Wall clock time and date at job start Tue Mar 31 2020 13:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47174 * 2 1 4 4 C 1.50702 * 109.46958 * 179.97438 * 3 2 1 5 5 C 1.37469 * 122.45021 * 265.26532 * 4 3 2 6 6 C 1.36647 * 113.29718 * 180.24784 * 5 4 3 7 7 C 1.46579 * 125.45860 * 179.80098 * 6 5 4 8 8 O 1.21703 * 120.00026 * 359.71639 * 7 6 5 9 9 N 1.34777 * 119.99723 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.65414 * 359.42104 * 9 7 6 11 11 C 1.54327 * 107.26726 * 178.84801 * 10 9 7 12 12 C 1.55158 * 103.02347 * 338.13706 * 11 10 9 13 13 H 1.08998 * 111.00478 * 277.23772 * 12 11 10 14 14 N 1.46502 * 111.00209 * 153.38366 * 12 11 10 15 15 C 1.36935 * 119.99362 * 161.35535 * 14 12 11 16 16 H 1.07997 * 120.00251 * 359.97438 * 15 14 12 17 17 C 1.38818 * 119.99967 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99494 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00497 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47393 * 89.99815 * 19 17 15 21 21 H 1.48496 * 109.47416 * 210.00101 * 19 17 15 22 22 H 1.48504 * 109.46841 * 329.99994 * 19 17 15 23 23 C 1.47426 * 125.64501 * 179.72292 * 9 7 6 24 24 S 1.75839 * 109.08263 * 359.53415 * 6 5 4 25 25 C 1.33824 * 122.44512 * 85.00020 * 4 3 2 26 26 C 1.50690 * 124.52805 * 359.97438 * 25 4 3 27 27 H 1.09003 * 109.47188 * 299.99921 * 1 2 3 28 28 H 1.08996 * 109.47561 * 60.00442 * 1 2 3 29 29 H 1.09006 * 109.47234 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47147 * 239.99344 * 2 1 3 31 31 H 1.09003 * 109.46758 * 119.99794 * 2 1 3 32 32 H 1.08994 * 109.47173 * 59.99822 * 3 2 1 33 33 H 1.09003 * 109.47110 * 299.99578 * 3 2 1 34 34 H 1.07999 * 123.35116 * 0.03989 * 5 4 3 35 35 H 1.09000 * 109.87472 * 298.39596 * 10 9 7 36 36 H 1.09001 * 109.88091 * 59.55587 * 10 9 7 37 37 H 1.09007 * 110.84971 * 219.67006 * 11 10 9 38 38 H 1.08999 * 110.52069 * 96.45437 * 11 10 9 39 39 H 0.96992 * 120.00339 * 341.35018 * 14 12 11 40 40 H 0.96996 * 119.99608 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.37118 * 322.92986 * 23 9 7 42 42 H 1.09000 * 110.36798 * 85.14520 * 23 9 7 43 43 H 1.09001 * 109.47545 * 180.02562 * 26 25 4 44 44 H 1.09003 * 109.47005 * 300.02662 * 26 25 4 45 45 H 1.09001 * 109.47499 * 60.02033 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2841 1.5383 1.1570 6 6 5.6333 1.5257 0.9405 7 6 6.6622 1.6174 1.9804 8 8 6.3388 1.7196 3.1492 9 7 7.9665 1.5938 1.6417 10 6 8.4950 1.4684 0.2755 11 6 10.0344 1.5172 0.3735 12 6 10.2759 2.2273 1.7318 13 1 10.2115 3.3100 1.6235 14 7 11.5647 1.8349 2.3075 15 6 12.1430 2.6058 3.2803 16 1 11.6493 3.5032 3.6227 17 6 13.3638 2.2338 3.8263 18 7 13.9652 1.1398 3.4093 19 14 14.1532 3.2858 5.1528 20 1 13.6966 2.8236 6.4881 21 1 15.6307 3.1656 5.0660 22 1 13.7597 4.7045 4.9588 23 6 9.0997 1.6832 2.5805 24 16 5.9373 1.3741 -0.7847 25 6 4.2654 1.3438 -1.1241 26 6 3.6766 1.2222 -2.5058 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.8410 1.6192 2.1386 35 1 8.1791 0.5197 -0.1584 36 1 8.1380 2.2960 -0.3375 37 1 10.4571 2.0985 -0.4461 38 1 10.4486 0.5091 0.3863 39 1 12.0082 1.0291 1.9998 40 1 14.8181 0.8797 3.7911 41 1 8.8668 2.3727 3.3919 42 1 9.3411 0.6977 2.9787 43 1 4.4805 1.1575 -3.2391 44 1 3.0615 0.3240 -2.5609 45 1 3.0616 2.0970 -2.7171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019748768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:54 Heat of formation + Delta-G solvation = -7.426891 kcal Electronic energy + Delta-G solvation = -24370.607974 eV Core-core repulsion = 20900.237108 eV Total energy + Delta-G solvation = -3470.370866 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.87581 -38.92289 -37.19312 -34.44189 -34.19148 -32.28021 -31.51657 -29.71437 -28.90517 -27.82605 -25.86005 -24.34728 -23.27147 -22.56198 -21.86153 -20.25745 -19.68669 -18.34025 -17.99007 -17.24920 -16.26724 -16.02770 -15.58482 -15.05016 -14.75996 -14.54270 -14.37071 -13.94830 -13.70200 -13.50567 -13.33716 -13.26020 -13.00851 -12.87689 -12.56631 -12.42305 -12.30639 -12.08838 -12.02501 -11.72536 -11.57546 -11.40871 -11.13635 -10.97113 -10.90607 -10.75387 -10.56522 -10.35819 -10.06041 -9.88986 -9.75850 -9.04082 -8.82323 -8.51715 -8.32105 -7.10420 -5.85467 -3.16409 0.44743 1.38938 1.80774 2.24202 3.12216 3.30827 3.41385 3.47108 3.48010 4.48742 4.52173 4.53977 4.68733 4.73781 4.84268 4.85047 4.92122 5.11880 5.13069 5.21683 5.23530 5.30948 5.37393 5.44297 5.49919 5.53261 5.59040 5.62598 5.69935 5.71276 5.78828 5.86821 5.88836 6.00460 6.08003 6.19666 6.20429 6.32315 6.32702 6.47593 6.58180 6.84823 7.64906 7.68195 8.27703 8.32365 9.44238 9.96400 10.31534 11.36496 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030628 B = 0.002442 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.969809 B =11464.778699 C =12069.179732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.058 4.058 4 C -0.121 4.121 5 C -0.052 4.052 6 C -0.257 4.257 7 C 0.597 3.403 8 O -0.536 6.536 9 N -0.609 5.609 10 C 0.092 3.908 11 C -0.134 4.134 12 C 0.172 3.828 13 H 0.066 0.934 14 N -0.711 5.711 15 C -0.248 4.248 16 H 0.073 0.927 17 C -0.009 4.009 18 N -0.930 5.930 19 Si 0.910 3.090 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.084 3.916 24 S 0.215 5.785 25 C -0.218 4.218 26 C -0.081 4.081 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.149 0.851 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.388 0.612 40 H 0.257 0.743 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.684 -1.488 -14.892 28.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.097 4.097 4 C -0.134 4.134 5 C -0.085 4.085 6 C -0.377 4.377 7 C 0.385 3.615 8 O -0.415 6.415 9 N -0.342 5.342 10 C -0.033 4.033 11 C -0.173 4.173 12 C 0.060 3.940 13 H 0.084 0.916 14 N -0.351 5.351 15 C -0.379 4.379 16 H 0.091 0.909 17 C -0.205 4.205 18 N -0.577 5.577 19 Si 0.740 3.260 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.206 1.206 23 C -0.041 4.041 24 S 0.485 5.515 25 C -0.337 4.337 26 C -0.139 4.139 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.167 0.833 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.222 0.778 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.484 -1.380 -15.038 27.085 hybrid contribution -0.741 0.244 1.533 1.720 sum -23.225 -1.136 -13.505 26.890 Atomic orbital electron populations 1.21785 0.95711 1.01670 1.01806 1.21493 0.95509 0.96281 1.02430 1.20309 0.89390 0.97286 1.02754 1.18577 0.97223 1.06181 0.91378 1.20556 0.90957 0.97303 0.99694 1.24536 0.97900 1.18271 0.97000 1.16605 0.80493 0.77241 0.87139 1.90824 1.80944 1.51235 1.18512 1.48400 1.05063 1.71446 1.09322 1.22127 0.96138 1.01142 0.83903 1.22873 0.91776 1.02668 0.99982 1.21316 0.86066 0.97121 0.89495 0.91612 1.42295 1.17856 1.29710 1.45243 1.19254 1.01519 1.04547 1.12602 0.90893 1.24779 0.97716 0.97823 1.00213 1.69660 1.17796 1.24793 1.45485 0.86158 0.78448 0.79656 0.81728 1.21537 1.21704 1.20620 1.23477 0.85024 1.02119 0.93506 1.83391 1.01411 1.67612 0.99080 1.24369 1.00429 1.08770 1.00110 1.20327 1.00703 1.02849 0.90013 0.92644 0.92786 0.92725 0.91988 0.91758 0.90997 0.91097 0.83292 0.91229 0.91156 0.89815 0.90133 0.77792 0.93332 0.90796 0.91153 0.91484 0.90575 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.53 16 2 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 3 C -0.06 -0.45 5.11 -27.88 -0.14 -0.59 16 4 C -0.12 -1.24 5.04 -106.45 -0.54 -1.77 16 5 C -0.05 -0.66 9.78 -40.44 -0.40 -1.05 16 6 C -0.26 -3.60 6.38 -36.79 -0.23 -3.83 16 7 C 0.60 10.46 7.82 -12.90 -0.10 10.36 16 8 O -0.54 -11.24 17.10 5.19 0.09 -11.15 16 9 N -0.61 -10.16 3.33 -172.09 -0.57 -10.73 16 10 C 0.09 1.21 5.17 -3.06 -0.02 1.20 16 11 C -0.13 -1.97 6.57 -24.89 -0.16 -2.13 16 12 C 0.17 3.29 3.69 -65.78 -0.24 3.05 16 13 H 0.07 1.28 8.13 -51.93 -0.42 0.85 16 14 N -0.71 -17.06 5.28 -51.35 -0.27 -17.33 16 15 C -0.25 -6.71 9.98 -15.06 -0.15 -6.86 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 18 N -0.93 -27.38 13.06 55.49 0.72 -26.65 16 19 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.08 1.61 6.60 -2.53 -0.02 1.59 16 24 S 0.21 2.25 18.36 -107.50 -1.97 0.28 16 25 C -0.22 -2.06 6.28 -35.86 -0.23 -2.29 16 26 C -0.08 -0.52 9.44 36.00 0.34 -0.18 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.43 7.40 -51.93 -0.38 0.05 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 33 H 0.07 0.47 7.45 -51.93 -0.39 0.09 16 34 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.07 0.81 7.02 -51.93 -0.36 0.45 16 36 H 0.07 0.82 6.79 -51.93 -0.35 0.46 16 37 H 0.08 1.09 8.14 -51.92 -0.42 0.66 16 38 H 0.08 1.19 8.00 -51.93 -0.42 0.78 16 39 H 0.39 9.76 7.71 -40.82 -0.31 9.45 16 40 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 41 H 0.07 1.54 8.04 -51.93 -0.42 1.12 16 42 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 43 H 0.07 0.38 8.11 -51.93 -0.42 -0.04 16 44 H 0.08 0.43 7.40 -51.93 -0.38 0.05 16 45 H 0.08 0.43 7.92 -51.93 -0.41 0.01 16 LS Contribution 376.31 15.07 5.67 5.67 Total: -1.00 -31.71 376.31 -10.33 -42.04 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -7.20 Total: 5.16 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -1.77 Total: -4.40 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.12 Total: -54.71 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.15 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -1.97 Total: 0.28 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.71 -10.33 -42.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019748768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.611 kcal (2) G-P(sol) polarization free energy of solvation -31.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds