Wall clock time and date at job start Tue Mar 31 2020 13:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47020 * 2 1 4 4 C 1.52996 * 109.47137 * 239.99785 * 2 1 3 5 5 C 1.50701 * 109.47103 * 119.99540 * 2 1 3 6 6 C 1.33824 * 124.51980 * 59.99915 * 5 2 1 7 7 C 1.37475 * 115.09917 * 179.97438 * 6 5 2 8 8 C 1.36646 * 113.29812 * 0.02562 * 7 6 5 9 9 C 1.46581 * 125.45655 * 179.97438 * 8 7 6 10 10 O 1.21698 * 120.00084 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99821 * 179.97438 * 9 8 7 12 12 C 1.47022 * 125.64810 * 0.03029 * 11 9 8 13 13 C 1.54322 * 107.27131 * 178.88877 * 12 11 9 14 14 C 1.55159 * 102.94499 * 337.80902 * 13 12 11 15 15 H 1.08997 * 111.00112 * 277.39164 * 14 13 12 16 16 N 1.46490 * 111.00840 * 153.57161 * 14 13 12 17 17 C 1.36935 * 120.00121 * 154.99548 * 16 14 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47055 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46653 * 299.99639 * 21 19 17 24 24 H 1.48495 * 109.47483 * 60.00002 * 21 19 17 25 25 C 1.47426 * 125.64833 * 179.97438 * 11 9 8 26 26 S 1.70612 * 124.52579 * 240.27211 * 5 2 1 27 27 H 1.09007 * 109.47223 * 300.00362 * 1 2 3 28 28 H 1.09000 * 109.46927 * 60.00264 * 1 2 3 29 29 H 1.08998 * 109.47499 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46957 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47055 * 299.99658 * 3 2 1 32 32 H 1.08993 * 109.47280 * 59.99752 * 3 2 1 33 33 H 1.09006 * 109.46816 * 299.99941 * 4 2 1 34 34 H 1.09000 * 109.47252 * 60.00150 * 4 2 1 35 35 H 1.09003 * 109.47090 * 180.02562 * 4 2 1 36 36 H 1.08003 * 122.44804 * 0.02562 * 6 5 2 37 37 H 1.08005 * 123.34587 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.88394 * 59.47296 * 12 11 9 39 39 H 1.08994 * 110.00900 * 298.37942 * 12 11 9 40 40 H 1.08998 * 110.72649 * 219.43940 * 13 12 11 41 41 H 1.09001 * 110.71965 * 96.16489 * 13 12 11 42 42 H 0.97000 * 120.00577 * 335.00148 * 16 14 13 43 43 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 44 44 H 1.09006 * 110.36031 * 85.34171 * 25 11 9 45 45 H 1.08995 * 110.37034 * 323.02592 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.7653 -1.9866 1.5315 7 6 2.3239 -2.4385 2.7036 8 6 3.0585 -1.4874 3.3541 9 6 3.7669 -1.6806 4.6227 10 8 3.7287 -2.7604 5.1827 11 7 4.4616 -0.6627 5.1684 12 6 4.5914 0.6874 4.6010 13 6 5.4497 1.5154 5.5804 14 6 5.2832 0.7509 6.9203 15 1 4.3598 1.0394 7.4225 16 7 6.4406 0.9626 7.7930 17 6 6.3073 0.8353 9.1499 18 1 5.3491 0.5785 9.5767 19 6 7.4039 1.0364 9.9770 20 7 8.5717 1.3499 9.4569 21 14 7.2222 0.8621 11.8279 22 1 8.5297 1.1261 12.4807 23 1 6.2174 1.8382 12.3207 24 1 6.7751 -0.5159 12.1539 25 6 5.2161 -0.7183 6.4337 26 16 3.0118 0.0072 2.4291 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2489 36 1 1.1563 -2.6159 0.8995 37 1 2.1943 -3.4448 3.0738 38 1 3.6062 1.1418 4.4962 39 1 5.0819 0.6378 3.6289 40 1 5.0652 2.5317 5.6659 41 1 6.4938 1.5220 5.2675 42 1 7.3014 1.1930 7.4098 43 1 8.6661 1.4401 8.4957 44 1 6.2197 -1.1067 6.2601 45 1 4.6904 -1.3356 7.1622 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001019803841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:32 Heat of formation + Delta-G solvation = -0.554001 kcal Electronic energy + Delta-G solvation = -24706.948885 eV Core-core repulsion = 21236.876050 eV Total energy + Delta-G solvation = -3470.072835 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.88312 -38.99283 -37.41873 -35.97712 -34.48606 -31.75257 -29.64255 -29.50208 -27.87013 -27.66543 -27.35617 -25.20883 -23.69877 -22.72325 -21.00954 -20.67339 -20.14317 -18.18172 -17.84617 -17.50178 -16.12848 -15.95649 -15.90062 -14.98740 -14.77532 -14.60005 -14.37688 -14.25254 -13.73080 -13.52110 -13.36458 -13.12043 -12.99973 -12.88331 -12.59068 -12.46487 -12.26696 -12.19859 -12.09698 -11.69852 -11.58436 -11.38247 -11.33030 -11.21677 -10.81190 -10.70249 -10.54442 -10.36594 -10.01869 -9.90742 -9.25945 -9.06261 -8.87225 -8.69849 -8.37854 -7.18742 -6.18857 -3.21444 0.42776 1.35992 1.80856 2.29490 3.07441 3.28403 3.50182 3.53349 3.70504 4.13365 4.41977 4.51850 4.55984 4.60814 4.77539 4.85041 5.04660 5.14421 5.17503 5.20155 5.20451 5.33381 5.33443 5.39301 5.44806 5.46726 5.54312 5.58436 5.63941 5.68535 5.78117 5.79530 5.87337 5.90874 5.93434 6.05663 6.10952 6.22404 6.23929 6.40255 6.50944 6.74032 7.62845 7.73369 8.23728 8.66744 9.09656 9.96304 10.08739 11.28878 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028815 B = 0.002600 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.495696 B =10764.955396 C =11326.360721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.001 3.999 3 C -0.155 4.155 4 C -0.136 4.136 5 C -0.202 4.202 6 C -0.153 4.153 7 C -0.057 4.057 8 C -0.265 4.265 9 C 0.598 3.402 10 O -0.536 6.536 11 N -0.609 5.609 12 C 0.092 3.908 13 C -0.137 4.137 14 C 0.178 3.822 15 H 0.071 0.929 16 N -0.721 5.721 17 C -0.340 4.340 18 H 0.068 0.932 19 C -0.040 4.040 20 N -0.939 5.939 21 Si 1.080 2.920 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.294 1.294 25 C 0.084 3.916 26 S 0.223 5.777 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.138 0.862 37 H 0.150 0.850 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.370 0.630 43 H 0.255 0.745 44 H 0.067 0.933 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.391 0.059 -23.363 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.001 4.001 3 C -0.212 4.212 4 C -0.194 4.194 5 C -0.321 4.321 6 C -0.183 4.183 7 C -0.090 4.090 8 C -0.385 4.385 9 C 0.386 3.614 10 O -0.415 6.415 11 N -0.343 5.343 12 C -0.033 4.033 13 C -0.176 4.176 14 C 0.065 3.935 15 H 0.089 0.911 16 N -0.362 5.362 17 C -0.471 4.471 18 H 0.086 0.914 19 C -0.238 4.238 20 N -0.584 5.584 21 Si 0.910 3.090 22 H -0.210 1.210 23 H -0.221 1.221 24 H -0.221 1.221 25 C -0.041 4.041 26 S 0.493 5.507 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.155 0.845 37 H 0.167 0.833 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.204 0.796 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.174 0.934 -21.271 25.578 hybrid contribution -1.289 -1.646 -1.958 2.865 sum -15.463 -0.712 -23.230 27.914 Atomic orbital electron populations 1.21889 0.93017 1.02385 1.02144 1.19130 0.95898 0.94463 0.90613 1.22017 1.01656 0.94749 1.02808 1.21887 1.01459 1.00341 0.95735 1.24633 1.05451 0.99435 1.02627 1.19818 1.04681 0.95367 0.98433 1.20686 0.94680 1.00118 0.93534 1.24670 1.11685 0.99598 1.02555 1.16628 0.78386 0.83386 0.83028 1.90823 1.63169 1.24825 1.62669 1.48372 1.50105 1.10912 1.24892 1.22103 1.00415 0.83191 0.97542 1.22935 0.99981 0.99040 0.95684 1.21251 0.92817 0.90220 0.89186 0.91122 1.42301 1.06769 1.83664 1.03479 1.20067 0.97988 1.46140 0.82895 0.91447 1.25829 0.92291 0.99550 1.06098 1.70904 1.24012 1.50454 1.13004 0.83244 0.75447 0.75953 0.74317 1.20966 1.22121 1.22077 1.23431 0.95325 1.02205 0.83124 1.83368 1.44969 1.11226 1.11115 0.92276 0.91981 0.92206 0.91904 0.91323 0.91900 0.92211 0.91980 0.92288 0.84454 0.83287 0.91134 0.91229 0.89829 0.90378 0.79560 0.93335 0.91421 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 8.33 37.16 0.31 -0.54 16 2 C 0.00 0.01 0.90 -155.66 -0.14 -0.14 16 3 C -0.15 -0.98 7.52 37.16 0.28 -0.70 16 4 C -0.14 -0.84 8.33 37.16 0.31 -0.54 16 5 C -0.20 -1.89 4.97 -35.86 -0.18 -2.06 16 6 C -0.15 -1.52 9.18 -41.41 -0.38 -1.90 16 7 C -0.06 -0.71 10.01 -40.43 -0.40 -1.11 16 8 C -0.26 -3.69 6.38 -36.79 -0.23 -3.93 16 9 C 0.60 10.48 7.82 -12.90 -0.10 10.38 16 10 O -0.54 -11.26 17.10 5.19 0.09 -11.17 16 11 N -0.61 -10.18 3.33 -172.09 -0.57 -10.75 16 12 C 0.09 1.22 5.17 -3.06 -0.02 1.21 16 13 C -0.14 -2.02 6.60 -24.90 -0.16 -2.19 16 14 C 0.18 3.43 3.71 -65.78 -0.24 3.18 16 15 H 0.07 1.40 8.09 -51.93 -0.42 0.98 16 16 N -0.72 -17.33 5.24 -51.35 -0.27 -17.60 16 17 C -0.34 -9.33 9.96 -15.06 -0.15 -9.48 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C -0.04 -1.13 5.50 -17.43 -0.10 -1.22 16 20 N -0.94 -28.43 13.70 55.49 0.76 -27.67 16 21 Si 1.08 25.61 29.92 -169.99 -5.09 20.53 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 25 C 0.08 1.62 6.60 -2.52 -0.02 1.61 16 26 S 0.22 2.31 16.71 -107.50 -1.80 0.51 16 27 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.37 7.86 -51.93 -0.41 -0.04 16 30 H 0.06 0.41 7.91 -51.93 -0.41 0.00 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 33 H 0.06 0.37 7.86 -51.93 -0.41 -0.04 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.14 1.09 7.90 -52.48 -0.41 0.68 16 37 H 0.15 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.07 0.82 6.81 -51.93 -0.35 0.47 16 39 H 0.07 0.81 7.00 -51.93 -0.36 0.45 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 1.15 8.00 -51.93 -0.42 0.73 16 42 H 0.37 9.08 6.60 -40.82 -0.27 8.81 16 43 H 0.26 7.55 6.77 -40.82 -0.28 7.27 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 45 H 0.07 1.58 8.04 -51.93 -0.42 1.16 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -32.76 371.89 -9.65 -42.41 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.16 Total: 5.55 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -1.23 Total: -7.42 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.08 Total: -56.01 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -5.09 Total: 20.53 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -1.80 Total: 0.51 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.76 -9.65 -42.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019803841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.857 kcal (2) G-P(sol) polarization free energy of solvation -32.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds