Wall clock time and date at job start Tue Mar 31 2020 13:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47174 * 2 1 4 4 C 1.50702 * 109.46958 * 179.97438 * 3 2 1 5 5 C 1.37469 * 122.45021 * 265.26532 * 4 3 2 6 6 C 1.36647 * 113.29718 * 180.24784 * 5 4 3 7 7 C 1.46579 * 125.45860 * 179.80098 * 6 5 4 8 8 O 1.21703 * 120.00026 * 359.71639 * 7 6 5 9 9 N 1.34777 * 119.99723 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.65414 * 359.42104 * 9 7 6 11 11 C 1.54327 * 107.26726 * 178.84801 * 10 9 7 12 12 C 1.55158 * 103.02347 * 338.13706 * 11 10 9 13 13 H 1.08998 * 111.00478 * 277.23772 * 12 11 10 14 14 N 1.46502 * 111.00209 * 153.38366 * 12 11 10 15 15 C 1.36935 * 119.99362 * 161.35535 * 14 12 11 16 16 H 1.07997 * 120.00251 * 359.97438 * 15 14 12 17 17 C 1.38818 * 119.99967 * 179.97438 * 15 14 12 18 18 N 1.31624 * 119.99494 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00497 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47393 * 89.99815 * 19 17 15 21 21 H 1.48496 * 109.47416 * 210.00101 * 19 17 15 22 22 H 1.48504 * 109.46841 * 329.99994 * 19 17 15 23 23 C 1.47426 * 125.64501 * 179.72292 * 9 7 6 24 24 S 1.75839 * 109.08263 * 359.53415 * 6 5 4 25 25 C 1.33824 * 122.44512 * 85.00020 * 4 3 2 26 26 C 1.50690 * 124.52805 * 359.97438 * 25 4 3 27 27 H 1.09003 * 109.47188 * 299.99921 * 1 2 3 28 28 H 1.08996 * 109.47561 * 60.00442 * 1 2 3 29 29 H 1.09006 * 109.47234 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47147 * 239.99344 * 2 1 3 31 31 H 1.09003 * 109.46758 * 119.99794 * 2 1 3 32 32 H 1.08994 * 109.47173 * 59.99822 * 3 2 1 33 33 H 1.09003 * 109.47110 * 299.99578 * 3 2 1 34 34 H 1.07999 * 123.35116 * 0.03989 * 5 4 3 35 35 H 1.09000 * 109.87472 * 298.39596 * 10 9 7 36 36 H 1.09001 * 109.88091 * 59.55587 * 10 9 7 37 37 H 1.09007 * 110.84971 * 219.67006 * 11 10 9 38 38 H 1.08999 * 110.52069 * 96.45437 * 11 10 9 39 39 H 0.96992 * 120.00339 * 341.35018 * 14 12 11 40 40 H 0.96996 * 119.99608 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.37118 * 322.92986 * 23 9 7 42 42 H 1.09000 * 110.36798 * 85.14520 * 23 9 7 43 43 H 1.09001 * 109.47545 * 180.02562 * 26 25 4 44 44 H 1.09003 * 109.47005 * 300.02662 * 26 25 4 45 45 H 1.09001 * 109.47499 * 60.02033 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.2841 1.5383 1.1570 6 6 5.6333 1.5257 0.9405 7 6 6.6622 1.6174 1.9804 8 8 6.3388 1.7196 3.1492 9 7 7.9665 1.5938 1.6417 10 6 8.4950 1.4684 0.2755 11 6 10.0344 1.5172 0.3735 12 6 10.2759 2.2273 1.7318 13 1 10.2115 3.3100 1.6235 14 7 11.5647 1.8349 2.3075 15 6 12.1430 2.6058 3.2803 16 1 11.6493 3.5032 3.6227 17 6 13.3638 2.2338 3.8263 18 7 13.9652 1.1398 3.4093 19 14 14.1532 3.2858 5.1528 20 1 13.6966 2.8236 6.4881 21 1 15.6307 3.1656 5.0660 22 1 13.7597 4.7045 4.9588 23 6 9.0997 1.6832 2.5805 24 16 5.9373 1.3741 -0.7847 25 6 4.2654 1.3438 -1.1241 26 6 3.6766 1.2222 -2.5058 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8932 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9563 -0.8900 34 1 3.8410 1.6192 2.1386 35 1 8.1791 0.5197 -0.1584 36 1 8.1380 2.2960 -0.3375 37 1 10.4571 2.0985 -0.4461 38 1 10.4486 0.5091 0.3863 39 1 12.0082 1.0291 1.9998 40 1 14.8181 0.8797 3.7911 41 1 8.8668 2.3727 3.3919 42 1 9.3411 0.6977 2.9787 43 1 4.4805 1.1575 -3.2391 44 1 3.0615 0.3240 -2.5609 45 1 3.0616 2.0970 -2.7171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019748768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:53 Heat of formation + Delta-G solvation = -25.871240 kcal Electronic energy + Delta-G solvation = -24371.407781 eV Core-core repulsion = 20900.237108 eV Total energy + Delta-G solvation = -3471.170673 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18872 -39.83259 -38.60241 -36.01057 -35.09525 -33.54291 -32.82070 -31.23657 -29.86745 -29.03791 -26.89739 -25.78461 -24.62823 -23.66570 -22.59072 -21.72113 -20.79102 -19.48897 -19.20442 -18.92673 -17.55036 -17.16055 -16.85344 -16.40682 -15.82589 -15.66518 -15.29945 -15.24468 -15.03883 -14.81799 -14.40075 -14.33267 -13.98826 -13.87169 -13.81183 -13.60046 -13.24306 -12.96391 -12.91983 -12.84494 -12.73292 -12.67264 -12.37058 -12.30419 -12.13160 -11.98701 -11.83195 -11.70762 -11.51819 -11.33343 -11.26278 -11.02037 -9.99385 -9.47991 -9.31744 -9.10620 -7.99136 -5.29249 -0.50888 0.48945 0.94610 1.30309 1.46630 1.48431 1.56178 1.80760 2.08280 2.53826 3.29485 3.45076 3.54274 3.84549 3.88328 3.99291 4.07623 4.12057 4.14224 4.26646 4.28412 4.32672 4.47778 4.54300 4.55092 4.66687 4.72940 4.76847 4.77252 4.90761 4.91674 4.95082 5.03856 5.10662 5.13018 5.13774 5.20816 5.23779 5.30940 5.43861 5.50113 5.50684 5.57800 6.22612 6.36830 6.93123 7.30335 8.00321 8.25435 9.23343 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.030628 B = 0.002442 C = 0.002319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.969809 B =11464.778699 C =12069.179732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.055 4.055 4 C -0.135 4.135 5 C -0.049 4.049 6 C -0.302 4.302 7 C 0.592 3.408 8 O -0.588 6.588 9 N -0.610 5.610 10 C 0.093 3.907 11 C -0.121 4.121 12 C 0.167 3.833 13 H 0.065 0.935 14 N -0.721 5.721 15 C -0.248 4.248 16 H 0.074 0.926 17 C -0.068 4.068 18 N -0.963 5.963 19 Si 0.970 3.030 20 H -0.291 1.291 21 H -0.292 1.292 22 H -0.270 1.270 23 C 0.093 3.907 24 S 0.257 5.743 25 C -0.200 4.200 26 C -0.084 4.084 27 H 0.052 0.948 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.137 0.863 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.380 0.620 40 H 0.253 0.747 41 H 0.047 0.953 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.487 -1.076 -18.110 31.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.094 4.094 4 C -0.146 4.146 5 C -0.084 4.084 6 C -0.422 4.422 7 C 0.383 3.617 8 O -0.471 6.471 9 N -0.343 5.343 10 C -0.030 4.030 11 C -0.160 4.160 12 C 0.057 3.943 13 H 0.083 0.917 14 N -0.360 5.360 15 C -0.380 4.380 16 H 0.092 0.908 17 C -0.261 4.261 18 N -0.613 5.613 19 Si 0.799 3.201 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.194 1.194 23 C -0.033 4.033 24 S 0.528 5.472 25 C -0.320 4.320 26 C -0.143 4.143 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.154 0.846 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.128 0.872 38 H 0.099 0.901 39 H 0.213 0.787 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.099 0.901 44 H 0.109 0.891 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -24.318 -0.951 -18.304 30.452 hybrid contribution -0.334 0.106 2.442 2.467 sum -24.653 -0.844 -15.862 29.327 Atomic orbital electron populations 1.21766 0.94655 1.02040 1.02289 1.21468 0.96399 0.95725 1.01898 1.20348 0.87663 0.97837 1.03551 1.18713 0.98502 1.06792 0.90611 1.20705 0.90957 0.96390 1.00337 1.24245 0.97247 1.22024 0.98649 1.17144 0.81064 0.76106 0.87411 1.90776 1.81766 1.53645 1.20888 1.48402 1.04413 1.71264 1.10186 1.22336 0.94910 1.03436 0.82298 1.22818 0.92940 1.02459 0.97757 1.21452 0.83710 0.97501 0.91686 0.91680 1.42399 1.19407 1.29183 1.45043 1.19577 1.01349 1.04445 1.12597 0.90843 1.25527 0.98663 0.99252 1.02672 1.69792 1.18064 1.26437 1.46999 0.85196 0.77236 0.78685 0.78973 1.21833 1.21834 1.19437 1.23067 0.86422 1.00240 0.93535 1.83026 1.02091 1.66698 0.95382 1.24857 0.99865 1.05769 1.01479 1.20527 1.01532 1.04261 0.87932 0.92872 0.91605 0.92452 0.91389 0.93441 0.91311 0.89208 0.84552 0.88931 0.88700 0.87174 0.90103 0.78709 0.93829 0.93447 0.93149 0.90110 0.89107 0.88922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.91 71.98 0.71 -0.73 16 2 C -0.12 -1.44 5.92 30.59 0.18 -1.26 16 3 C -0.05 -0.73 5.11 29.85 0.15 -0.58 16 4 C -0.13 -2.49 5.04 -21.05 -0.11 -2.59 16 5 C -0.05 -1.24 9.78 21.72 0.21 -1.03 16 6 C -0.30 -8.35 6.38 24.08 0.15 -8.20 16 7 C 0.59 21.39 7.82 86.42 0.68 22.06 16 8 O -0.59 -26.23 17.10 -4.36 -0.07 -26.31 16 9 N -0.61 -20.53 3.33 -816.58 -2.72 -23.25 16 10 C 0.09 2.28 5.17 86.73 0.45 2.73 16 11 C -0.12 -3.34 6.57 31.78 0.21 -3.13 16 12 C 0.17 6.40 3.69 46.38 0.17 6.58 16 13 H 0.07 2.51 8.13 -2.39 -0.02 2.49 16 14 N -0.72 -35.15 5.28 -316.37 -1.67 -36.82 16 15 C -0.25 -13.60 9.98 84.04 0.84 -12.77 16 16 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 17 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 18 N -0.96 -57.77 13.06 21.65 0.28 -57.49 16 19 Si 0.97 46.15 29.55 68.60 2.03 48.17 16 20 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 21 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 C 0.09 3.73 6.60 86.86 0.57 4.30 16 24 S 0.26 4.65 18.36 -56.49 -1.04 3.62 16 25 C -0.20 -3.11 6.28 24.68 0.15 -2.96 16 26 C -0.08 -0.69 9.44 71.23 0.67 -0.02 16 27 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 30 H 0.07 0.75 7.40 -2.39 -0.02 0.73 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.96 8.10 -2.39 -0.02 0.94 16 33 H 0.09 0.87 7.45 -2.39 -0.02 0.85 16 34 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 35 H 0.09 1.89 7.02 -2.39 -0.02 1.87 16 36 H 0.10 1.89 6.79 -2.39 -0.02 1.88 16 37 H 0.11 2.50 8.14 -2.38 -0.02 2.48 16 38 H 0.08 2.26 8.00 -2.39 -0.02 2.24 16 39 H 0.38 19.50 7.71 -92.71 -0.71 18.79 16 40 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.05 2.10 8.04 -2.39 -0.02 2.08 16 42 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.08 0.50 8.11 -2.39 -0.02 0.48 16 44 H 0.09 0.58 7.40 -2.39 -0.02 0.56 16 45 H 0.09 0.56 7.92 -2.39 -0.02 0.54 16 Total: -1.00 -71.61 376.31 2.60 -69.01 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 0.27 Total: 24.06 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: 5.52 Total: -1.00 kcal Atomic # 7 Polarization: -113.45 SS G_CDS: -4.10 Total: -117.56 kcal Atomic # 8 Polarization: -26.23 SS G_CDS: -0.07 Total: -26.31 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 16 Polarization: 4.65 SS G_CDS: -1.04 Total: 3.62 kcal Total: -71.61 2.60 -69.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019748768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.141 kcal (2) G-P(sol) polarization free energy of solvation -71.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds