.94235 0.95557 1.24328 0.96777 1.04340 1.16833 1.17163 0.88032 0.79489 0.77067 1.90789 1.38367 1.61743 1.56134 1.48366 1.09586 1.19674 1.56704 1.22364 0.88287 0.92229 1.00376 1.22909 0.94790 0.96582 1.01988 1.21412 0.89775 0.87985 0.94864 0.91577 1.42524 1.27242 1.14266 1.53654 1.19001 0.99978 0.99815 1.18286 0.92782 1.25582 0.96766 1.02061 1.00990 1.69901 1.16404 1.32848 1.44019 0.85378 0.79520 0.78851 0.77830 1.20926 1.16300 1.22276 1.23021 0.86071 0.95329 0.99088 1.83004 0.91625 1.19574 1.52853 0.91917 0.92400 0.91954 0.91630 0.93340 0.92701 0.91808 0.89259 0.88553 0.82251 0.84165 0.88954 0.88505 0.86970 0.89119 0.79339 0.93238 0.92088 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.19 71.98 0.66 -0.29 16 2 C -0.09 -0.82 2.91 -10.79 -0.03 -0.85 16 3 C -0.15 -1.55 8.87 71.98 0.64 -0.91 16 4 C -0.05 -0.41 5.12 29.85 0.15 -0.26 16 5 C -0.19 -2.72 5.05 24.68 0.12 -2.60 16 6 C -0.16 -2.61 8.50 21.08 0.18 -2.43 16 7 C -0.05 -1.26 10.01 21.72 0.22 -1.04 16 8 C -0.30 -7.83 6.38 24.07 0.15 -7.68 16 9 C 0.59 20.39 7.82 86.42 0.68 21.07 16 10 O -0.59 -25.49 17.10 -4.36 -0.07 -25.56 16 11 N -0.61 -19.26 3.33 -816.60 -2.72 -21.97 16 12 C 0.09 1.97 5.17 86.73 0.45 2.42 16 13 C -0.12 -2.96 6.60 31.78 0.21 -2.75 16 14 C 0.17 6.10 3.71 46.38 0.17 6.27 16 15 H 0.07 2.53 8.09 -2.38 -0.02 2.51 16 16 N -0.73 -32.51 5.05 -316.39 -1.60 -34.11 16 17 C -0.24 -13.45 10.44 84.03 0.88 -12.57 16 18 H 0.05 3.38 8.06 -2.91 -0.02 3.35 16 19 C -0.06 -3.62 5.50 84.86 0.47 -3.16 16 20 N -0.98 -62.83 13.97 21.65 0.30 -62.53 16 21 Si 0.96 44.07 27.74 68.60 1.90 45.98 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.24 -9.45 6.52 99.48 0.65 -8.80 16 24 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 25 C 0.09 3.41 6.60 86.85 0.57 3.99 16 26 S 0.26 4.27 18.38 -56.49 -1.04 3.23 16 27 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 28 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.63 6.38 -2.39 -0.02 0.61 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.10 0.65 8.14 -2.39 -0.02 0.64 16 36 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 38 H 0.09 1.67 6.82 -2.38 -0.02 1.66 16 39 H 0.10 1.66 6.99 -2.39 -0.02 1.65 16 40 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 41 H 0.09 1.99 8.00 -2.39 -0.02 1.98 16 42 H 0.37 15.32 5.62 -92.71 -0.52 14.80 16 43 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 44 H 0.06 2.36 8.14 -2.39 -0.02 2.35 16 45 H 0.04 1.93 8.04 -2.39 -0.02 1.91 16 Total: -1.00 -75.50 372.02 2.70 -72.80 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.40 Total: 22.94 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: 5.52 Total: -0.78 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -4.01 Total: -118.61 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.07 Total: -25.56 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.90 Total: 45.98 kcal Atomic # 16 Polarization: 4.27 SS G_CDS: -1.04 Total: 3.23 kcal Total: -75.50 2.70 -72.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018977960.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.524 kcal (2) G-P(sol) polarization free energy of solvation -75.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds