Wall clock time and date at job start Tue Mar 31 2020 13:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47020 * 2 1 4 4 C 1.52996 * 109.47137 * 239.99785 * 2 1 3 5 5 C 1.50701 * 109.47103 * 119.99540 * 2 1 3 6 6 C 1.33824 * 124.51980 * 59.99915 * 5 2 1 7 7 C 1.37475 * 115.09917 * 179.97438 * 6 5 2 8 8 C 1.36646 * 113.29812 * 0.02562 * 7 6 5 9 9 C 1.46581 * 125.45655 * 179.97438 * 8 7 6 10 10 O 1.21698 * 120.00084 * 0.02562 * 9 8 7 11 11 N 1.34778 * 119.99821 * 179.97438 * 9 8 7 12 12 C 1.47022 * 125.64810 * 0.03029 * 11 9 8 13 13 C 1.54322 * 107.27131 * 178.88877 * 12 11 9 14 14 C 1.55159 * 102.94499 * 337.80902 * 13 12 11 15 15 H 1.08997 * 111.00112 * 277.39164 * 14 13 12 16 16 N 1.46490 * 111.00840 * 153.57161 * 14 13 12 17 17 C 1.36935 * 120.00121 * 154.99548 * 16 14 13 18 18 H 1.07997 * 120.00139 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00401 * 180.02562 * 17 16 14 20 20 N 1.31624 * 119.99569 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00172 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47055 * 180.02562 * 21 19 17 23 23 H 1.48505 * 109.46653 * 299.99639 * 21 19 17 24 24 H 1.48495 * 109.47483 * 60.00002 * 21 19 17 25 25 C 1.47426 * 125.64833 * 179.97438 * 11 9 8 26 26 S 1.70612 * 124.52579 * 240.27211 * 5 2 1 27 27 H 1.09007 * 109.47223 * 300.00362 * 1 2 3 28 28 H 1.09000 * 109.46927 * 60.00264 * 1 2 3 29 29 H 1.08998 * 109.47499 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46957 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47055 * 299.99658 * 3 2 1 32 32 H 1.08993 * 109.47280 * 59.99752 * 3 2 1 33 33 H 1.09006 * 109.46816 * 299.99941 * 4 2 1 34 34 H 1.09000 * 109.47252 * 60.00150 * 4 2 1 35 35 H 1.09003 * 109.47090 * 180.02562 * 4 2 1 36 36 H 1.08003 * 122.44804 * 0.02562 * 6 5 2 37 37 H 1.08005 * 123.34587 * 179.97438 * 7 6 5 38 38 H 1.08997 * 109.88394 * 59.47296 * 12 11 9 39 39 H 1.08994 * 110.00900 * 298.37942 * 12 11 9 40 40 H 1.08998 * 110.72649 * 219.43940 * 13 12 11 41 41 H 1.09001 * 110.71965 * 96.16489 * 13 12 11 42 42 H 0.97000 * 120.00577 * 335.00148 * 16 14 13 43 43 H 0.97001 * 119.99885 * 359.97438 * 20 19 17 44 44 H 1.09006 * 110.36031 * 85.34171 * 25 11 9 45 45 H 1.08995 * 110.37034 * 323.02592 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.7653 -1.9866 1.5315 7 6 2.3239 -2.4385 2.7036 8 6 3.0585 -1.4874 3.3541 9 6 3.7669 -1.6806 4.6227 10 8 3.7287 -2.7604 5.1827 11 7 4.4616 -0.6627 5.1684 12 6 4.5914 0.6874 4.6010 13 6 5.4497 1.5154 5.5804 14 6 5.2832 0.7509 6.9203 15 1 4.3598 1.0394 7.4225 16 7 6.4406 0.9626 7.7930 17 6 6.3073 0.8353 9.1499 18 1 5.3491 0.5785 9.5767 19 6 7.4039 1.0364 9.9770 20 7 8.5717 1.3499 9.4569 21 14 7.2222 0.8621 11.8279 22 1 8.5297 1.1261 12.4807 23 1 6.2174 1.8382 12.3207 24 1 6.7751 -0.5159 12.1539 25 6 5.2161 -0.7183 6.4337 26 16 3.0118 0.0072 2.4291 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2489 36 1 1.1563 -2.6159 0.8995 37 1 2.1943 -3.4448 3.0738 38 1 3.6062 1.1418 4.4962 39 1 5.0819 0.6378 3.6289 40 1 5.0652 2.5317 5.6659 41 1 6.4938 1.5220 5.2675 42 1 7.3014 1.1930 7.4098 43 1 8.6661 1.4401 8.4957 44 1 6.2197 -1.1067 6.2601 45 1 4.6904 -1.3356 7.1622 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001019803841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:31 Heat of formation + Delta-G solvation = -20.060810 kcal Electronic energy + Delta-G solvation = -24707.794763 eV Core-core repulsion = 21236.876050 eV Total energy + Delta-G solvation = -3470.918714 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 322.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.22965 -39.79898 -38.78081 -36.78846 -36.34509 -33.50211 -31.19539 -30.60629 -28.83888 -28.28794 -28.11475 -26.41801 -25.41942 -24.11073 -22.24313 -21.56023 -21.39134 -19.65776 -19.17698 -18.82433 -17.49183 -17.02735 -16.98991 -16.42589 -16.01746 -15.78206 -15.49762 -15.25174 -14.99239 -14.86663 -14.58354 -14.19788 -14.03998 -13.85156 -13.70912 -13.57433 -13.15168 -12.96433 -12.91726 -12.75257 -12.63715 -12.56437 -12.41339 -12.31103 -11.92479 -11.90830 -11.88677 -11.83417 -11.41314 -11.33245 -11.22483 -11.01693 -10.05612 -9.59507 -9.47706 -9.21857 -8.42699 -5.39347 -0.53196 0.45973 0.94194 1.33490 1.58384 1.67342 1.75079 1.84146 2.07551 2.68704 3.28535 3.42189 3.43519 3.52778 3.76534 3.90566 3.95136 4.02414 4.03303 4.16477 4.24125 4.34839 4.38286 4.45472 4.52183 4.67518 4.72807 4.77899 4.80503 4.88266 4.91413 4.95784 5.01618 5.02919 5.04329 5.10958 5.17529 5.21268 5.33163 5.34991 5.41837 5.44409 5.57263 6.31080 6.47305 6.88353 7.02813 7.91910 8.01546 9.08870 Molecular weight = 322.15amu Principal moments of inertia in cm(-1) A = 0.028815 B = 0.002600 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.495696 B =10764.955396 C =11326.360721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.001 4.001 3 C -0.158 4.158 4 C -0.136 4.136 5 C -0.186 4.186 6 C -0.161 4.161 7 C -0.052 4.052 8 C -0.310 4.310 9 C 0.592 3.408 10 O -0.587 6.587 11 N -0.611 5.611 12 C 0.094 3.906 13 C -0.124 4.124 14 C 0.172 3.828 15 H 0.066 0.934 16 N -0.732 5.732 17 C -0.339 4.339 18 H 0.066 0.934 19 C -0.097 4.097 20 N -0.971 5.971 21 Si 1.125 2.875 22 H -0.291 1.291 23 H -0.274 1.274 24 H -0.283 1.283 25 C 0.094 3.906 26 S 0.263 5.737 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.160 0.840 37 H 0.142 0.858 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.080 0.920 42 H 0.366 0.634 43 H 0.247 0.753 44 H 0.050 0.950 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.284 1.553 -25.969 31.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.003 4.003 3 C -0.216 4.216 4 C -0.194 4.194 5 C -0.305 4.305 6 C -0.190 4.190 7 C -0.086 4.086 8 C -0.430 4.430 9 C 0.383 3.617 10 O -0.470 6.470 11 N -0.343 5.343 12 C -0.029 4.029 13 C -0.162 4.162 14 C 0.061 3.939 15 H 0.084 0.916 16 N -0.373 5.373 17 C -0.470 4.470 18 H 0.084 0.916 19 C -0.289 4.289 20 N -0.618 5.618 21 Si 0.950 3.050 22 H -0.217 1.217 23 H -0.200 1.200 24 H -0.209 1.209 25 C -0.032 4.032 26 S 0.535 5.465 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.104 0.896 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.071 0.929 36 H 0.178 0.822 37 H 0.159 0.841 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.127 0.873 41 H 0.099 0.901 42 H 0.199 0.801 43 H 0.057 0.943 44 H 0.068 0.932 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.109 2.455 -23.927 28.949 hybrid contribution -0.812 -2.125 -1.324 2.632 sum -16.921 0.330 -25.251 30.398 Atomic orbital electron populations 1.21902 0.92065 1.02705 1.02736 1.19296 0.96575 0.94788 0.89622 1.22070 1.01624 0.94224 1.03680 1.21900 1.01097 1.00574 0.95829 1.25093 1.03494 0.99220 1.02722 1.19930 1.05154 0.96025 0.97872 1.20858 0.93969 0.99725 0.94093 1.24407 1.13767 1.02551 1.02265 1.17174 0.77963 0.82623 0.83907 1.90776 1.65046 1.26743 1.64421 1.48372 1.49619 1.12353 1.23958 1.22308 1.01748 0.80994 0.97860 1.22863 1.00807 0.99859 0.92698 1.21386 0.91006 0.90723 0.90773 0.91577 1.42404 1.07951 1.83909 1.03050 1.20363 0.97696 1.44303 0.84618 0.91640 1.27146 0.92012 0.99814 1.09911 1.70998 1.25141 1.53067 1.12600 0.82663 0.75475 0.76835 0.70068 1.21743 1.20003 1.20936 1.23011 0.94388 1.01594 0.84188 1.83032 1.44600 1.08725 1.10173 0.92863 0.90281 0.92085 0.92030 0.89612 0.92009 0.92089 0.90277 0.92891 0.82238 0.84075 0.88772 0.88845 0.87347 0.90113 0.80070 0.94252 0.93209 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 8.33 71.98 0.60 -0.61 16 2 C 0.00 -0.01 0.90 -52.93 -0.05 -0.06 16 3 C -0.16 -1.41 7.52 71.98 0.54 -0.87 16 4 C -0.14 -1.21 8.33 71.98 0.60 -0.61 16 5 C -0.19 -2.93 4.97 24.68 0.12 -2.81 16 6 C -0.16 -2.85 9.18 21.09 0.19 -2.66 16 7 C -0.05 -1.26 10.01 21.72 0.22 -1.04 16 8 C -0.31 -8.49 6.38 24.08 0.15 -8.33 16 9 C 0.59 21.32 7.82 86.42 0.68 22.00 16 10 O -0.59 -26.08 17.10 -4.34 -0.07 -26.16 16 11 N -0.61 -20.56 3.33 -816.60 -2.72 -23.27 16 12 C 0.09 2.31 5.17 86.73 0.45 2.76 16 13 C -0.12 -3.43 6.60 31.78 0.21 -3.22 16 14 C 0.17 6.67 3.71 46.39 0.17 6.85 16 15 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 16 N -0.73 -35.82 5.24 -316.38 -1.66 -37.48 16 17 C -0.34 -18.83 9.96 84.03 0.84 -18.00 16 18 H 0.07 3.60 7.83 -2.91 -0.02 3.57 16 19 C -0.10 -5.58 5.50 84.86 0.47 -5.11 16 20 N -0.97 -59.87 13.70 21.65 0.30 -59.58 16 21 Si 1.12 51.97 29.92 68.60 2.05 54.02 16 22 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 25 C 0.09 3.79 6.60 86.86 0.57 4.36 16 26 S 0.26 4.80 16.71 -56.49 -0.94 3.85 16 27 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 28 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.06 0.54 7.86 -2.39 -0.02 0.52 16 30 H 0.06 0.58 7.91 -2.39 -0.02 0.56 16 31 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.58 7.90 -2.39 -0.02 0.56 16 33 H 0.06 0.54 7.86 -2.38 -0.02 0.52 16 34 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.16 2.09 7.90 -2.91 -0.02 2.07 16 37 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 38 H 0.09 1.91 6.81 -2.39 -0.02 1.89 16 39 H 0.09 1.90 7.00 -2.39 -0.02 1.89 16 40 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.08 2.24 8.00 -2.39 -0.02 2.22 16 42 H 0.37 18.37 6.60 -92.71 -0.61 17.76 16 43 H 0.25 15.01 6.77 -92.71 -0.63 14.38 16 44 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 45 H 0.05 2.11 8.04 -2.39 -0.02 2.09 16 Total: -1.00 -73.68 371.89 3.23 -70.45 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.51 Total: 25.51 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: 5.76 Total: -7.35 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -4.08 Total: -120.33 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.07 Total: -26.16 kcal Atomic # 14 Polarization: 51.97 SS G_CDS: 2.05 Total: 54.02 kcal Atomic # 16 Polarization: 4.80 SS G_CDS: -0.94 Total: 3.85 kcal Total: -73.68 3.23 -70.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001019803841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.392 kcal (2) G-P(sol) polarization free energy of solvation -73.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds